Ligand Depot Graph Search Summary

PDB Chemical Component CVR

Ideal Model

Chemical Description

Name	Cyclic adenosine 5'-diphosphocarbocyclic ribose
Formula	C16 H23 N5 O12 P2
Formal charge	0
Molecular weight	539.328 g/mol
Component type	NON-POLYMER

Chemical features

Atom count	58
Chiral atom count	9
Chiral atoms	N1 C1' C1D C2' C2D C3' C3D C4' C4D
Bond count	62
Aromatic bond count	5

Chemical Identifiers

Systematic name (ACDLabs)

(2R,3S,4R,5R,8S,10S,13R,14S,15R,16R,24E)-24-imino-7,9,11,25-tetraoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-triene-3,4,8,10,14,15-hexol 8,10-dioxide (non-preferred name)

Chemical Descriptors

Stereo SMILES (CACTVS)	O[C@H]1[C@@H](O)[C@H]2C[C@@H]1CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=N)[N@]2C=Nc45
SMILES (CACTVS)	O[CH]1[CH](O)[CH]2C[CH]1CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=N)[N]2C=Nc45
Stereo SMILES (OpenEye)	[H]/N=C/1\c2c3n(cn2)[C@H]4[C@@H]([C@@H]([C@H](O4)CO[P@@](=O)(O[P@](=O)(OC[C@H]5C[C@@H](N1C=N3)[C@@H]([C@@H]5O)O)O)O)O)O
InChI descriptor	InChI=1S/C16H23N5O12P2/c17-14-9-15-19-5-20(14)7-1-6(10(22)11(7)23)2-30-34(26,27)33-35(28,29)31-3-8-12(24)13(25)16(32-8)21(15)4-18-9/h4-8,10-13,16-17,22-25H,1-3H2,(H,26,27)(H,28,29)/b17-14+/t6-,7-,8-,10-,11+,12-,13-,16-/m1/s1
InChIKey descriptor	WXTUXMLWWNQYJT-BKYLUIDASA-N

Status Information