PDB Chemical Component CXL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CXL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.534 |
1.530 |
C1 |
C6 |
1.575 |
1.529 |
C1 |
O |
1.452 |
1.429 |
C1 |
H1 |
1.115 |
1.090 |
C2 |
C3 |
1.547 |
1.528 |
C2 |
H21 |
1.116 |
1.090 |
C2 |
H22 |
1.114 |
1.090 |
C3 |
C4 |
1.550 |
1.530 |
C3 |
H31 |
1.116 |
1.090 |
C3 |
H32 |
1.115 |
1.089 |
C4 |
C5 |
1.554 |
1.529 |
C4 |
H41 |
1.115 |
1.091 |
C4 |
H42 |
1.114 |
1.090 |
C5 |
C6 |
1.556 |
1.529 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.114 |
1.090 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.115 |
1.090 |
O |
HO |
0.950 |
0.966 |
Bond Angles for CXL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
108.3 |
109.5 |
C2 |
C1 |
O |
108.8 |
109.5 |
C2 |
C1 |
H1 |
110.6 |
109.4 |
C1 |
C2 |
C3 |
112.3 |
109.5 |
C1 |
C2 |
H21 |
111.1 |
109.5 |
C1 |
C2 |
H22 |
111.2 |
109.4 |
C6 |
C1 |
O |
109.2 |
109.5 |
C6 |
C1 |
H1 |
110.2 |
109.4 |
C1 |
C6 |
C5 |
111.2 |
109.5 |
C1 |
C6 |
H61 |
111.5 |
109.5 |
C1 |
C6 |
H62 |
111.5 |
109.5 |
O |
C1 |
H1 |
109.7 |
109.5 |
C1 |
O |
HO |
108.7 |
106.9 |
C3 |
C2 |
H21 |
111.2 |
109.5 |
C3 |
C2 |
H22 |
111.2 |
109.4 |
C2 |
C3 |
C4 |
113.7 |
109.5 |
C2 |
C3 |
H31 |
110.7 |
109.4 |
C2 |
C3 |
H32 |
110.6 |
109.5 |
H21 |
C2 |
H22 |
99.2 |
109.4 |
C4 |
C3 |
H31 |
110.7 |
109.4 |
C4 |
C3 |
H32 |
110.7 |
109.5 |
C3 |
C4 |
C5 |
111.0 |
109.5 |
C3 |
C4 |
H41 |
111.6 |
109.5 |
C3 |
C4 |
H42 |
111.6 |
109.5 |
H31 |
C3 |
H32 |
99.6 |
109.4 |
C5 |
C4 |
H41 |
111.6 |
109.5 |
C5 |
C4 |
H42 |
111.6 |
109.5 |
C4 |
C5 |
C6 |
111.3 |
109.5 |
C4 |
C5 |
H51 |
111.5 |
109.5 |
C4 |
C5 |
H52 |
111.5 |
109.5 |
H41 |
C4 |
H42 |
98.8 |
109.4 |
C6 |
C5 |
H51 |
111.5 |
109.5 |
C6 |
C5 |
H52 |
111.6 |
109.5 |
C5 |
C6 |
H61 |
111.6 |
109.5 |
C5 |
C6 |
H62 |
111.6 |
109.5 |
H51 |
C5 |
H52 |
98.9 |
109.4 |
H61 |
C6 |
H62 |
98.8 |
109.4 |
Torsion Angles for CXL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
O |
241.5 |
239.9 |
C6 |
C1 |
C2 |
H1 |
120.9 |
119.9 |
C2 |
C1 |
C6 |
C5 |
