PDB Chemical Component CVI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CVI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.496	1.464
C1	C8	1.457	1.464
C1	C14	1.487	1.464
C2	C3	1.441	1.405
C2	C7	1.453	1.405
C3	C4	1.412	1.363
C3	H31	1.103	1.080
C4	C5	1.462	1.398
C4	H41	1.103	1.080
C5	C6	1.457	1.399
C5	N1	1.416	1.371
C6	C7	1.386	1.363
C6	H61	1.103	1.080
C7	H71	1.102	1.079
C8	C9	1.433	1.405
C8	C13	1.449	1.405
C9	C10	1.406	1.363
C9	H91	1.104	1.080
C10	C11	1.481	1.399
C10	H101	1.103	1.080
C11	C12	1.430	1.399
C11	N2	1.388	1.370
C12	C13	1.387	1.362
C12	H121	1.103	1.080
C13	H131	1.103	1.080
C14	C15	1.448	1.405
C14	C19	1.451	1.405
C15	C16	1.391	1.362
C15	H151	1.103	1.080
C16	C17	1.423	1.399
C16	H161	1.102	1.081
C17	C18	1.446	1.399
C17	N3	1.364	1.371
C18	C19	1.403	1.362
C18	H181	1.103	1.080
C19	H191	1.104	1.080
C20	N1	1.462	1.465
C20	H201	1.116	1.089
C20	H202	1.114	1.090
C20	H203	1.114	1.089
C21	N1	1.470	1.465
C21	H211	1.116	1.090
C21	H212	1.115	1.089
C21	H213	1.115	1.090
C22	N2	1.485	1.465
C22	H221	1.114	1.091
C22	H222	1.115	1.089
C22	H223	1.115	1.090
C23	N2	1.456	1.465
C23	H231	1.114	1.090
C23	H232	1.115	1.090
C23	H233	1.115	1.091
C24	N3	1.442	1.464
C24	H241	1.115	1.091
C24	H242	1.115	1.090
C24	H243	1.116	1.089
C25	N3	1.456	1.465
C25	H251	1.115	1.090
C25	H252	1.114	1.090
C25	H253	1.115	1.091

Bond Angles for CVI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C8	122.6	120.0
C2	C1	C14	119.6	120.0
C1	C2	C3	122.3	120.1
C1	C2	C7	121.5	120.0
C8	C1	C14	117.5	120.0
C1	C8	C9	122.7	120.1
C1	C8	C13	120.8	120.1
C1	C14	C15	119.8	120.1
C1	C14	C19	124.0	120.1
C3	C2	C7	116.2	119.9
C2	C3	C4	122.2	119.9
C2	C3	H31	120.0	120.1
C2	C7	C6	123.0	119.9
C2	C7	H71	121.0	120.0
C4	C3	H31	117.8	120.0
C3	C4	C5	120.6	120.1
C3	C4	H41	118.0	119.9
C5	C4	H41	121.4	120.0
C4	C5	C6	117.2	120.2
C4	C5	N1	120.3	119.9
C6	C5	N1	122.5	119.9
C5	C6	C7	120.8	120.0
C5	C6	H61	122.1	120.0
C5	N1	C20	121.5	120.0
C5	N1	C21	121.6	120.0
C7	C6	H61	117.1	119.9
C6	C7	H71	116.0	120.0
C9	C8	C13	116.5	119.9
C8	C9	C10	121.1	119.9
C8	C9	H91	120.4	120.1
C8	C13	C12	123.5	119.9
C8	C13	H131	120.5	120.0
C10	C9	H91	118.5	120.0
C9	C10	C11	121.5	120.1
C9	C10	H101	116.6	119.9
C11	C10	H101	122.0	120.0
C10	C11	C12	116.6	120.1
C10	C11	N2	122.3	119.9
C12	C11	N2	121.0	119.9
C11	C12	C13	120.8	120.1
C11	C12	H121	121.2	119.9
C11	N2	C22	122.6	120.0
C11	N2	C23	123.3	120.0
C13	C12	H121	118.0	120.0
C12	C13	H131	116.0	120.1
C15	C14	C19	116.1	119.8
C14	C15	C16	122.2	119.9
C14	C15	H151	121.0	120.1
