Atom Nomenclature for CU4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CU4

Atom Name (V3) Atom Name (V2)
C01 C1
C05 C2
C06 C3
C07 C4
C08 C5
C09 C6
C10 C7
C11 C8
C14 C9
C15 C10
C16 C11
C19 C12
C20 C13
C21 C14
C22 C15
C23 C16
C25 C17
C26 C18
C27 C19
C28 C20
C29 C21
C30 C22
C31 C23
C32 C24
F24 F1
N12 N1
N13 N2
N18 N3
N33 N4
O03 O1
O04 O2
O17 O3
S02 S1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17