PDB Chemical Component CVX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CVX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	C4	1.524	1.531
C4	C3	1.536	1.530
C3	C2	1.553	1.530
C2	O3	1.399	1.429
O3	P	1.537	1.610
P	C1	1.764	1.823
P	O2	1.525	1.480
P	OX0	1.621	1.611
C5	H51C	1.100	1.090
C5	H52C	1.100	1.090
C5	H53C	1.100	1.090
C4	H41C	1.100	1.090
C4	H42C	1.100	1.090
C3	H31C	1.099	1.090
C3	H32C	1.100	1.090
C2	H21C	1.100	1.090
C2	H22C	1.100	1.090
C1	H11C	1.100	1.091
C1	H12C	1.100	1.089
C1	H13C	1.100	1.090
OX0	HX0	0.950	0.967

Bond Angles for CVX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	113.6	109.5
C4	C5	H51C	109.5	109.4
C4	C5	H52C	109.5	109.4
C4	C5	H53C	109.5	109.5
C5	C4	H41C	108.1	109.5
C5	C4	H42C	107.2	109.4
C4	C3	C2	114.3	109.5
C3	C4	H41C	108.1	109.5
C3	C4	H42C	107.2	109.5
C4	C3	H31C	107.9	109.5
C4	C3	H32C	106.8	109.4
C3	C2	O3	105.1	109.5
C2	C3	H31C	107.9	109.5
C2	C3	H32C	106.8	109.5
C3	C2	H21C	110.9	109.5
C3	C2	H22C	111.9	109.5
C2	O3	P	128.8	123.0
O3	C2	H21C	111.0	109.5
O3	C2	H22C	111.9	109.4
O3	P	C1	117.4	109.5
O3	P	O2	108.2	109.5
O3	P	OX0	104.6	109.5
C1	P	O2	109.3	109.5
C1	P	OX0	110.0	109.4
P	C1	H11C	109.5	109.5
P	C1	H12C	109.5	109.5
P	C1	H13C	109.4	109.4
O2	P	OX0	106.7	109.5
P	OX0	HX0	109.5	114.0
H51C	C5	H52C	109.5	109.5
H51C	C5	H53C	109.4	109.5
H52C	C5	H53C	109.5	109.5
H41C	C4	H42C	112.7	109.5
H31C	C3	H32C	113.4	109.5
H21C	C2	H22C	106.2	109.5
H11C	C1	H12C	109.5	109.5
H11C	C1	H13C	109.5	109.5
H12C	C1	H13C	109.5	109.5

Torsion Angles for CVX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	C2	50.6	180.0
C3	C4	C5	H41C	240.0	240.0
C3	C4	C5	H42C	118.2	120.0
C5	C4	C3	H31C	170.6	300.0
C5	C4	C3	H32C	292.8	60.0
H51C	C5	C4	H52C	240.0	240.0
H51C	C5	C4	H53C	120.0	120.0
H52C	C5	C4	H53C	240.0	240.0
H41C	C4	C5	H42C	238.2	240.0
C3	C4	C5	H51C	284.3	180.0
C3	C4	C5	H52C	44.3	300.0
C3	C4	C5	H53C	164.3	60.0
C5	C4	C3	H41C	120.0	120.0
C5	C4	C3	H42C	241.8	240.0
C4	C3	C2	O3	239.3	180.0
C2	C3	C4	H31C	240.0	240.0
C2	C3	C4	H32C	117.8	120.0
C4	C3	C2	H21C	359.3	300.0
C4	C3	C2	H22C	117.6	60.0
H41C	C4	C3	H42C	121.8	120.0
H31C	C3	C4	H32C	237.8	240.0
C2	C3	C4	H41C	290.6	60.0
C2	C3	C4	H42C	168.8	300.0
C4	C3	C2	H31C	120.0	120.0
C4	C3	C2	H32C	242.2	240.0
C3	C2	O3	P	172.8	180.0
O3	C2	C3	H21C	240.0	240.0
O3	C2	C3	H22C	121.6	120.0
H31C	C3	C2	H32C	122.2	120.0
H21C	C2	C3	H22C	241.7	240.0
O3	C2	C3	H31C	119.3	60.0
O3	C2	C3	H32C	357.1	300.0
C3	C2	O3	H21C	120.0	120.0
C3	C2	O3	H22C	238.4	240.0
C2	O3	P	C1	334.5	175.0
C2	O3	P	O2	210.2	55.0
C2	O3	P	OX0	96.7	295.0
H21C	C2	O3	H22C	118.4	120.0
P	O3	C2	H21C	52.8	60.0
P	O3	C2	H22C	294.4	300.0
C1	P	O3	O2	124.3	120.0
C1	P	O3	OX0	237.7	240.0
O3	P	C1	H11C	60.3	60.0
O3	P	C1	H12C	180.3	180.0
O3	P	C1	H13C	300.3	300.0
