PDB Chemical Component CVK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CVK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C2 |
1.378 |
1.383 |
| C3 |
C6 |
1.362 |
1.387 |
| O7 |
C6 |
1.383 |
1.361 |
| O7 |
C8 |
1.435 |
1.432 |
| C2 |
C1 |
1.381 |
1.380 |
| C6 |
C5 |
1.406 |
1.388 |
| C8 |
C9 |
1.530 |
1.535 |
| C1 |
C4 |
1.378 |
1.393 |
| C5 |
C4 |
1.376 |
1.399 |
| C5 |
O10 |
1.363 |
1.360 |
| C4 |
C11 |
1.485 |
1.483 |
| C9 |
O10 |
1.432 |
1.431 |
| C12 |
C11 |
1.365 |
1.393 |
| C12 |
C13 |
1.387 |
1.380 |
| C11 |
C16 |
1.369 |
1.395 |
| C13 |
C14 |
1.385 |
1.388 |
| C16 |
C15 |
1.405 |
1.382 |
| C26 |
N25 |
1.498 |
1.469 |
| C14 |
C15 |
1.366 |
1.395 |
| C14 |
N17 |
1.332 |
1.399 |
| C22 |
C23 |
1.394 |
1.380 |
| C22 |
C21 |
1.348 |
1.384 |
| C23 |
C18 |
1.357 |
1.389 |
| C15 |
O28 |
1.364 |
1.359 |
| C27 |
N25 |
1.495 |
1.470 |
| C21 |
C20 |
1.400 |
1.382 |
| C18 |
N17 |
1.387 |
1.397 |
| C18 |
C19 |
1.397 |
1.390 |
| N25 |
C24 |
1.523 |
1.469 |
| C20 |
C19 |
1.395 |
1.381 |
| C20 |
C24 |
1.517 |
1.507 |
| O28 |
C29 |
1.427 |
1.430 |
| C29 |
H1 |
1.100 |
1.090 |
| C29 |
H2 |
1.100 |
1.090 |
| C29 |
H3 |
1.100 |
1.090 |
| N17 |
H4 |
1.000 |
0.970 |
| C23 |
H5 |
1.080 |
1.080 |
| C22 |
H6 |
1.080 |
1.080 |
| C21 |
H7 |
1.080 |
1.080 |
| C24 |
H8 |
1.100 |
1.090 |
| C24 |
H9 |
1.100 |
1.090 |
| C27 |
H11 |
1.100 |
1.090 |
| C27 |
H12 |
1.100 |
1.090 |
| C27 |
H13 |
1.100 |
1.090 |
| C26 |
H14 |
1.099 |
1.090 |
| C26 |
H15 |
1.100 |
1.090 |
| C26 |
H16 |
1.100 |
1.090 |
| C19 |
H17 |
1.080 |
1.079 |
| C13 |
H18 |
1.080 |
1.080 |
| C12 |
H19 |
1.080 |
1.081 |
| C16 |
H20 |
1.080 |
1.080 |
| C1 |
H21 |
1.080 |
1.080 |
| C9 |
H22 |
1.099 |
1.091 |
| C9 |
H23 |
1.100 |
1.090 |
| C8 |
H24 |
1.101 |
1.090 |
| C8 |
H25 |
1.100 |
1.090 |
| C3 |
H26 |
1.080 |
1.081 |
| C2 |
H27 |
1.080 |
1.080 |
Bond Angles for CVK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C3 |
H26 |
120.5 |
119.8 |
| C3 |
C2 |
H27 |
119.5 |
119.9 |
| O7 |
C8 |
H24 |
109.1 |
109.7 |
| O7 |
C8 |
H25 |
109.1 |
109.7 |
| C2 |
C1 |
H21 |
119.5 |
120.0 |
| C8 |
C9 |
H22 |
108.7 |
109.7 |
| C8 |
C9 |
H23 |
108.7 |
109.8 |
| C12 |
C11 |
C16 |
117.4 |
119.9 |
| C11 |
C12 |
H19 |
118.9 |
119.9 |
| C12 |
C13 |
H18 |
119.9 |
119.9 |
| C11 |
C16 |
H20 |
119.4 |
120.1 |
| C14 |
N17 |
H4 |
114.1 |
120.0 |
| C22 |
C23 |
H5 |
118.1 |
120.0 |
| C22 |
C21 |
C20 |
118.5 |
120.1 |
| C21 |
C22 |
H6 |
120.2 |
119.9 |
| C22 |
C21 |
H7 |
120.8 |
119.9 |
| C23 |
C18 |
C19 |
116.5 |
119.8 |
| C21 |
C20 |
C19 |
121.0 |
120.1 |
| C21 |
C20 |
C24 |
117.9 |
119.9 |
| C20 |