C14	C19	C18	121.3	119.9
C14	C19	H191	121.1	120.0
C16	C15	H151	116.8	120.0
C15	C16	C17	121.5	120.1
C15	C16	H161	118.1	120.0
C17	C16	H161	120.4	120.0
C16	C17	C18	117.5	120.1
C16	C17	N3	121.0	119.9
C18	C17	N3	121.5	119.9
C17	C18	C19	121.3	120.1
C17	C18	H181	120.9	120.0
C17	N3	C24	123.5	120.0
C17	N3	C25	122.1	120.0
C19	C18	H181	117.8	120.0
C18	C19	H191	117.7	120.0
N1	C20	H201	121.4	109.4
N1	C20	H202	107.9	109.5
N1	C20	H203	108.0	109.5
C20	N1	C21	116.9	120.0
H201	C20	H202	107.9	109.5
H201	C20	H203	107.9	109.5
H202	C20	H203	102.0	109.4
N1	C21	H211	121.6	109.4
N1	C21	H212	107.9	109.4
N1	C21	H213	107.9	109.4
H211	C21	H212	107.9	109.6
H211	C21	H213	107.8	109.4
H212	C21	H213	102.0	109.5
N2	C22	H221	122.6	109.4
N2	C22	H222	107.5	109.5
N2	C22	H223	107.5	109.5
C22	N2	C23	114.0	120.0
H221	C22	H222	107.6	109.5
H221	C22	H223	107.6	109.5
H222	C22	H223	102.2	109.5
N2	C23	H231	123.4	109.5
N2	C23	H232	107.3	109.5
N2	C23	H233	107.3	109.5
H231	C23	H232	107.3	109.5
H231	C23	H233	107.3	109.4
H232	C23	H233	102.4	109.4
N3	C24	H241	123.6	109.5
N3	C24	H242	107.3	109.5
N3	C24	H243	107.2	109.5
C24	N3	C25	114.3	120.0
H241	C24	H242	107.1	109.4
H241	C24	H243	107.2	109.4
H242	C24	H243	102.4	109.4
N3	C25	H251	122.1	109.5
N3	C25	H252	107.7	109.5
N3	C25	H253	107.7	109.5
H251	C25	H252	107.8	109.5
H251	C25	H253	107.7	109.4
H252	C25	H253	102.2	109.4

Torsion Angles for CVI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	C1	C2	C14	185.8	180.0
C2	C1	C8	C9	285.2	245.0
C2	C1	C8	C13	105.9	64.7
C2	C1	C14	C15	150.7	180.0
C2	C1	C14	C19	329.4	359.8
C3	C2	C1	C7	181.6	180.0
C1	C2	C3	C4	177.9	180.0
C1	C2	C3	H31	357.9	0.1
C1	C2	C7	C6	182.0	179.8
C1	C2	C7	H71	1.9	359.9
C2	C1	C8	C14	174.4	180.0
C8	C1	C2	C3	129.8	245.0
C8	C1	C2	C7	308.2	65.0
C8	C1	C14	C15	325.2	360.0
C8	C1	C14	C19	143.9	179.8
C9	C8	C1	C13	179.4	180.3
C1	C8	C9	C10	180.8	180.0
C1	C8	C9	H91	0.8	0.0
C1	C8	C13	C12	179.1	179.7
C1	C8	C13	H131	359.1	0.3
C2	C1	C14	C8	185.5	180.0
C14	C1	C2	C3	304.1	65.0
C14	C1	C2	C7	122.4	245.0
C14	C1	C8	C9	110.9	65.0
C14	C1	C8	C13	291.5	244.7
C15	C14	C1	C19	181.3	180.2
C1	C14	C15	C16	178.6	179.9
C1	C14	C15	H151	358.6	360.0
C1	C14	C19	C18	181.3	179.8
C1	C14	C19	H191	1.4	0.2
C3	C2	C1	C8	129.8	245.0
C3	C2	C1	C14	304.1	65.0
C1	C2	C3	C7	178.4	180.0
C3	C2	C7	C6	0.4	359.8
C3	C2	C7	H71	180.4	180.0
C4	C3	C2	H31	180.0	179.9
C2	C3	C4	C5	0.0	0.0
C2	C3	C4	H41	180.0	180.1
C7	C2	C1	C8	308.2	65.0
C7	C2	C1	C14	122.4	245.0
C1	C2	C7	C3	181.5	180.0
C7	C2	C3	C4	359.5	359.9
C7	C2	C3	H31	179.5	180.0
