PDB Chemical Component CVT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CVT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C19 |
O4 |
1.423 |
1.429 |
| O4 |
C17 |
1.386 |
1.360 |
| C20 |
O3 |
1.425 |
1.428 |
| O3 |
C16 |
1.372 |
1.359 |
| C17 |
C16 |
1.401 |
1.392 |
| C17 |
C18 |
1.395 |
1.383 |
| C16 |
C15 |
1.395 |
1.393 |
| C18 |
C13 |
1.396 |
1.397 |
| C15 |
O2 |
1.387 |
1.360 |
| C15 |
C14 |
1.396 |
1.382 |
| O2 |
C21 |
1.426 |
1.430 |
| C13 |
C14 |
1.406 |
1.398 |
| C13 |
C12 |
1.469 |
1.475 |
| O1 |
C12 |
1.240 |
1.216 |
| C12 |
N2 |
1.425 |
1.348 |
| N2 |
N1 |
1.370 |
1.402 |
| N1 |
C11 |
1.282 |
1.299 |
| C1 |
C6 |
1.406 |
1.388 |
| C1 |
C2 |
1.391 |
1.390 |
| C11 |
C2 |
1.467 |
1.471 |
| C6 |
C5 |
1.371 |
1.361 |
| C2 |
C3 |
1.459 |
1.462 |
| C5 |
C4 |
1.420 |
1.405 |
| C3 |
C4 |
1.422 |
1.416 |
| C3 |
C7 |
1.437 |
1.400 |
| C4 |
C10 |
1.424 |
1.405 |
| C7 |
C8 |
1.378 |
1.363 |
| C10 |
C9 |
1.371 |
1.362 |
| C8 |
C9 |
1.410 |
1.394 |
| C14 |
H10 |
1.080 |
1.080 |
| C5 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.079 |
1.080 |
| C11 |
H8 |
1.080 |
1.080 |
| C7 |
H4 |
1.080 |
1.081 |
| C8 |
H5 |
1.081 |
1.079 |
| C9 |
H6 |
1.080 |
1.081 |
| C10 |
H7 |
1.080 |
1.080 |
| N2 |
H9 |
1.000 |
0.970 |
| C1 |
H1 |
1.080 |
1.080 |
| C18 |
H11 |
1.080 |
1.079 |
| C19 |
H12 |
1.100 |
1.090 |
| C19 |
H13 |
1.100 |
1.090 |
| C19 |
H14 |
1.100 |
1.090 |
| C20 |
H15 |
1.100 |
1.090 |
| C20 |
H16 |
1.100 |
1.090 |
| C20 |
H17 |
1.100 |
1.090 |
| C21 |
H18 |
1.100 |
1.090 |
| C21 |
H20 |
1.100 |
1.090 |
| C21 |
H19 |
1.100 |
1.090 |
Bond Angles for CVT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C19 |
H12 |
109.5 |
109.5 |
| O4 |
C19 |
H13 |
109.5 |
109.4 |
| O4 |
C19 |
H14 |
109.5 |
109.4 |
| O3 |
C20 |
H15 |
109.5 |
109.5 |
| O3 |
C20 |
H16 |
109.5 |
109.5 |
| O3 |
C20 |
H17 |
109.5 |
109.5 |
| C17 |
C18 |
H11 |
120.0 |
120.1 |
| C16 |
C15 |
O2 |
118.2 |
119.9 |
| C15 |
O2 |
C21 |
122.0 |
116.9 |
| C15 |
C14 |
H10 |
120.4 |
120.0 |
| O2 |
C21 |
H18 |
109.5 |
109.5 |
| O2 |
C21 |
H20 |
109.5 |
109.5 |
| O2 |
C21 |
H19 |
109.4 |
109.5 |
| C13 |
C14 |
H10 |
120.3 |
120.0 |
| C13 |
C12 |
N2 |
122.1 |
119.9 |
| C12 |
N2 |
N1 |
122.5 |
120.0 |
| C12 |
N2 |
H9 |
118.8 |
120.0 |
| N1 |
C11 |
C2 |
120.7 |
120.0 |
| N1 |
C11 |
H8 |
119.6 |
120.0 |
| C1 |
C6 |
H3 |
119.5 |
119.1 |
| C11 |
C2 |
C1 |
120.1 |
120.7 |
| C2 |
C1 |
H1 |
119.6 |
119.7 |
| C11 |
C2 |
C3 |
120.4 |
120.7 |
