PDB Chemical Component CXM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CXM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.468 |
1.464 |
| N |
CN |
1.342 |
1.347 |
| N |
H |
1.020 |
0.970 |
| CA |
CB |
1.508 |
1.529 |
| CA |
C |
1.516 |
1.507 |
| CA |
HA |
1.115 |
1.090 |
| CB |
CG |
1.514 |
1.529 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
SD |
1.809 |
1.813 |
| CG |
HG2 |
1.115 |
1.090 |
| CG |
HG3 |
1.114 |
1.090 |
| SD |
CE |
1.771 |
1.813 |
| CE |
HE1 |
1.116 |
1.089 |
| CE |
HE2 |
1.115 |
1.090 |
| CE |
HE3 |
1.115 |
1.090 |
| C |
O |
1.243 |
1.208 |
| C |
OXT |
1.344 |
1.342 |
| CN |
ON1 |
1.223 |
1.215 |
| CN |
ON2 |
1.226 |
1.346 |
| ON2 |
HO2 |
0.950 |
0.967 |
| OXT |
HXT |
0.949 |
0.967 |
Bond Angles for CXM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CN |
122.6 |
120.0 |
| CA |
N |
H |
123.4 |
120.0 |
| N |
CA |
CB |
111.6 |
109.5 |
| N |
CA |
C |
108.3 |
109.5 |
| N |
CA |
HA |
108.4 |
109.5 |
| CN |
N |
H |
114.1 |
120.0 |
| N |
CN |
ON1 |
106.1 |
120.0 |
| N |
CN |
ON2 |
134.6 |
120.0 |
| CB |
CA |
C |
107.9 |
109.5 |
| CB |
CA |
HA |
108.7 |
109.4 |
| CA |
CB |
CG |
113.4 |
109.5 |
| CA |
CB |
HB2 |
110.8 |
109.5 |
| CA |
CB |
HB3 |
110.8 |
109.4 |
| C |
CA |
HA |
112.0 |
109.5 |
| CA |
C |
O |
117.5 |
120.0 |
| CA |
C |
OXT |
121.7 |
120.0 |
| CG |
CB |
HB2 |
110.7 |
109.5 |
| CG |
CB |
HB3 |
110.7 |
109.4 |
| CB |
CG |
SD |
110.6 |
109.6 |
| CB |
CG |
HG2 |
111.9 |
109.5 |
| CB |
CG |
HG3 |
111.8 |
109.4 |
| HB2 |
CB |
HB3 |
99.5 |
109.4 |
| SD |
CG |
HG2 |
111.8 |
109.5 |
| SD |
CG |
HG3 |
111.8 |
109.4 |
| CG |
SD |
CE |
97.7 |
100.1 |
| HG2 |
CG |
HG3 |
98.6 |
109.4 |
| SD |
CE |
HE1 |
97.7 |
109.5 |
| SD |
CE |
HE2 |
116.8 |
109.4 |
| SD |
CE |
HE3 |
116.8 |
109.5 |
| HE1 |
CE |
HE2 |
116.7 |
109.5 |
| HE1 |
CE |
HE3 |
116.7 |
109.5 |
| HE2 |
CE |
HE3 |
93.7 |
109.4 |
| O |
C |
OXT |
120.7 |
119.9 |
| C |
OXT |
HXT |
121.7 |
120.0 |
| ON1 |
CN |
ON2 |
118.3 |
119.9 |
| CN |
ON2 |
HO2 |
134.6 |
120.1 |
Torsion Angles for CXM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CN |
N |
CA |
H |
180.0 |
180.1 |
| CA |
N |
CN |
ON1 |
191.4 |
360.0 |
| CA |
N |
CN |
ON2 |
359.4 |
180.0 |
| CB |
CA |
N |
C |
241.4 |
240.0 |
| CB |
CA |
N |
HA |
119.7 |
120.0 |
| N |
CA |
CB |
CG |
296.3 |
300.0 |
| N |
CA |
CB |
HB2 |
61.5 |
180.0 |
| N |
CA |
CB |
