PDB Chemical Component CX5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CX5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C12 |
C13 |
1.531 |
1.532 |
C12 |
N3 |
1.475 |
1.470 |
C13 |
C14 |
1.532 |
1.530 |
C7 |
N1 |
1.359 |
1.313 |
C7 |
C8 |
1.378 |
1.398 |
N1 |
C6 |
1.354 |
1.338 |
C8 |
N2 |
1.355 |
1.313 |
C6 |
C4 |
1.393 |
1.407 |
C6 |
C5 |
1.424 |
1.418 |
C4 |
C3 |
1.399 |
1.357 |
C14 |
C10 |
1.528 |
1.530 |
N2 |
C5 |
1.351 |
1.338 |
C5 |
C1 |
1.393 |
1.404 |
C3 |
C2 |
1.400 |
1.406 |
N3 |
C11 |
1.458 |
1.468 |
N3 |
C9 |
1.402 |
1.349 |
C1 |
C2 |
1.400 |
1.384 |
C2 |
C9 |
1.492 |
1.479 |
C11 |
C10 |
1.525 |
1.533 |
C9 |
O1 |
1.236 |
1.215 |
C1 |
H1 |
1.080 |
1.079 |
C3 |
H2 |
1.080 |
1.081 |
C4 |
H3 |
1.080 |
1.079 |
C7 |
H4 |
1.080 |
1.079 |
C8 |
H5 |
1.080 |
1.080 |
C11 |
H6 |
1.100 |
1.090 |
C11 |
H7 |
1.100 |
1.090 |
C13 |
H8 |
1.100 |
1.090 |
C13 |
H9 |
1.100 |
1.091 |
C14 |
H10 |
1.100 |
1.090 |
C14 |
H11 |
1.100 |
1.090 |
C10 |
H12 |
1.100 |
1.089 |
C10 |
H13 |
1.100 |
1.090 |
C12 |
H14 |
1.100 |
1.090 |
C12 |
H15 |
1.100 |
1.089 |
Bond Angles for CX5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C13 |
H8 |
108.2 |
109.5 |
C12 |
C13 |
H9 |
108.2 |
109.5 |
C13 |
C14 |
C10 |
111.3 |
109.5 |
C14 |
C13 |
H8 |
108.2 |
109.5 |
C14 |
C13 |
H9 |
108.2 |
109.5 |
C13 |
C14 |
H10 |
109.0 |
109.4 |
C13 |
C14 |
H11 |
109.0 |
109.4 |
C8 |
C7 |
N1 |
121.7 |
120.7 |
N1 |
C7 |
H4 |
119.1 |
119.6 |
C7 |
C8 |
N2 |
122.2 |
120.7 |
C8 |
C7 |
H4 |
119.1 |
119.7 |
C7 |
C8 |
H5 |
118.9 |
119.7 |
C8 |
N2 |
C5 |
117.1 |
119.7 |
N2 |
C8 |
H5 |
118.9 |
119.7 |
C6 |
C4 |
H3 |
119.4 |
119.9 |
C4 |
C3 |
H2 |
120.0 |
119.6 |
C11 |
C10 |
C14 |
110.9 |
109.3 |
C10 |
C14 |
H10 |
109.0 |
109.5 |
C10 |
C14 |
H11 |
109.0 |
109.5 |
C14 |
C10 |
H12 |
109.1 |
109.5 |
C14 |
C10 |
H13 |
109.1 |
109.5 |
C5 |
C1 |
H1 |
119.4 |
120.2 |
C3 |
C2 |
C9 |
121.3 |
119.7 |
N3 |
C11 |
H6 |
109.2 |
109.6 |
N3 |
C11 |
H7 |
109.2 |
109.8 |
N3 |
C9 |
O1 |
121.1 |
120.0 |
C1 |
C2 |
C9 |
119.6 |
119.8 |
C2 |
C1 |
H1 |
119.3 |
120.3 |
C2 |
C9 |
O1 |
115.0 |
120.1 |
C10 |
C11 |
H6 |
109.2 |
109.6 |
C10 |
C11 |
H7 |
109.2 |
109.5 |
C11 |
C10 |
H12 |
109.1 |
109.5 |
C11 |
C10 |
H13 |
109.1 |
109.5 |
H6 |
C11 |
H7 |
109.4 |
109.6 |
H8 |
C13 |
H9 |
109.5 |
109.5 |
H10 |
C14 |
H11 |
109.5 |
109.5 |
H12 |
C10 |
H13 |
109.4 |
109.5 |
H14 |
C12 |
H15 |
109.5 |
109.7 |
Torsion Angles for CX5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C14 |
C13 |
C12 |
H8 |
239.3 |
120.0 |
C14 |
C13 |