| C2 |
C11 |
H8 |
119.6 |
119.9 |
| C6 |
C5 |
H2 |
119.6 |
119.6 |
| C5 |
C4 |
C10 |
118.9 |
121.3 |
| C3 |
C7 |
H4 |
119.8 |
120.2 |
| C4 |
C10 |
C9 |
121.2 |
119.6 |
| C4 |
C10 |
H7 |
119.4 |
120.3 |
| C7 |
C8 |
C9 |
120.9 |
120.9 |
| C8 |
C7 |
H4 |
119.8 |
120.2 |
| C7 |
C8 |
H5 |
119.5 |
119.6 |
| C10 |
C9 |
H6 |
120.1 |
119.5 |
| C9 |
C8 |
H5 |
119.5 |
119.6 |
| C8 |
C9 |
H6 |
120.1 |
119.5 |
| H12 |
C19 |
H13 |
109.4 |
109.5 |
| H12 |
C19 |
H14 |
109.5 |
109.5 |
| H13 |
C19 |
H14 |
109.5 |
109.5 |
| H15 |
C20 |
H16 |
109.5 |
109.4 |
| H15 |
C20 |
H17 |
109.4 |
109.5 |
| H16 |
C20 |
H17 |
109.5 |
109.4 |
| H18 |
C21 |
H20 |
109.4 |
109.4 |
| H18 |
C21 |
H19 |
109.5 |
109.4 |
| H20 |
C21 |
H19 |
109.5 |
109.5 |
Torsion Angles for CVT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H12 |
C19 |
O4 |
H13 |
240.0 |
240.0 |
| H12 |
C19 |
O4 |
H14 |
120.0 |
120.0 |
| H13 |
C19 |
O4 |
H14 |
240.0 |
240.0 |
| O4 |
C17 |
C18 |
H11 |
360.0 |
0.3 |
| H15 |
C20 |
O3 |
H16 |
240.0 |
240.0 |
| H15 |
C20 |
O3 |
H17 |
120.0 |
120.0 |
| H16 |
C20 |
O3 |
H17 |
240.0 |
240.0 |
| C17 |
C16 |
C15 |
O2 |
180.4 |
180.0 |
| C16 |
C15 |
O2 |
C21 |
190.8 |
180.0 |
| C16 |
C15 |
C14 |
H10 |
180.2 |
180.0 |
| C18 |
C13 |
C14 |
H10 |
179.8 |
180.0 |
| O2 |
C15 |
C14 |
H10 |
359.9 |
360.0 |
| C15 |
O2 |
C21 |
H18 |
180.0 |
300.0 |
| C15 |
O2 |
C21 |
H20 |
300.0 |
60.0 |
| C15 |
O2 |
C21 |
H19 |
60.0 |
180.0 |
| C13 |
C14 |
C15 |
H10 |
180.0 |
179.8 |
| H18 |
C21 |
O2 |
H20 |
240.0 |
240.0 |
| H18 |
C21 |
O2 |
H19 |
120.0 |
120.0 |
| H20 |
C21 |
O2 |
H19 |
240.0 |
240.0 |
| C15 |
C14 |
C13 |
H10 |
180.0 |
180.2 |
| C12 |
C13 |
C14 |
H10 |
359.4 |
0.0 |
| C13 |
C12 |
N2 |
N1 |
0.3 |
180.0 |
| C13 |
C12 |
N2 |
H9 |
180.3 |
360.0 |
| O1 |
C12 |
N2 |
H9 |
1.3 |
179.9 |
| C12 |
N2 |
N1 |
H9 |
180.0 |
179.9 |
| N2 |
N1 |
C11 |
C2 |
181.6 |
180.0 |
| N2 |
N1 |
C11 |
H8 |
1.6 |
359.9 |
| N1 |
C11 |
C2 |
C1 |
12.9 |
174.6 |
| N1 |
C11 |
C2 |
C3 |
191.3 |
354.2 |
| C2 |
C11 |
N1 |
H8 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
H2 |
180.3 |
180.0 |
| C2 |
C1 |
C6 |
H3 |
179.3 |
179.7 |
| C11 |
C2 |
C1 |
C3 |
178.4 |
179.6 |
| C1 |
C2 |
C11 |
H8 |
192.9 |
354.6 |
| N1 |
C11 |
C2 |
H8 |
180.0 |
180.0 |
| C11 |
C2 |
C1 |
H1 |
359.0 |
359.7 |
| C6 |
C5 |
C4 |
C10 |
163.5 |
180.0 |
| C11 |
C2 |
C3 |
C1 |
181.6 |
180.4 |
| C3 |
C2 |
C11 |
H8 |
11.3 |
174.3 |
| C2 |
C3 |
C7 |
H4 |
342.8 |
0.2 |
| C5 |
C4 |
C10 |
C9 |