HB3 |
171.0 |
60.0 |
| C |
CA |
N |
HA |
238.3 |
240.0 |
| N |
CA |
C |
O |
322.0 |
150.0 |
| N |
CA |
C |
OXT |
145.8 |
330.0 |
| CA |
N |
CN |
H |
180.0 |
179.9 |
| CN |
N |
CA |
CB |
106.6 |
150.0 |
| CN |
N |
CA |
C |
225.2 |
270.1 |
| CN |
N |
CA |
HA |
346.9 |
30.0 |
| ON1 |
CN |
N |
ON2 |
192.0 |
180.0 |
| N |
CN |
ON2 |
HO2 |
180.1 |
180.0 |
| CA |
N |
H |
CN |
180.0 |
180.1 |
| H |
N |
CA |
CB |
286.7 |
330.0 |
| H |
N |
CA |
C |
45.2 |
90.0 |
| H |
N |
CA |
HA |
167.0 |
210.0 |
| H |
N |
CN |
ON1 |
11.4 |
180.0 |
| H |
N |
CN |
ON2 |
179.4 |
0.0 |
| CB |
CA |
N |
CN |
106.6 |
150.0 |
| CB |
CA |
N |
H |
286.7 |
330.0 |
| N |
CA |
CB |
C |
118.8 |
120.0 |
| N |
CA |
CB |
HA |
240.5 |
240.0 |
| C |
CA |
CB |
HA |
121.7 |
120.0 |
| CB |
CA |
C |
O |
82.9 |
270.1 |
| CB |
CA |
C |
OXT |
266.7 |
90.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
120.1 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
SD |
172.6 |
180.0 |
| CA |
CB |
CG |
HG2 |
297.9 |
59.9 |
| CA |
CB |
CG |
HG3 |
47.3 |
300.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
120.0 |
| C |
CA |
N |
CN |
225.2 |
270.1 |
| C |
CA |
N |
H |
45.2 |
90.0 |
| N |
CA |
C |
CB |
239.1 |
239.9 |
| N |
CA |
C |
HA |
119.5 |
120.0 |
| CB |
CA |
C |
HA |
240.3 |
240.0 |
| C |
CA |
CB |
CG |
177.5 |
180.0 |
| C |
CA |
CB |
HB2 |
302.7 |
59.9 |
| C |
CA |
CB |
HB3 |
52.2 |
300.0 |
| O |
C |
CA |
OXT |
176.2 |
180.0 |
| CA |
C |
OXT |
HXT |
179.9 |
180.0 |
| HA |
CA |
N |
CN |
346.9 |
30.0 |
| HA |
CA |
N |
H |
167.0 |
210.0 |
| N |
CA |
HA |
CB |
121.4 |
120.0 |
| N |
CA |
HA |
C |
240.6 |
240.0 |
| CB |
CA |
HA |
C |
119.1 |
120.0 |
| HA |
CA |
CB |
CG |
55.8 |
60.0 |
| HA |
CA |
CB |
HB2 |
181.0 |
300.0 |
| HA |
CA |
CB |
HB3 |
290.5 |
180.0 |
| HA |
CA |
C |
O |
202.6 |
30.0 |
| HA |
CA |
C |
OXT |
26.4 |
210.0 |
| CG |
CB |
CA |
C |
177.5 |
180.0 |
| CG |
CB |
CA |
HA |
55.8 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
239.9 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
240.1 |
| SD |
CG |
CB |
HG2 |
234.7 |
120.1 |
| SD |
CG |
CB |
HG3 |
125.3 |
240.0 |
| CB |
CG |
SD |
CE |
278.1 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
119.9 |
| HB2 |
CB |
CA |
C |
302.7 |
59.9 |
| HB2 |
CB |
CA |
HA |
181.0 |
300.0 |
| CA |
CB |
HB2 |
CG |
233.3 |
120.1 |
| CA |
CB |
HB2 |
HB3 |