C21 |
H7 |
120.7 |
120.0 |
| C18 |
N17 |
H4 |
114.1 |
120.0 |
| C18 |
C19 |
C20 |
120.2 |
119.9 |
| C18 |
C19 |
H17 |
119.9 |
120.0 |
| N25 |
C24 |
H8 |
109.3 |
109.5 |
| N25 |
C24 |
H9 |
109.3 |
109.5 |
| C24 |
C20 |
C19 |
121.0 |
120.0 |
| C20 |
C19 |
H17 |
119.9 |
120.1 |
| C20 |
C24 |
H8 |
109.3 |
109.4 |
| C20 |
C24 |
H9 |
109.3 |
109.5 |
| O28 |
C29 |
H1 |
109.5 |
109.4 |
| O28 |
C29 |
H2 |
109.4 |
109.4 |
| O28 |
C29 |
H3 |
109.5 |
109.5 |
| H1 |
C29 |
H2 |
109.5 |
109.5 |
| H1 |
C29 |
H3 |
109.4 |
109.5 |
| H2 |
C29 |
H3 |
109.5 |
109.5 |
| H8 |
C24 |
H9 |
109.5 |
109.5 |
| H11 |
C27 |
H12 |
109.5 |
109.5 |
| H11 |
C27 |
H13 |
109.5 |
109.5 |
| H12 |
C27 |
H13 |
109.5 |
109.5 |
| H14 |
C26 |
H15 |
109.4 |
109.4 |
| H14 |
C26 |
H16 |
109.5 |
109.5 |
| H15 |
C26 |
H16 |
109.5 |
109.5 |
| H22 |
C9 |
H23 |
109.4 |
109.6 |
| H24 |
C8 |
H25 |
109.5 |
109.7 |
Torsion Angles for CVK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
C1 |
H21 |
179.6 |
180.1 |
| C6 |
O7 |
C8 |
H24 |
155.8 |
286.5 |
| C6 |
O7 |
C8 |
H25 |
275.4 |
165.9 |
| O7 |
C8 |
C9 |
H22 |
71.4 |
180.6 |
| O7 |
C8 |
C9 |
H23 |
190.5 |
60.1 |
| H24 |
C8 |
O7 |
H25 |
240.5 |
120.6 |
| H22 |
C9 |
C8 |
H23 |
241.0 |
120.5 |
| C4 |
C11 |
C12 |
H19 |
359.7 |
0.3 |
| C4 |
C11 |
C16 |
H20 |
358.5 |
360.0 |
| C11 |
C12 |
C13 |
H18 |
182.3 |
180.0 |
| C12 |
C11 |
C16 |
H20 |
179.6 |
180.2 |
| C16 |
C11 |
C12 |
H19 |
178.6 |
180.1 |
| C13 |
C14 |
N17 |
H4 |
169.3 |
187.6 |
| C26 |
N25 |
C24 |
H8 |
90.3 |
70.0 |
| C26 |
N25 |
C24 |
H9 |
210.1 |
310.0 |
| C18 |
N17 |
C14 |
H4 |
180.0 |
180.0 |
| C22 |
C23 |
C18 |
C19 |
355.6 |
0.2 |
| C21 |
C22 |
C23 |
H5 |
182.3 |
180.0 |
| C22 |
C21 |
C20 |
C19 |
0.3 |
359.7 |
| C22 |
C21 |
C20 |
C24 |
175.9 |
180.0 |
| C20 |
C21 |
C22 |
H7 |
180.0 |
180.1 |
| C23 |
C18 |
N17 |
H4 |
223.0 |
222.5 |
| C23 |
C18 |
C19 |
C20 |
4.4 |
359.5 |
| C23 |
C18 |
C19 |
H17 |
184.4 |
179.7 |
| C15 |
O28 |
C29 |
H1 |
180.0 |
300.1 |
| C15 |
O28 |
C29 |
H2 |
300.0 |
60.1 |
| C15 |
O28 |
C29 |
H3 |
60.0 |
180.0 |
| C27 |
N25 |
C24 |
H8 |
216.9 |
306.1 |
| C27 |
N25 |
C24 |
H9 |
336.7 |
186.0 |
| C20 |
C21 |
C22 |
H6 |
179.9 |
180.1 |
| C22 |
C21 |
C20 |
H7 |
180.0 |
179.9 |
| C18 |
C19 |
C20 |
C21 |
357.5 |
0.6 |
| C24 |
C20 |
C21 |
C19 |
175.6 |
180.3 |
| C21 |
C20 |
C19 |
H17 |
177.5 |
180.3 |
| C21 |
C20 |
C24 |
H8 |
166.8 |
210.0 |
| C21 |
C20 |
C24 |
H9 |
47.0 |
330.0 |
| C14 |
N17 |
C18 |
H4 |
180.0 |
180.0 |
| C21 |
C20 |
C19 |
C18 |
357.5 |
0.6 |
| C19 |
C18 |
N17 |
H4 |
51.3 |
42.3 |
| C24 |
C20 |
C19 |
C18 |
182.0 |
180.3 |
| C20 |