197.2 |
180.0 |
| C5 |
C4 |
C10 |
H7 |
17.2 |
0.0 |
| C3 |
C4 |
C10 |
H7 |
180.7 |
179.7 |
| C11 |
C2 |
C3 |
C7 |
19.1 |
0.3 |
| C8 |
C7 |
C3 |
H4 |
180.0 |
179.7 |
| C3 |
C7 |
C8 |
H5 |
179.9 |
180.3 |
| C4 |
C10 |
C9 |
H6 |
179.7 |
180.0 |
| C3 |
C7 |
C8 |
H4 |
180.0 |
180.3 |
| C9 |
C8 |
C7 |
H5 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H6 |
180.0 |
180.0 |
| C4 |
C10 |
C9 |
H7 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H5 |
180.0 |
179.4 |
| C8 |
C9 |
C10 |
H6 |
180.0 |
180.6 |
| C4 |
C10 |
C9 |
C8 |
359.7 |
0.6 |
| C9 |
C8 |
C7 |
H4 |
179.9 |
180.1 |
| C7 |
C8 |
C9 |
H5 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H6 |
180.0 |
179.4 |
| H2 |
C5 |
C4 |
C10 |
343.5 |
0.0 |
| H3 |
C6 |
C5 |
H2 |
0.3 |
0.0 |
| N1 |
C11 |
H8 |
C2 |
180.0 |
180.0 |
| H8 |
C11 |
C2 |
C1 |
192.9 |
354.6 |
| H8 |
C11 |
C2 |
C3 |
11.3 |
174.3 |
| H4 |
C7 |
C8 |
C9 |
179.9 |
180.1 |
| H4 |
C7 |
C8 |
H5 |
359.9 |
0.0 |
| C7 |
C8 |
H5 |
C9 |
180.0 |
180.0 |
| H5 |
C8 |
C7 |
H4 |
359.9 |
0.0 |
| H5 |
C8 |
C9 |
H6 |
360.0 |
360.0 |
| H6 |
C9 |
C8 |
H5 |
360.0 |
360.0 |
| C4 |
C10 |
H7 |
C9 |
180.0 |
180.0 |
| H7 |
C10 |
C9 |
H6 |
359.7 |
360.0 |
| C12 |
N2 |
H9 |
N1 |
180.0 |
180.1 |
| H1 |
C1 |
C6 |
H3 |
359.3 |
360.0 |
| O4 |
C19 |
H12 |
H13 |
120.0 |
119.9 |
| O4 |
C19 |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
C19 |
H12 |
H14 |
120.0 |
120.1 |
| O4 |
C19 |
H13 |
H12 |
240.0 |
240.0 |
| O4 |
C19 |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
C19 |
H13 |
H14 |
240.0 |
239.9 |
| O4 |
C19 |
H14 |
H12 |
120.0 |
120.0 |
| O4 |
C19 |
H14 |
H13 |
240.0 |
240.1 |
| H12 |
C19 |
H14 |
H13 |
120.0 |
120.1 |
| O3 |
C20 |
H15 |
H16 |
120.0 |
120.0 |
| O3 |
C20 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C20 |
H15 |
H17 |
120.0 |
119.9 |
| O3 |
C20 |
H16 |
H15 |
240.0 |
240.0 |
| O3 |
C20 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C20 |
H16 |
H17 |
240.0 |
240.0 |
| O3 |
C20 |
H17 |
H15 |
120.0 |
120.0 |
| O3 |
C20 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
C20 |
H17 |
H16 |
120.0 |
119.9 |
| O2 |
C21 |
H18 |
H20 |
120.0 |
120.0 |
| O2 |
C21 |
H18 |
H19 |
240.0 |
240.0 |
| H20 |
C21 |
H18 |
H19 |
120.0 |
120.0 |
| O2 |
C21 |
H20 |
H18 |
240.0 |
240.0 |
| O2 |
C21 |
H20 |
H19 |
120.0 |
120.0 |
| H18 |
C21 |
H20 |
H19 |
240.0 |
240.1 |
| O2 |
C21 |
H19 |
H18 |
120.0 |
120.0 |
| O2 |
C21 |
H19 |
H20 |
240.0 |
240.0 |
| H18 |
C21 |
H19 |
H20 |
120.0 |
119.9 |