116.7 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
243.4 |
119.9 |
| HB2 |
CB |
CG |
SD |
47.3 |
300.1 |
| HB2 |
CB |
CG |
HG2 |
172.6 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
282.1 |
60.1 |
| HB3 |
CB |
CA |
C |
52.2 |
300.0 |
| HB3 |
CB |
CA |
HA |
290.5 |
180.0 |
| CA |
CB |
HB3 |
CG |
126.7 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
243.3 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
116.6 |
240.0 |
| HB3 |
CB |
CG |
SD |
297.9 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
63.2 |
299.9 |
| HB3 |
CB |
CG |
HG3 |
172.7 |
180.0 |
| SD |
CG |
CB |
HB2 |
47.3 |
300.1 |
| SD |
CG |
CB |
HB3 |
297.9 |
60.0 |
| CB |
CG |
SD |
HG2 |
125.3 |
239.9 |
| CB |
CG |
SD |
HG3 |
234.7 |
120.0 |
| HG2 |
CG |
SD |
HG3 |
109.4 |
240.1 |
| CG |
SD |
CE |
HE1 |
180.0 |
180.0 |
| CG |
SD |
CE |
HE2 |
305.2 |
300.0 |
| CG |
SD |
CE |
HE3 |
54.8 |
59.9 |
| HG2 |
CG |
CB |
HB2 |
172.6 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
63.2 |
299.9 |
| CB |
CG |
HG2 |
SD |
235.4 |
120.1 |
| CB |
CG |
HG2 |
HG3 |
117.8 |
240.1 |
| SD |
CG |
HG2 |
HG3 |
242.3 |
119.9 |
| HG2 |
CG |
SD |
CE |
152.8 |
300.1 |
| HG3 |
CG |
CB |
HB2 |
282.1 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
172.7 |
180.0 |
| CB |
CG |
HG3 |
SD |
124.6 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
242.2 |
120.0 |
| SD |
CG |
HG3 |
HG2 |
117.7 |
240.0 |
| HG3 |
CG |
SD |
CE |
43.4 |
60.0 |
| CE |
SD |
CG |
HG2 |
152.8 |
300.1 |
| CE |
SD |
CG |
HG3 |
43.4 |
60.0 |
| HE1 |
CE |
SD |
HE2 |
234.8 |
240.0 |
| HE1 |
CE |
SD |
HE3 |
125.2 |
120.1 |
| HE2 |
CE |
SD |
HE3 |
250.4 |
240.1 |
| SD |
CE |
HE1 |
HE2 |
125.3 |
120.0 |
| SD |
CE |
HE1 |
HE3 |
234.8 |
240.0 |
| HE2 |
CE |
HE1 |
HE3 |
109.5 |
120.0 |
| SD |
CE |
HE2 |
HE1 |
245.0 |
240.0 |
| SD |
CE |
HE2 |
HE3 |
122.5 |
120.0 |
| HE1 |
CE |
HE2 |
HE3 |
237.6 |
240.0 |
| SD |
CE |
HE3 |
HE1 |
115.0 |
120.1 |
| SD |
CE |
HE3 |
HE2 |
237.4 |
240.1 |
| HE1 |
CE |
HE3 |
HE2 |
122.5 |
120.0 |
| O |
C |
CA |
HA |
202.6 |
30.0 |
| CA |
C |
O |
OXT |
183.8 |
180.0 |
| O |
C |
OXT |
HXT |
3.9 |
359.9 |
| OXT |
C |
CA |
HA |
26.4 |
210.0 |
| CA |
C |
OXT |
O |
176.1 |
180.0 |
| ON1 |
CN |
N |
H |
11.4 |
180.0 |
| N |
CN |
ON1 |
ON2 |
170.4 |
180.0 |
| ON1 |
CN |
ON2 |
HO2 |
347.0 |
360.0 |
| ON2 |
CN |
N |
H |
179.4 |
0.0 |
| N |
CN |
ON2 |
ON1 |
193.1 |
180.0 |