C5	C6	C7	C2	0.2	0.5
C2	C7	C6	H61	180.2	179.9
C6	C7	C2	H71	180.0	179.8
C4	C3	C2	C7	359.5	359.9
C2	C3	C4	H31	180.0	180.1
C5	C4	C3	H41	180.0	180.0
C3	C4	C5	C6	0.6	0.3
C3	C4	C5	N1	181.3	180.0
H31	C3	C2	C7	179.5	180.0
C2	C3	H31	C4	180.0	179.9
H31	C3	C4	C5	180.0	180.0
H31	C3	C4	H41	0.1	360.0
C5	C4	C3	H31	180.0	180.0
C3	C4	C5	H41	180.0	180.0
C6	C5	C4	N1	179.3	180.3
C4	C5	C6	C7	359.3	359.5
C4	C5	C6	H61	179.4	180.0
C4	C5	N1	C20	175.6	0.0
C4	C5	N1	C21	359.3	180.0
H41	C4	C3	H31	0.1	360.0
C3	C4	H41	C5	180.0	180.0
H41	C4	C5	C6	180.6	180.2
H41	C4	C5	N1	1.2	360.0
C2	C7	C6	C5	0.2	0.5
C6	C5	C4	H41	180.6	180.2
C4	C5	C6	N1	180.7	179.7
C6	C5	N1	C20	356.3	179.8
C6	C5	N1	C21	180.0	359.7
C7	C6	C5	H61	180.0	179.4
C5	C6	C7	H71	180.2	180.3
N1	C5	C4	H41	1.2	360.0
C4	C5	N1	C6	179.3	180.3
N1	C5	C6	C7	178.6	179.8
N1	C5	C6	H61	358.6	0.3
C5	N1	C20	H201	180.0	180.0
C5	N1	C20	H202	305.2	300.0
C5	N1	C20	H203	54.8	60.0
C20	N1	C5	C21	176.3	180.0
C5	N1	C21	H211	180.0	270.0
C5	N1	C21	H212	305.2	30.0
C5	N1	C21	H213	54.7	150.1
C2	C7	C6	H71	180.0	180.2
C7	C6	C5	N1	178.6	179.8
C5	C6	C7	H61	180.0	180.6
H61	C6	C5	N1	358.6	0.3
C5	C6	H61	C7	180.0	179.4
H61	C6	C7	H71	0.2	359.8
C2	C7	H71	C6	180.0	179.8
H71	C7	C6	H61	0.2	359.8
C9	C8	C1	C14	110.9	65.0
C1	C8	C9	C13	180.6	179.7
C9	C8	C13	C12	359.7	359.5
C9	C8	C13	H131	179.7	180.0
C10	C9	C8	H91	180.0	180.0
C8	C9	C10	C11	360.0	360.0
C8	C9	C10	H101	180.0	180.0
C13	C8	C1	C14	291.5	244.7
C1	C8	C13	C9	179.4	180.3
C13	C8	C9	C10	0.2	0.2
C13	C8	C9	H91	180.2	180.3
C11	C12	C13	C8	0.2	0.6
C8	C13	C12	H121	180.2	180.3
C12	C13	C8	H131	180.0	179.5
C10	C9	C8	C13	0.2	0.2
C8	C9	C10	H91	180.0	180.0
C11	C10	C9	H101	180.0	180.0
C9	C10	C11	C12	359.9	0.1
C9	C10	C11	N2	179.4	180.0
H91	C9	C8	C13	180.2	180.3
C8	C9	H91	C10	180.0	180.0
H91	C9	C10	C11	180.0	180.0
H91	C9	C10	H101	0.0	0.0
C11	C10	C9	H91	180.0	180.0
C9	C10	C11	H101	180.0	180.0
C12	C11	C10	N2	180.5	180.1
C10	C11	C12	C13	360.0	359.7
C10	C11	C12	H121	180.0	180.0
C10	C11	N2	C22	180.6	354.2
C10	C11	N2	C23	0.1	174.2
H101	C10	C9	H91	0.0	0.0
C9	C10	H101	C11	180.0	180.0
H101	C10	C11	C12	179.9	180.0
H101	C10	C11	N2	359.4	359.9
C8	C13	C12	C11	0.2	0.6
C12	C11	C10	H101	179.9	180.0
C10	C11	C12	N2	179.5	179.9
C12	C11	N2	C22	0.1	174.1
C12	C11	N2	C23	179.6	354.1
C13	C12	C11	H121	180.0	179.7
C11	C12	C13	H131	180.2	180.0
N2	C11	C10	H101	359.4	359.9
C10	C11	N2	C12	180.5	180.1
N2	C11	C12	C13	180.5	179.8
N2	C11	C12	H121	0.5	0.1
C11	N2	C22	H221	180.0	5.0
C11	N2	C22	H222	305.3	125.0
C11	N2	C22	H223	54.7	245.1
