PDB Chemical Component CUB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CUB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C3Z |
C2Z |
1.362 |
|
C3Z |
C4Z |
1.605 |
|
C3Z |
H31 |
1.115 |
|
C3Z |
H32 |
1.115 |
|
C2Z |
C1Z |
1.396 |
|
C2Z |
H21 |
1.115 |
|
C2Z |
H22 |
1.115 |
|
C1Z |
NZ |
1.450 |
|
C1Z |
H11 |
1.115 |
|
C1Z |
H12 |
1.115 |
|
NZ |
CU |
1.818 |
|
NZ |
CZ |
1.318 |
|
MO |
S |
2.356 |
|
MO |
CZ |
2.590 |
|
MO |
OM2 |
1.986 |
|
MO |
OM1 |
1.660 |
|
S |
CZ |
1.712 |
|
CZ |
OM2 |
1.274 |
|
C4Z |
H41 |
1.115 |
|
C4Z |
H42 |
1.115 |
|
C4Z |
H43 |
1.115 |
|
Bond Angles for CUB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2Z |
C3Z |
C4Z |
118.9 |
|
C2Z |
C3Z |
H31 |
108.8 |
|
C2Z |
C3Z |
H32 |
108.8 |
|
C3Z |
C2Z |
C1Z |
119.3 |
|
C3Z |
C2Z |
H21 |
108.7 |
|
C3Z |
C2Z |
H22 |
108.7 |
|
C4Z |
C3Z |
H31 |
108.9 |
|
C4Z |
C3Z |
H32 |
108.8 |
|
C3Z |
C4Z |
H41 |
118.9 |
|
C3Z |
C4Z |
H42 |
108.8 |
|
C3Z |
C4Z |
H43 |
108.8 |
|
H31 |
C3Z |
H32 |
101.2 |
|
C1Z |
C2Z |
H21 |
108.6 |
|
C1Z |
C2Z |
H22 |
108.6 |
|
C2Z |
C1Z |
NZ |
110.2 |
|
C2Z |
C1Z |
H11 |
112.0 |
|
C2Z |
C1Z |
H12 |
112.0 |
|
H21 |
C2Z |
H22 |
101.4 |
|
NZ |
C1Z |
H11 |
111.9 |
|
NZ |
C1Z |
H12 |
111.9 |
|
C1Z |
NZ |
CU |
121.2 |
|
C1Z |
NZ |
CZ |
116.0 |
|
H11 |
C1Z |
H12 |
98.5 |
|
CU |
NZ |
CZ |
117.4 |
|
NZ |
CZ |
MO |
174.4 |
|
NZ |
CZ |
S |
120.9 |
|
NZ |
CZ |
OM2 |
128.1 |
|
S |
MO |
CZ |
40.1 |
|
S |
MO |
OM2 |
68.8 |
|
S |
MO |
OM1 |
113.1 |
|
MO |
S |
CZ |
77.3 |
|
CZ |
MO |
OM2 |
28.6 |
|
CZ |
MO |
OM1 |
113.1 |
|
MO |
CZ |
S |
62.5 |
|
MO |
CZ |
OM2 |
48.4 |
|
OM2 |
MO |
OM1 |
106.3 |
|
MO |
OM2 |
CZ |
103.0 |
|
S |
CZ |
OM2 |
110.9 |
|
H41 |
C4Z |
H42 |
108.8 |
|
H41 |
C4Z |
H43 |
108.8 |
|
H42 |
C4Z |
H43 |
101.3 |
|
Torsion Angles for CUB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4Z |
C3Z |
C2Z |
H31 |
234.7 |
|
C4Z |
C3Z |
C2Z |
H32 |
125.3 |
|
C2Z |
C3Z |
C4Z |
H41 |
180.0 |
|
C2Z |
C3Z |
C4Z |
H42 |
305.3 |
|
C2Z |
C3Z |
C4Z |
H43 |
54.8 |
|
H31 |
C3Z |
C2Z |
H32 |
250.6 |
|
C1Z |
C2Z |
C3Z |
H21 |
234.8 |
|
C1Z |
C2Z |
C3Z |
H22 |
125.2 |
|
C3Z |
C2Z |
C1Z |
NZ |
306.3 |
|
C3Z |
C2Z |
C1Z |
H11 |
71.5 |
|
C3Z |
C2Z |
C1Z |
H12 |
181.0 |
|
H21 |
C2Z |
C3Z |
H22 |
250.4 |
|
C2Z |
C3Z |
C4Z |
H31 |
125.2 |
|
C2Z |
C3Z |
C4Z |
H32 |
234.8 |
|
C4Z |
C3Z |
C2Z |
C1Z |
194.8 |
|
C4Z |
C3Z |
C2Z |
H21 |
320.1 |
|