O2	P	O3	OX0	113.5	120.0
O3	P	OX0	HX0	303.0	300.1
O3	P	C1	O2	236.3	240.0
O3	P	C1	OX0	119.4	120.0
O2	P	C1	OX0	243.2	240.0
C1	P	OX0	HX0	70.0	60.1
H11C	C1	P	H12C	240.0	240.0
H11C	C1	P	H13C	120.0	120.0
H12C	C1	P	H13C	240.0	240.0
O3	P	O2	C1	129.0	120.0
O3	P	O2	OX0	247.9	240.0
C1	P	O2	OX0	118.9	119.9
O2	P	C1	H11C	184.1	180.0
O2	P	C1	H12C	304.1	300.0
O2	P	C1	H13C	64.1	60.0
O2	P	OX0	HX0	188.4	180.0
O3	P	OX0	C1	233.0	240.0
O3	P	OX0	O2	114.6	120.0
C1	P	OX0	O2	241.6	240.0
OX0	P	C1	H11C	300.9	300.0
OX0	P	C1	H12C	60.9	60.0
OX0	P	C1	H13C	180.9	180.0
H51C	C5	C4	C3	284.3	180.0
C4	C5	H51C	H52C	120.0	120.0
C4	C5	H51C	H53C	240.0	240.0
H51C	C5	C4	H41C	44.3	300.0
H51C	C5	C4	H42C	166.0	60.0
H52C	C5	H51C	H53C	120.0	120.0
H52C	C5	C4	C3	44.3	300.0
C4	C5	H52C	H51C	240.0	240.0
C4	C5	H52C	H53C	120.0	120.0
H52C	C5	C4	H41C	164.3	60.0
H52C	C5	C4	H42C	286.1	180.0
H51C	C5	H52C	H53C	240.0	239.9
H53C	C5	C4	C3	164.3	60.0
C4	C5	H53C	H51C	120.0	120.0
C4	C5	H53C	H52C	240.0	240.0
H53C	C5	C4	H41C	284.3	180.0
H53C	C5	C4	H42C	46.1	300.0
H51C	C5	H53C	H52C	120.0	120.1
C5	C4	H41C	C3	236.6	240.0
H41C	C4	C5	H51C	44.3	300.0
H41C	C4	C5	H52C	164.3	60.0
H41C	C4	C5	H53C	284.3	180.0
C5	C4	H41C	H42C	118.3	120.0
H41C	C4	C3	C2	290.6	60.0
C3	C4	H41C	H42C	241.7	240.0
H41C	C4	C3	H31C	50.6	180.0
H41C	C4	C3	H32C	172.8	300.0
C5	C4	H42C	C3	122.3	120.0
H42C	C4	C5	H51C	166.0	60.0
H42C	C4	C5	H52C	286.1	180.0
H42C	C4	C5	H53C	46.1	300.0
C5	C4	H42C	H41C	241.2	240.0
H42C	C4	C3	C2	168.8	300.0
C3	C4	H42C	H41C	118.9	120.0
H42C	C4	C3	H31C	288.8	60.0
H42C	C4	C3	H32C	51.0	180.0
C4	C3	H31C	C2	236.0	240.0
H31C	C3	C4	H41C	50.6	180.0
H31C	C3	C4	H42C	288.8	60.0
C4	C3	H31C	H32C	118.0	120.0
H31C	C3	C2	O3	119.3	60.0
C2	C3	H31C	H32C	242.0	240.0
H31C	C3	C2	H21C	239.3	180.0
H31C	C3	C2	H22C	357.6	300.0
C4	C3	H32C	C2	122.7	120.0
H32C	C3	C4	H41C	172.8	300.0
H32C	C3	C4	H42C	51.0	180.0
C4	C3	H32C	H31C	241.4	240.0
H32C	C3	C2	O3	357.1	300.0
C2	C3	H32C	H31C	118.7	120.0
H32C	C3	C2	H21C	117.1	60.0
H32C	C3	C2	H22C	235.5	180.0
C3	C2	H21C	O3	243.5	240.0
H21C	C2	C3	H31C	239.3	180.0
H21C	C2	C3	H32C	117.1	60.0
C3	C2	H21C	H22C	121.7	120.0
H21C	C2	O3	P	52.8	60.0
O3	C2	H21C	H22C	238.2	240.0
C3	C2	H22C	O3	117.7	120.0
H22C	C2	C3	H31C	357.6	300.0
H22C	C2	C3	H32C	235.5	180.0
C3	C2	H22C	H21C	238.9	240.0
H22C	C2	O3	P	294.4	300.0
O3	C2	H22C	H21C	121.2	120.0
H11C	C1	P	O2	184.1	180.0
H11C	C1	P	OX0	300.9	300.0
P	C1	H11C	H12C	120.0	120.0
P	C1	H11C	H13C	240.0	240.1
H12C	C1	H11C	H13C	120.0	120.1
H12C	C1	P	O2	304.1	300.0
H12C	C1	P	OX0	60.9	60.0
P	C1	H12C	H11C	240.0	240.0
P	C1	H12C	H13C	120.0	120.0
H11C	C1	H12C	H13C	240.0	240.0
H13C	C1	P	O2	64.1	60.0
H13C	C1	P	OX0	180.9	180.0
P	C1	H13C	H11C	120.0	119.9
P	C1	H13C	H12C	240.0	240.0
H11C	C1	H13C	H12C	120.0	120.0