C22	N2	C11	C23	180.5	180.0
C11	N2	C23	H231	180.0	90.0
C11	N2	C23	H232	305.3	210.0
C11	N2	C23	H233	54.7	330.0
C8	C13	C12	H131	180.0	180.5
C13	C12	C11	N2	180.5	179.8
C11	C12	C13	H121	180.0	180.3
H121	C12	C11	N2	0.5	0.1
C11	C12	H121	C13	180.0	179.7
H121	C12	C13	H131	0.2	359.7
C8	C13	H131	C12	180.0	179.5
H131	C13	C12	H121	0.2	359.7
C1	C14	C15	C19	178.8	179.8
C15	C14	C19	C18	0.1	359.5
C15	C14	C19	H191	180.2	180.0
C16	C15	C14	H151	180.0	180.0
C14	C15	C16	C17	360.0	0.1
C14	C15	C16	H161	180.0	180.0
C1	C14	C19	C15	181.2	180.2
C19	C14	C15	C16	359.8	0.2
C19	C14	C15	H151	179.8	180.2
C17	C18	C19	C14	0.2	0.5
C14	C19	C18	H181	180.2	180.2
C18	C19	C14	H191	180.0	179.5
C16	C15	C14	C19	359.8	0.2
C14	C15	C16	H151	180.0	180.0
C17	C16	C15	H161	180.0	180.1
C15	C16	C17	C18	0.3	359.9
C15	C16	C17	N3	180.3	179.9
H151	C15	C14	C19	179.8	180.2
C14	C15	H151	C16	180.0	180.0
H151	C15	C16	C17	180.0	180.1
H151	C15	C16	H161	360.0	360.0
C17	C16	C15	H151	180.0	180.1
C15	C16	C17	H161	180.0	179.9
C18	C17	C16	N3	180.0	180.0
C16	C17	C18	C19	359.6	359.8
C16	C17	C18	H181	179.6	180.1
C16	C17	N3	C24	215.8	5.4
C16	C17	N3	C25	35.6	185.5
H161	C16	C15	H151	360.0	360.0
C15	C16	H161	C17	180.0	180.1
H161	C16	C17	C18	180.4	180.0
H161	C16	C17	N3	0.3	0.0
C14	C19	C18	C17	0.2	0.5
C18	C17	C16	H161	180.4	180.0
C16	C17	C18	N3	180.0	180.0
C18	C17	N3	C24	35.8	185.5
C18	C17	N3	C25	215.5	5.5
C19	C18	C17	H181	180.0	179.7
C17	C18	C19	H191	180.1	180.0
N3	C17	C16	H161	0.3	0.0
C16	C17	N3	C18	180.0	180.0
N3	C17	C18	C19	179.6	179.8
N3	C17	C18	H181	359.6	0.0
C17	N3	C24	H241	180.0	355.0
C17	N3	C24	H242	305.3	115.0
C17	N3	C24	H243	54.7	235.0
C24	N3	C17	C25	180.2	180.0
C17	N3	C25	H251	180.0	59.9
C17	N3	C25	H252	305.3	180.0
C17	N3	C25	H253	54.8	300.0
C14	C19	C18	H191	180.0	180.5
C19	C18	C17	N3	179.6	179.8
C17	C18	C19	H181	180.0	180.3
H181	C18	C17	N3	359.6	0.0
C17	C18	H181	C19	180.0	179.7
H181	C18	C19	H191	0.2	359.7
C14	C19	H191	C18	180.0	179.5
H191	C19	C18	H181	0.2	359.7
C5	N1	C20	C21	183.5	180.0
H201	C20	N1	H202	234.8	240.0
H201	C20	N1	H203	125.3	120.0
H202	C20	N1	H203	250.5	240.0
C20	N1	C21	H211	3.5	89.9
C20	N1	C21	H212	128.8	210.0
C20	N1	C21	H213	238.3	330.0
N1	C20	H201	H202	125.2	120.0
N1	C20	H201	H203	234.7	240.0
H201	C20	N1	C21	356.5	0.0
H202	C20	H201	H203	109.5	120.0
N1	C20	H202	H201	227.1	240.0
N1	C20	H202	H203	113.6	120.0
H202	C20	N1	C21	121.7	120.0
H201	C20	H202	H203	246.5	240.0
N1	C20	H203	H201	132.9	120.0
N1	C20	H203	H202	246.5	240.0
H203	C20	N1	C21	231.2	240.0
H201	C20	H203	H202	113.5	120.0