C4Z |
C3Z |
C2Z |
H22 |
69.6 |
|
H31 |
C3Z |
C4Z |
H32 |
109.5 |
|
H41 |
C4Z |
C3Z |
H42 |
234.7 |
|
H41 |
C4Z |
C3Z |
H43 |
125.2 |
|
H42 |
C4Z |
C3Z |
H43 |
250.5 |
|
C2Z |
C3Z |
H31 |
C4Z |
229.0 |
|
C2Z |
C3Z |
H31 |
H32 |
114.5 |
|
H31 |
C3Z |
C2Z |
C1Z |
320.1 |
|
H31 |
C3Z |
C2Z |
H21 |
85.4 |
|
H31 |
C3Z |
C2Z |
H22 |
194.9 |
|
C4Z |
C3Z |
H31 |
H32 |
245.4 |
|
H31 |
C3Z |
C4Z |
H41 |
54.7 |
|
H31 |
C3Z |
C4Z |
H42 |
180.0 |
|
H31 |
C3Z |
C4Z |
H43 |
289.5 |
|
C2Z |
C3Z |
H32 |
C4Z |
131.0 |
|
C2Z |
C3Z |
H32 |
H31 |
245.6 |
|
H32 |
C3Z |
C2Z |
C1Z |
69.6 |
|
H32 |
C3Z |
C2Z |
H21 |
194.8 |
|
H32 |
C3Z |
C2Z |
H22 |
304.4 |
|
C4Z |
C3Z |
H32 |
H31 |
114.6 |
|
H32 |
C3Z |
C4Z |
H41 |
305.2 |
|
H32 |
C3Z |
C4Z |
H42 |
70.5 |
|
H32 |
C3Z |
C4Z |
H43 |
180.0 |
|
C1Z |
C2Z |
C3Z |
C4Z |
194.8 |
|
C1Z |
C2Z |
C3Z |
H31 |
320.1 |
|
C1Z |
C2Z |
C3Z |
H32 |
69.6 |
|
C3Z |
C2Z |
C1Z |
H21 |
125.3 |
|
C3Z |
C2Z |
C1Z |
H22 |
234.8 |
|
H21 |
C2Z |
C1Z |
H22 |
109.5 |
|
NZ |
C1Z |
C2Z |
H11 |
234.8 |
|
NZ |
C1Z |
C2Z |
H12 |
125.2 |
|
C2Z |
C1Z |
NZ |
CU |
135.4 |
|
C2Z |
C1Z |
NZ |
CZ |
288.8 |
|
H11 |
C1Z |
C2Z |
H12 |
250.5 |
|
H21 |
C2Z |
C3Z |
C4Z |
320.1 |
|
H21 |
C2Z |
C3Z |
H31 |
85.4 |
|
H21 |
C2Z |
C3Z |
H32 |
194.8 |
|
C3Z |
C2Z |
H21 |
C1Z |
228.8 |
|
C3Z |
C2Z |
H21 |
H22 |
114.4 |
|
C1Z |
C2Z |
H21 |
H22 |
245.7 |
|
H21 |
C2Z |
C1Z |
NZ |
181.0 |
|
H21 |
C2Z |
C1Z |
H11 |
306.2 |
|
H21 |
C2Z |
C1Z |
H12 |
55.8 |
|
H22 |
C2Z |
C3Z |
C4Z |
69.6 |
|
H22 |
C2Z |
C3Z |
H31 |
194.9 |
|
H22 |
C2Z |
C3Z |
H32 |
304.4 |
|
C3Z |
C2Z |
H22 |
C1Z |
131.2 |
|
C3Z |
C2Z |
H22 |
H21 |
245.5 |
|
C1Z |
C2Z |
H22 |
H21 |
114.3 |
|
H22 |
C2Z |
C1Z |
NZ |
71.5 |
|
H22 |
C2Z |
C1Z |
H11 |
196.7 |
|
H22 |
C2Z |
C1Z |
H12 |
306.3 |
|
NZ |
C1Z |
C2Z |
H21 |
181.0 |
|
NZ |
C1Z |
C2Z |
H22 |
71.5 |
|
C2Z |
C1Z |
NZ |
H11 |
125.3 |
|
C2Z |
C1Z |
NZ |
H12 |
234.7 |
|
H11 |
C1Z |
NZ |
H12 |
109.4 |
|
CU |
NZ |
C1Z |
CZ |
206.6 |
|
C1Z |
NZ |
CZ |
MO |
50.3 |
|
C1Z |
NZ |
CZ |
S |
176.0 |
|
C1Z |
NZ |
CZ |
OM2 |
1.7 |
|
H11 |
C1Z |
C2Z |
H21 |
306.2 |
|
H11 |
C1Z |
C2Z |
H22 |
196.7 |
|
C2Z |
C1Z |
H11 |
NZ |
235.7 |
|
C2Z |
C1Z |
H11 |
H12 |
117.9 |
|
NZ |
C1Z |
H11 |
H12 |
242.2 |
|
H11 |
C1Z |
NZ |
CU |
10.1 |
|
H11 |
C1Z |
NZ |
CZ |
163.5 |
|
H12 |
C1Z |
C2Z |
H21 |
55.8 |
|
H12 |
C1Z |
C2Z |
H22 |
306.3 |
|
C2Z |
C1Z |
H12 |
NZ |
124.3 |