C12 |
H9 |
120.7 |
240.0 |
C12 |
C13 |
C14 |
H10 |
165.5 |
58.6 |
C12 |
C13 |
C14 |
H11 |
285.0 |
178.6 |
H8 |
C13 |
C12 |
H9 |
241.5 |
120.0 |
N3 |
C12 |
C13 |
H8 |
74.5 |
294.6 |
N3 |
C12 |
C13 |
H9 |
193.0 |
174.6 |
C12 |
N3 |
C11 |
H6 |
59.4 |
293.9 |
C12 |
N3 |
C11 |
H7 |
179.0 |
173.5 |
C12 |
N3 |
C9 |
O1 |
180.2 |
3.7 |
C12 |
C13 |
C14 |
H8 |
120.7 |
240.0 |
C12 |
C13 |
C14 |
H9 |
239.3 |
119.9 |
C11 |
C10 |
C14 |
C13 |
309.2 |
61.4 |
C10 |
C14 |
C13 |
H10 |
239.7 |
239.9 |
C10 |
C14 |
C13 |
H11 |
120.3 |
120.0 |
C13 |
C14 |
C10 |
H12 |
69.5 |
301.4 |
C13 |
C14 |
C10 |
H13 |
189.0 |
181.3 |
H8 |
C13 |
C14 |
H9 |
118.5 |
239.9 |
H10 |
C14 |
C13 |
H11 |
240.5 |
240.1 |
N1 |
C7 |
C8 |
N2 |
0.3 |
359.8 |
C8 |
C7 |
N1 |
H4 |
180.0 |
179.9 |
N1 |
C7 |
C8 |
H5 |
180.3 |
179.9 |
N1 |
C7 |
C8 |
H4 |
180.0 |
180.1 |
C7 |
C8 |
N2 |
C5 |
0.3 |
0.2 |
N2 |
C8 |
C7 |
H5 |
180.0 |
179.9 |
N1 |
C6 |
C4 |
H3 |
0.2 |
0.0 |
N2 |
C8 |
C7 |
N1 |
0.3 |
359.8 |
N2 |
C8 |
C7 |
H4 |
180.3 |
179.7 |
C7 |
C8 |
N2 |
H5 |
180.0 |
180.1 |
C6 |
C4 |
C3 |
H2 |
178.8 |
180.0 |
C8 |
N2 |
C5 |
C6 |
359.4 |
0.0 |
C5 |
C6 |
C4 |
H3 |
180.4 |
179.7 |
C6 |
C5 |
C1 |
H1 |
180.3 |
179.7 |
C4 |
C3 |
C2 |
C9 |
179.1 |
180.0 |
C10 |
C14 |
C13 |
H8 |
284.5 |
58.6 |
C10 |
C14 |
C13 |
H9 |
166.0 |
178.7 |
C13 |
C14 |
C10 |
H10 |
120.3 |
120.0 |
C13 |
C14 |
C10 |
H11 |
239.7 |
240.0 |
C14 |
C10 |
C11 |
H6 |
298.8 |
65.1 |
C14 |
C10 |
C11 |
H7 |
179.2 |
185.4 |
C11 |
C10 |
C14 |
H12 |
239.8 |
120.0 |
C11 |
C10 |
C14 |
H13 |
120.2 |
240.1 |
H10 |
C14 |
C10 |
H11 |
119.5 |
120.0 |
H12 |
C10 |
C14 |
H13 |
240.5 |
120.1 |
C5 |
N2 |
C8 |
H5 |
180.3 |
180.1 |
N2 |
C5 |
C1 |
H1 |
0.2 |
0.2 |
C2 |
C1 |
C5 |
H1 |
180.0 |
179.8 |
C1 |
C2 |
C3 |
C9 |
182.5 |
180.1 |
C3 |
C2 |
C1 |
H1 |
178.8 |
180.0 |
C3 |
C2 |
C9 |
O1 |
233.4 |
309.0 |
C11 |
N3 |
C9 |
O1 |
359.9 |
183.8 |
C10 |
C11 |
N3 |
H6 |
239.8 |
119.8 |
C10 |
C11 |
N3 |
H7 |
120.2 |
240.2 |
N3 |
C11 |
C10 |
H12 |
298.7 |
65.3 |
N3 |
C11 |
C10 |
H13 |
179.2 |
185.4 |
H6 |
C11 |
N3 |
H7 |
240.4 |
120.4 |
C2 |
C9 |
N3 |
O1 |
181.1 |
180.0 |
C5 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
C3 |
C2 |
C1 |
C9 |
177.5 |
179.9 |
C1 |
C2 |
C9 |
O1 |
50.8 |
128.9 |
N3 |
C9 |
C2 |
O1 |
178.9 |
180.0 |
C9 |
C2 |
C1 |
H1 |
1.3 |
0.1 |
C13 |
C14 |
C10 |
C11 |
309.2 |
61.4 |
C11 |
C10 |
C14 |
H10 |
189.0 |
301.4 |
C11 |
C10 |
C14 |
H11 |
69.5 |
181.4 |
C14 |
C10 |
C11 |
H12 |
120.2 |
240.0 |
C14 |
C10 |
C11 |
H13 |
239.8 |
119.9 |
N3 |
C11 |
C10 |
H6 |