C5	N1	C21	C20	176.5	180.0
C21	N1	C20	H201	356.5	0.0
C21	N1	C20	H202	121.7	120.0
C21	N1	C20	H203	231.2	240.0
H211	C21	N1	H212	234.7	239.9
H211	C21	N1	H213	125.2	119.9
H212	C21	N1	H213	250.5	240.0
N1	C21	H211	H212	125.3	120.0
N1	C21	H211	H213	234.7	240.1
H212	C21	H211	H213	109.5	120.1
N1	C21	H212	H211	226.9	240.0
N1	C21	H212	H213	113.5	120.0
H211	C21	H212	H213	246.6	240.0
N1	C21	H213	H211	133.0	119.9
N1	C21	H213	H212	246.5	240.0
H211	C21	H213	H212	113.4	120.1
C11	N2	C22	C23	179.5	180.0
H221	C22	N2	H222	234.8	240.0
H221	C22	N2	H223	125.3	120.0
H222	C22	N2	H223	250.6	239.9
C22	N2	C23	H231	359.5	270.0
C22	N2	C23	H232	124.8	30.0
C22	N2	C23	H233	234.2	150.0
N2	C22	H221	H222	125.2	120.0
N2	C22	H221	H223	234.7	240.0
H221	C22	N2	C23	0.5	185.0
H222	C22	H221	H223	109.5	120.0
N2	C22	H222	H221	226.2	240.0
N2	C22	H222	H223	113.0	120.1
H222	C22	N2	C23	125.8	305.0
H221	C22	H222	H223	246.8	240.0
N2	C22	H223	H221	133.9	120.0
N2	C22	H223	H222	247.0	240.0
H223	C22	N2	C23	235.2	65.1
H221	C22	H223	H222	113.1	120.0
C11	N2	C23	C22	180.5	180.0
C23	N2	C22	H221	0.5	185.0
C23	N2	C22	H222	125.8	305.0
C23	N2	C22	H223	235.2	65.1
H231	C23	N2	H232	234.7	239.9
H231	C23	N2	H233	125.2	120.0
H232	C23	N2	H233	250.6	240.0
N2	C23	H231	H232	125.3	120.1
N2	C23	H231	H233	234.8	240.0
H232	C23	H231	H233	109.4	119.9
N2	C23	H232	H231	225.5	239.9
N2	C23	H232	H233	112.8	120.0
H231	C23	H232	H233	247.2	240.1
N2	C23	H233	H231	134.4	120.0
N2	C23	H233	H232	247.2	240.0
H231	C23	H233	H232	112.8	120.0
C17	N3	C24	C25	179.8	180.0
H241	C24	N3	H242	234.7	240.0
H241	C24	N3	H243	125.3	120.0
H242	C24	N3	H243	250.6	240.0
C24	N3	C25	H251	359.8	240.0
C24	N3	C25	H252	125.1	0.1
C24	N3	C25	H253	234.6	120.0
N3	C24	H241	H242	125.3	120.0
N3	C24	H241	H243	234.7	239.9
H241	C24	N3	C25	0.2	174.9
H242	C24	H241	H243	109.4	119.9
N3	C24	H242	H241	225.4	239.9
N3	C24	H242	H243	112.7	120.1
H242	C24	N3	C25	125.5	294.9
H241	C24	H242	H243	247.3	240.1
N3	C24	H243	H241	134.6	120.1
N3	C24	H243	H242	247.3	240.0
H243	C24	N3	C25	234.9	54.9
H241	C24	H243	H242	112.6	119.9
C17	N3	C25	C24	180.2	180.0
C25	N3	C24	H241	0.2	174.9
C25	N3	C24	H242	125.5	294.9
C25	N3	C24	H243	234.9	54.9
H251	C25	N3	H252	234.7	239.9
H251	C25	N3	H253	125.2	120.0
H252	C25	N3	H253	250.5	240.1
N3	C25	H251	H252	125.2	120.1
N3	C25	H251	H253	234.8	240.0
H252	C25	H251	H253	109.5	119.9
N3	C25	H252	H251	226.6	239.9
N3	C25	H252	H253	113.3	120.0
H251	C25	H252	H253	246.7	240.0
N3	C25	H253	H251	133.4	120.0
N3	C25	H253	H252	246.7	240.0
H251	C25	H253	H252	113.3	120.0