300.7 |
300.1 |
C2 |
C1 |
C6 |
H61 |
66.0 |
60.1 |
C2 |
C1 |
C6 |
H62 |
175.4 |
180.0 |
O |
C1 |
C2 |
H1 |
239.5 |
240.0 |
C2 |
C1 |
O |
HO |
180.0 |
180.0 |
C3 |
C2 |
C1 |
H21 |
234.7 |
239.9 |
C3 |
C2 |
C1 |
H22 |
125.3 |
120.0 |
C1 |
C2 |
C3 |
C4 |
306.0 |
300.1 |
C1 |
C2 |
C3 |
H31 |
71.3 |
60.0 |
C1 |
C2 |
C3 |
H32 |
180.7 |
180.0 |
H21 |
C2 |
C1 |
H22 |
250.5 |
240.1 |
C2 |
C1 |
C6 |
O |
118.3 |
120.1 |
C2 |
C1 |
C6 |
H1 |
238.9 |
240.1 |
C6 |
C1 |
C2 |
C3 |
56.7 |
59.9 |
C6 |
C1 |
C2 |
H21 |
182.0 |
180.0 |
C6 |
C1 |
C2 |
H22 |
291.5 |
299.9 |
O |
C1 |
C6 |
H1 |
120.6 |
120.0 |
C6 |
C1 |
O |
HO |
298.0 |
300.0 |
C4 |
C5 |
C6 |
C1 |
57.9 |
60.0 |
C1 |
C6 |
C5 |
H51 |
292.7 |
300.0 |
C1 |
C6 |
C5 |
H52 |
183.2 |
180.1 |
C5 |
C6 |
C1 |
H61 |
234.7 |
240.0 |
C5 |
C6 |
C1 |
H62 |
125.3 |
120.0 |
H61 |
C6 |
C1 |
H62 |
250.6 |
240.1 |
C2 |
C1 |
O |
C6 |
242.0 |
239.9 |
C2 |
C1 |
O |
H1 |
121.1 |
120.0 |
O |
C1 |
C2 |
C3 |
175.3 |
180.0 |
O |
C1 |
C2 |
H21 |
300.6 |
300.1 |
O |
C1 |
C2 |
H22 |
50.0 |
60.0 |
C6 |
C1 |
O |
H1 |
239.1 |
240.0 |
O |
C1 |
C6 |
C5 |
182.4 |
180.0 |
O |
C1 |
C6 |
H61 |
307.7 |
300.0 |
O |
C1 |
C6 |
H62 |
57.1 |
59.9 |
C2 |
C1 |
H1 |
C6 |
119.7 |
120.0 |
C2 |
C1 |
H1 |
O |
240.0 |
240.0 |
H1 |
C1 |
C2 |
C3 |
295.8 |
300.0 |
H1 |
C1 |
C2 |
H21 |
61.1 |
60.1 |
H1 |
C1 |
C2 |
H22 |
170.6 |
180.0 |
C6 |
C1 |
H1 |
O |
120.3 |
120.0 |
H1 |
C1 |
C6 |
C5 |
61.8 |
60.0 |
H1 |
C1 |
C6 |
H61 |
187.1 |
180.0 |
H1 |
C1 |
C6 |
H62 |
296.5 |
300.0 |
H1 |
C1 |
O |
HO |
58.9 |
60.0 |
C3 |
C2 |
C1 |
C6 |
56.7 |
59.9 |
C3 |
C2 |
C1 |
O |
175.3 |
180.0 |
C3 |
C2 |
C1 |
H1 |
295.8 |
300.0 |
C1 |
C2 |
C3 |
H21 |
125.2 |
120.1 |
C1 |
C2 |
C3 |
H22 |
234.7 |
240.0 |
H21 |
C2 |
C3 |
H22 |
109.5 |
119.9 |
C4 |
C3 |
C2 |
H31 |
234.7 |
240.1 |
C4 |
C3 |
C2 |
H32 |
125.3 |
120.1 |
C2 |
C3 |
C4 |
C5 |
50.3 |
59.9 |
C2 |
C3 |
C4 |
H41 |
175.5 |
180.0 |
C2 |
C3 |
C4 |
H42 |
285.0 |
299.9 |
H31 |
C3 |
C2 |
H32 |
250.6 |
240.0 |
H21 |
C2 |
C1 |
C6 |
182.0 |
180.0 |
H21 |
C2 |
C1 |
O |
300.6 |
300.1 |