120.2 |
240.2 |
N3 |
C11 |
C10 |
H7 |
239.8 |
119.9 |
H6 |
C11 |
C10 |
H7 |
119.6 |
239.7 |
H12 |
C10 |
C11 |
H13 |
119.6 |
239.9 |
H1 |
C1 |
C2 |
C9 |
1.3 |
0.1 |
H2 |
C3 |
C2 |
C9 |
359.1 |
359.9 |
H3 |
C4 |
C3 |
H2 |
358.8 |
360.0 |
C8 |
C7 |
H4 |
N1 |
180.0 |
180.1 |
H4 |
C7 |
C8 |
N2 |
180.3 |
179.7 |
H4 |
C7 |
C8 |
H5 |
0.3 |
359.8 |
H5 |
C8 |
C7 |
N1 |
180.3 |
179.9 |
C7 |
C8 |
H5 |
N2 |
180.0 |
179.9 |
H5 |
C8 |
C7 |
H4 |
0.3 |
359.8 |
H5 |
C8 |
N2 |
C5 |
180.3 |
180.1 |
H6 |
C11 |
C10 |
C14 |
298.8 |
65.1 |
N3 |
C11 |
H6 |
H7 |
119.4 |
239.5 |
C10 |
C11 |
H6 |
H7 |
240.6 |
120.2 |
H6 |
C11 |
C10 |
H12 |
178.5 |
185.1 |
H6 |
C11 |
C10 |
H13 |
59.0 |
305.2 |
H7 |
C11 |
C10 |
C14 |
179.2 |
185.4 |
N3 |
C11 |
H7 |
H6 |
240.6 |
120.4 |
C10 |
C11 |
H7 |
H6 |
119.4 |
239.7 |
H7 |
C11 |
C10 |
H12 |
58.9 |
305.4 |
H7 |
C11 |
C10 |
H13 |
299.4 |
65.5 |
C12 |
C13 |
H8 |
H9 |
117.8 |
240.0 |
H8 |
C13 |
C14 |
C10 |
284.5 |
58.6 |
C14 |
C13 |
H8 |
H9 |
242.3 |
120.1 |
H8 |
C13 |
C14 |
H10 |
44.8 |
178.6 |
H8 |
C13 |
C14 |
H11 |
164.3 |
298.6 |
C12 |
C13 |
H9 |
H8 |
242.3 |
120.0 |
H9 |
C13 |
C14 |
C10 |
166.0 |
178.7 |
C14 |
C13 |
H9 |
H8 |
117.8 |
239.9 |
H9 |
C13 |
C14 |
H10 |
286.3 |
298.7 |
H9 |
C13 |
C14 |
H11 |
45.7 |
58.7 |
C13 |
C14 |
H10 |
C10 |
238.4 |
239.9 |
H10 |
C14 |
C13 |
H8 |
44.8 |
178.6 |
H10 |
C14 |
C13 |
H9 |
286.3 |
298.7 |
C13 |
C14 |
H10 |
H11 |
119.2 |
119.9 |
C10 |
C14 |
H10 |
H11 |
240.8 |
240.0 |
H10 |
C14 |
C10 |
H12 |
309.2 |
181.4 |
H10 |
C14 |
C10 |
H13 |
68.7 |
61.3 |
C13 |
C14 |
H11 |
C10 |
121.7 |
120.1 |
H11 |
C14 |
C13 |
H8 |
164.3 |
298.6 |
H11 |
C14 |
C13 |
H9 |
45.7 |
58.7 |
C13 |
C14 |
H11 |
H10 |
240.8 |
240.1 |
C10 |
C14 |
H11 |
H10 |
119.2 |
120.0 |
H11 |
C14 |
C10 |
H12 |
189.7 |
61.4 |
H11 |
C14 |
C10 |
H13 |
309.3 |
301.3 |
C11 |
C10 |
H12 |
C14 |
121.3 |
240.2 |
H12 |
C10 |
C14 |
H10 |
309.2 |
181.4 |
H12 |
C10 |
C14 |
H11 |
189.7 |
61.4 |
C14 |
C10 |
H12 |
H13 |
119.3 |
239.9 |
H12 |
C10 |
C11 |
H6 |
178.5 |
185.1 |
H12 |
C10 |
C11 |
H7 |
58.9 |
305.4 |
C11 |
C10 |
H12 |
H13 |
240.6 |
120.1 |
C11 |
C10 |
H13 |
C14 |
238.7 |
119.8 |
H13 |
C10 |
C14 |
H10 |
68.7 |
61.3 |
H13 |
C10 |
C14 |
H11 |
309.3 |
301.3 |
C14 |
C10 |
H13 |
H12 |
240.7 |
120.1 |
H13 |
C10 |
C11 |
H6 |
59.0 |
305.2 |
H13 |
C10 |
C11 |
H7 |
299.4 |
65.5 |
C11 |
C10 |
H13 |
H12 |
119.4 |
239.9 |
H14 |
C12 |
C13 |
H8 |
194.9 |
54.4 |
H14 |
C12 |
C13 |
H9 |
313.4 |
294.4 |
H15 |
C12 |
C13 |
H8 |
314.1 |
174.9 |
H15 |
C12 |
C13 |
H9 |
72.6 |
54.8 |