|
C2Z |
C1Z |
H12 |
H11 |
242.1 |
|
NZ |
C1Z |
H12 |
H11 |
117.8 |
|
H12 |
C1Z |
NZ |
CU |
260.7 |
|
H12 |
C1Z |
NZ |
CZ |
54.0 |
|
CU |
NZ |
C1Z |
H11 |
10.1 |
|
CU |
NZ |
C1Z |
H12 |
260.7 |
|
C1Z |
NZ |
CU |
CZ |
153.0 |
|
CU |
NZ |
CZ |
MO |
204.8 |
|
CU |
NZ |
CZ |
S |
330.5 |
|
CU |
NZ |
CZ |
OM2 |
156.1 |
|
CZ |
NZ |
C1Z |
H11 |
163.5 |
|
CZ |
NZ |
C1Z |
H12 |
54.0 |
|
C1Z |
NZ |
CZ |
CU |
205.5 |
|
S |
MO |
CZ |
NZ |
128.3 |
|
MO |
S |
CZ |
NZ |
185.2 |
|
NZ |
CZ |
MO |
OM2 |
307.7 |
|
NZ |
CZ |
MO |
OM1 |
29.3 |
|
MO |
CZ |
NZ |
S |
234.3 |
|
MO |
CZ |
NZ |
OM2 |
48.6 |
|
MO |
OM2 |
CZ |
NZ |
174.3 |
|
S |
CZ |
NZ |
OM2 |
174.4 |
|
NZ |
CZ |
MO |
S |
128.3 |
|
NZ |
CZ |
S |
MO |
185.2 |
|
CZ |
MO |
S |
OM2 |
0.3 |
|
CZ |
MO |
S |
OM1 |
261.0 |
|
S |
MO |
CZ |
S |
360.0 |
|
S |
MO |
CZ |
OM2 |
180.5 |
|
OM2 |
MO |
S |
OM1 |
260.7 |
|
S |
MO |
OM2 |
CZ |
0.4 |
|
MO |
S |
CZ |
OM2 |
0.4 |
|
S |
MO |
CZ |
OM1 |
98.9 |
|
CZ |
MO |
S |
CZ |
-0.0 |
|
OM2 |
MO |
CZ |
OM1 |
278.4 |
|
CZ |
MO |
OM2 |
CZ |
-0.0 |
|
S |
CZ |
MO |
OM2 |
179.5 |
|
NZ |
CZ |
OM2 |
MO |
174.3 |
|
S |
MO |
OM2 |
OM1 |
109.0 |
|
OM2 |
MO |
S |
CZ |
359.7 |
|
CZ |
MO |
OM2 |
OM1 |
108.6 |
|
OM2 |
MO |
CZ |
S |
179.5 |
|
OM2 |
MO |
CZ |
OM2 |
360.0 |
|
S |
CZ |
OM2 |
MO |
359.5 |
|
S |
MO |
OM1 |
CZ |
316.2 |
|
S |
MO |
OM1 |
OM2 |
286.6 |
|
OM1 |
MO |
S |
CZ |
99.0 |
|
CZ |
MO |
OM1 |
OM2 |
330.4 |
|
OM1 |
MO |
CZ |
S |
261.1 |
|
OM1 |
MO |
CZ |
OM2 |
81.6 |
|
OM1 |
MO |
OM2 |
CZ |
251.4 |
|
NZ |
CZ |
S |
OM2 |
184.7 |
|
CZ |
S |
MO |
CZ |
360.0 |
|
CZ |
S |
MO |
OM2 |
359.7 |
|
CZ |
S |
MO |
OM1 |
99.0 |
|
S |
CZ |
MO |
OM1 |
261.1 |
|
MO |
CZ |
S |
OM2 |
359.6 |
|
MO |
OM2 |
CZ |
S |
359.5 |
|
NZ |
CZ |
OM2 |
S |
174.8 |
|
OM2 |
CZ |
MO |
OM2 |
360.0 |
|
OM2 |
CZ |
MO |
OM1 |
81.6 |
|
MO |
CZ |
OM2 |
S |
0.5 |
|
CZ |
OM2 |
MO |
OM1 |
251.4 |
|
H41 |
C4Z |
C3Z |
H31 |
54.7 |
|
H41 |
C4Z |
C3Z |
H32 |
305.2 |
|
C3Z |
C4Z |
H41 |
H42 |
125.3 |
|
C3Z |
C4Z |
H41 |
H43 |
234.8 |
|
H42 |
C4Z |
H41 |
H43 |
109.5 |
|
H42 |
C4Z |
C3Z |
H31 |
180.0 |
|
H42 |
C4Z |
C3Z |
H32 |
70.5 |
|
C3Z |
C4Z |
H42 |
H41 |
229.0 |
|
C3Z |
C4Z |
H42 |
H43 |
114.5 |
|
H41 |
C4Z |
H42 |
H43 |
245.4 |
|
H43 |
C4Z |
C3Z |
H31 |
289.5 |
|
H43 |
C4Z |
C3Z |
H32 |
180.0 |
|
C3Z |
C4Z |
H43 |
H41 |
130.9 |
|
C3Z |
C4Z |
H43 |
H42 |
245.5 |
|
H41 |
C4Z |
H43 |
H42 |
114.6 |
|