H21 |
C2 |
C1 |
H1 |
61.1 |
60.1 |
C1 |
C2 |
H21 |
C3 |
234.1 |
239.9 |
C1 |
C2 |
H21 |
H22 |
117.0 |
119.9 |
C3 |
C2 |
H21 |
H22 |
242.9 |
240.0 |
H21 |
C2 |
C3 |
C4 |
180.7 |
180.0 |
H21 |
C2 |
C3 |
H31 |
306.0 |
299.9 |
H21 |
C2 |
C3 |
H32 |
55.4 |
59.9 |
H22 |
C2 |
C1 |
C6 |
291.5 |
299.9 |
H22 |
C2 |
C1 |
O |
50.0 |
60.0 |
H22 |
C2 |
C1 |
H1 |
170.6 |
180.0 |
C1 |
C2 |
H22 |
C3 |
125.9 |
120.0 |
C1 |
C2 |
H22 |
H21 |
243.0 |
240.0 |
C3 |
C2 |
H22 |
H21 |
117.1 |
120.0 |
H22 |
C2 |
C3 |
C4 |
71.3 |
60.1 |
H22 |
C2 |
C3 |
H31 |
196.5 |
180.0 |
H22 |
C2 |
C3 |
H32 |
306.0 |
300.0 |
C4 |
C3 |
C2 |
H21 |
180.7 |
180.0 |
C4 |
C3 |
C2 |
H22 |
71.3 |
60.1 |
C2 |
C3 |
C4 |
H31 |
125.3 |
119.9 |
C2 |
C3 |
C4 |
H32 |
234.7 |
239.9 |
H31 |
C3 |
C4 |
H32 |
109.5 |
119.9 |
C5 |
C4 |
C3 |
H41 |
234.7 |
239.9 |
C5 |
C4 |
C3 |
H42 |
125.3 |
120.0 |
C3 |
C4 |
C5 |
C6 |
307.9 |
300.0 |
C3 |
C4 |
C5 |
H51 |
73.1 |
60.0 |
C3 |
C4 |
C5 |
H52 |
182.6 |
180.0 |
H41 |
C4 |
C3 |
H42 |
250.5 |
240.1 |
H31 |
C3 |
C2 |
H21 |
306.0 |
299.9 |
H31 |
C3 |
C2 |
H22 |
196.5 |
180.0 |
C2 |
C3 |
H31 |
C4 |
233.0 |
240.0 |
C2 |
C3 |
H31 |
H32 |
116.5 |
120.0 |
C4 |
C3 |
H31 |
H32 |
243.4 |
240.0 |
H31 |
C3 |
C4 |
C5 |
285.0 |
300.0 |
H31 |
C3 |
C4 |
H41 |
50.3 |
60.1 |
H31 |
C3 |
C4 |
H42 |
159.8 |
180.0 |
H32 |
C3 |
C2 |
H21 |
55.4 |
59.9 |
H32 |
C3 |
C2 |
H22 |
306.0 |
300.0 |
C2 |
C3 |
H32 |
C4 |
127.0 |
120.1 |
C2 |
C3 |
H32 |
H31 |
243.5 |
240.0 |
C4 |
C3 |
H32 |
H31 |
116.6 |
119.9 |
H32 |
C3 |
C4 |
C5 |
175.5 |
180.1 |
H32 |
C3 |
C4 |
H41 |
300.8 |
300.1 |
H32 |
C3 |
C4 |
H42 |
50.3 |
60.0 |
C1 |
C6 |
C5 |
C4 |
57.9 |
60.0 |
C5 |
C4 |
C3 |
H31 |
285.0 |
300.0 |
C5 |
C4 |
C3 |
H32 |
175.5 |
180.1 |
C3 |
C4 |
C5 |
H41 |
125.3 |
120.1 |
C3 |
C4 |
C5 |
H42 |
234.8 |
240.0 |
H41 |
C4 |
C5 |
H42 |
109.5 |
119.9 |
C6 |
C5 |
C4 |
H51 |
234.8 |
240.0 |
C6 |
C5 |
C4 |
H52 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
H61 |
292.7 |
300.0 |
C4 |
C5 |
C6 |
H62 |
183.2 |
180.0 |
H51 |
C5 |
C4 |
H52 |
250.5 |
240.0 |
H41 |