C19 |
C18 |
H17 |
180.0 |
179.7 |
| N25 |
C24 |
C20 |
C19 |
102.4 |
270.3 |
| C20 |
C24 |
N25 |
H8 |
239.9 |
120.0 |
| C20 |
C24 |
N25 |
H9 |
120.1 |
240.0 |
| H8 |
C24 |
N25 |
H9 |
240.2 |
120.0 |
| C21 |
C20 |
C19 |
C24 |
175.4 |
180.3 |
| C19 |
C20 |
C21 |
H7 |
180.3 |
179.7 |
| C18 |
C19 |
C20 |
H17 |
180.0 |
180.3 |
| C19 |
C20 |
C24 |
H8 |
342.4 |
30.3 |
| C19 |
C20 |
C24 |
H9 |
222.5 |
150.3 |
| C21 |
C20 |
C24 |
C19 |
184.4 |
179.7 |
| C24 |
C20 |
C21 |
H7 |
355.9 |
0.0 |
| C18 |
C19 |
C20 |
C24 |
182.0 |
180.3 |
| N25 |
C24 |
C20 |
H8 |
120.1 |
240.0 |
| N25 |
C24 |
C20 |
H9 |
239.9 |
120.0 |
| C24 |
C20 |
C19 |
H17 |
2.0 |
0.0 |
| H8 |
C24 |
C20 |
H9 |
119.8 |
240.0 |
| H1 |
C29 |
O28 |
H2 |
240.0 |
240.0 |
| H1 |
C29 |
O28 |
H3 |
120.0 |
120.1 |
| H2 |
C29 |
O28 |
H3 |
240.0 |
240.0 |
| O28 |
C29 |
H1 |
H2 |
120.0 |
119.9 |
| O28 |
C29 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C29 |
H1 |
H3 |
120.0 |
120.1 |
| O28 |
C29 |
H2 |
H1 |
240.0 |
240.1 |
| O28 |
C29 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C29 |
H2 |
H3 |
240.0 |
239.9 |
| O28 |
C29 |
H3 |
H1 |
120.0 |
120.0 |
| O28 |
C29 |
H3 |
H2 |
240.0 |
240.1 |
| H1 |
C29 |
H3 |
H2 |
120.0 |
120.1 |
| H5 |
C23 |
C18 |
C19 |
175.6 |
180.2 |
| H6 |
C22 |
C23 |
H5 |
2.3 |
360.0 |
| H6 |
C22 |
C21 |
C20 |
179.9 |
180.1 |
| H6 |
C22 |
C21 |
H7 |
359.9 |
360.0 |
| C22 |
C21 |
H7 |
C20 |
180.0 |
180.1 |
| H7 |
C21 |
C22 |
H6 |
359.9 |
360.0 |
| H7 |
C21 |
C20 |
C19 |
180.3 |
179.7 |
| H7 |
C21 |
C20 |
C24 |
355.9 |
0.0 |
| N25 |
C24 |
H8 |
H9 |
119.7 |
240.0 |
| H8 |
C24 |
C20 |
C19 |
342.4 |
30.3 |
| C20 |
C24 |
H8 |
H9 |
240.3 |
120.0 |
| N25 |
C24 |
H9 |
H8 |
240.3 |
120.0 |
| H9 |
C24 |
C20 |
C19 |
222.5 |
150.3 |
| C20 |
C24 |
H9 |
H8 |
119.7 |
240.0 |
| H12 |
C27 |
H11 |
H13 |
120.0 |
120.0 |
| H11 |
C27 |
H12 |
H13 |
240.0 |
240.0 |
| H11 |
C27 |
H13 |
H12 |
120.0 |
120.0 |
| H15 |
C26 |
H14 |
H16 |
120.0 |
120.0 |
| H14 |
C26 |
H15 |
H16 |
240.0 |
240.0 |
| H14 |
C26 |
H16 |
H15 |
120.0 |
120.0 |
| C18 |
C19 |
H17 |
C20 |
180.0 |
179.7 |
| H19 |
C12 |
C11 |
C16 |
178.6 |
180.1 |
| H19 |
C12 |
C13 |
H18 |
2.3 |
359.7 |
| C8 |
C9 |
H22 |
H23 |
118.5 |
239.3 |
| C8 |
C9 |
H23 |
H22 |
241.5 |
120.6 |
| O7 |
C8 |
H24 |
H25 |
119.3 |
239.4 |
| H24 |
C8 |
C9 |
H22 |
311.2 |
300.3 |
| H24 |
C8 |
C9 |
H23 |
70.2 |
179.7 |
| O7 |
C8 |
H25 |
H24 |
240.7 |
120.6 |
| H25 |
C8 |
C9 |
H22 |
191.7 |
60.9 |
| H25 |
C8 |
C9 |
H23 |
310.7 |
300.4 |
| H26 |
C3 |
C2 |
H27 |
1.0 |
0.4 |
| H27 |
C2 |
C3 |
H26 |
1.0 |
0.4 |
| H27 |
C2 |
C1 |
H21 |
359.6 |
359.8 |