C4 |
C3 |
H31 |
50.3 |
60.1 |
H41 |
C4 |
C3 |
H32 |
300.8 |
300.1 |
C3 |
C4 |
H41 |
C5 |
235.1 |
239.9 |
C3 |
C4 |
H41 |
H42 |
117.5 |
119.9 |
C5 |
C4 |
H41 |
H42 |
242.4 |
240.0 |
H41 |
C4 |
C5 |
C6 |
182.6 |
180.0 |
H41 |
C4 |
C5 |
H51 |
307.8 |
300.0 |
H41 |
C4 |
C5 |
H52 |
57.4 |
59.9 |
H42 |
C4 |
C3 |
H31 |
159.8 |
180.0 |
H42 |
C4 |
C3 |
H32 |
50.3 |
60.0 |
C3 |
C4 |
H42 |
C5 |
124.9 |
120.0 |
C3 |
C4 |
H42 |
H41 |
242.4 |
240.0 |
C5 |
C4 |
H42 |
H41 |
117.6 |
120.0 |
H42 |
C4 |
C5 |
C6 |
73.1 |
60.0 |
H42 |
C4 |
C5 |
H51 |
198.3 |
180.0 |
H42 |
C4 |
C5 |
H52 |
307.9 |
300.0 |
C5 |
C6 |
C1 |
O |
182.4 |
180.0 |
C5 |
C6 |
C1 |
H1 |
61.8 |
60.0 |
C1 |
C6 |
C5 |
H61 |
125.3 |
120.0 |
C1 |
C6 |
C5 |
H62 |
234.8 |
239.9 |
C6 |
C5 |
C4 |
H41 |
182.6 |
180.0 |
C6 |
C5 |
C4 |
H42 |
73.1 |
60.0 |
C4 |
C5 |
C6 |
H51 |
125.2 |
120.0 |
C4 |
C5 |
C6 |
H52 |
234.8 |
239.9 |
H51 |
C5 |
C6 |
H52 |
109.5 |
119.9 |
H61 |
C6 |
C5 |
H62 |
109.5 |
119.9 |
H51 |
C5 |
C4 |
H41 |
307.8 |
300.0 |
H51 |
C5 |
C4 |
H42 |
198.3 |
180.0 |
C4 |
C5 |
H51 |
C6 |
234.9 |
240.0 |
C4 |
C5 |
H51 |
H52 |
117.4 |
120.0 |
C6 |
C5 |
H51 |
H52 |
242.5 |
240.1 |
H51 |
C5 |
C6 |
H61 |
167.5 |
179.9 |
H51 |
C5 |
C6 |
H62 |
58.0 |
60.0 |
H52 |
C5 |
C4 |
H41 |
57.4 |
59.9 |
H52 |
C5 |
C4 |
H42 |
307.9 |
300.0 |
C4 |
C5 |
H52 |
C6 |
125.1 |
120.0 |
C4 |
C5 |
H52 |
H51 |
242.6 |
240.0 |
C6 |
C5 |
H52 |
H51 |
117.4 |
119.9 |
H52 |
C5 |
C6 |
H61 |
57.9 |
60.0 |
H52 |
C5 |
C6 |
H62 |
308.4 |
300.1 |
H61 |
C6 |
C1 |
O |
307.7 |
300.0 |
H61 |
C6 |
C1 |
H1 |
187.1 |
180.0 |
C1 |
C6 |
H61 |
C5 |
234.9 |
240.0 |
C1 |
C6 |
H61 |
H62 |
117.4 |
120.0 |
H61 |
C6 |
C5 |
H51 |
167.5 |
179.9 |
H61 |
C6 |
C5 |
H52 |
57.9 |
60.0 |
C5 |
C6 |
H61 |
H62 |
242.5 |
240.0 |
H62 |
C6 |
C1 |
O |
57.1 |
59.9 |
H62 |
C6 |
C1 |
H1 |
296.5 |
300.0 |
C1 |
C6 |
H62 |
C5 |
125.1 |
120.0 |
C1 |
C6 |
H62 |
H61 |
242.6 |
240.0 |
H62 |
C6 |
C5 |
H51 |
58.0 |
60.0 |
H62 |
C6 |
C5 |
H52 |
308.4 |
300.1 |
C5 |
C6 |
H62 |
H61 |
117.5 |
120.0 |
HO |
O |
C1 |
H1 |
58.9 |
60.0 |