PDB Chemical Component CTO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CTO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O31 C31 1.450 1.429
O71 C71 1.176 1.212
C81 C71 1.521 1.508
C71 N21 1.496 1.348
C31 C41 1.512 1.532
C31 C21 1.485 1.532
O41 C41 1.423 1.430
C41 C51 1.532 1.532
N21 C21 1.503 1.465
C21 C11 1.532 1.532
O61 C61 1.412 1.429
C51 C61 1.501 1.530
C51 O51 1.475 1.429
C11 O51 1.507 1.428
C11 O42 1.364 1.428
O42 C42 1.464 1.428
O32 C32 1.459 1.429
C42 C32 1.494 1.532
C42 C52 1.522 1.531
C32 C22 1.496 1.532
C62 C52 1.501 1.530
C62 O62 1.427 1.429
C52 O52 1.479 1.429
N22 C22 1.485 1.465
N22 C72 1.481 1.348
C22 C12 1.516 1.531
O52 C12 1.498 1.429
C12 O43 1.397 1.428
C82 C72 1.522 1.507
C72 O72 1.184 1.213
O63 C63 1.426 1.430
O43 C43 1.473 1.429
C63 C53 1.501 1.530
C43 C53 1.534 1.531
C43 C33 1.503 1.531
O33 C33 1.450 1.428
C53 O53 1.464 1.430
C33 C23 1.490 1.532
O53 C13 1.492 1.429
C23 C13 1.520 1.531
C23 N23 1.494 1.465
C13 O13 1.368 1.429
O73 C73 1.205 1.213
N23 C73 1.475 1.347
C73 C83 1.541 1.507
C11 H11 1.100 1.090
C21 H21 1.100 1.090
N21 HNL 1.000 0.970
C81 H812 1.100 1.090
C81 H813 1.100 1.090
C81 H811 1.100 1.090
C31 H31 1.100 1.090
O31 HOV 0.950 0.968
C41 H41 1.100 1.089
O41 HO4 0.950 0.967
C51 H51 1.100 1.090
C61 H611 1.100 1.090
C61 H612 1.100 1.089
O61 HO6 0.950 0.968
C12 H12 1.100 1.091
C22 H22 1.100 1.090
N22 HNM 1.000 0.970
C82 H823 1.100 1.091
C82 H821 1.100 1.090
C82 H822 1.100 1.089
C32 H32 1.100 1.090
O32 HOW 0.950 0.967
C42 H42 1.100 1.090
C52 H52 1.100 1.090
C62 H621 1.100 1.090
C62 H622 1.100 1.091
O62 HO2 0.951 0.967
C13 H13 1.100 1.091
O13 HOD 0.950 0.967
C23 H23 1.100 1.090
N23 HNN 1.000 0.970
C83 H831 1.100 1.090
C83 H832 1.100 1.089
C83 H833 1.100 1.091
C33 H33 1.100 1.090
O33 HOX 0.950 0.967
C43 H43 1.100 1.090
C53 H53 1.100 1.090
C63 H631 1.100 1.090
C63 H632 1.100 1.090
O63 HO3 0.950 0.967

Bond Angles for CTO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O31 C31 H31 109.2 109.6
C81 C71 N21 120.3 120.0
C71 N21 HNL 120.0 120.0
C31 C41 C51 112.5 109.1
C41 C31 H31 108.3 109.6
C31 C41 H41 108.9 109.6
C31 C21 H21 109.3 109.5
O41 C41 H41 110.1 109.6
C41 C51 C61 109.5 109.5
C41 C51 O51 111.7 109.4
C51 C41 H41 108.6 109.5
C41 C51 H51 108.2 109.5
N21 C21 H21 109.0 109.6
C21 C11 O51 110.9 109.4
C21 C11 H11 107.8 109.5
O61 C61 H611 109.2 109.5
O61 C61 H612 109.3 109.5
C61 C51 O51 109.7 109.5
C61 C51 H51 108.6 109.5
C51 C61 H611 109.2 109.5
C51 C61 H612 109.3 109.5
C11 O51 C51 111.0 114.2
O51 C51 H51 109.0 109.5
O51 C11 H11 108.1 109.5
O42 C42 H42 109.3 109.6
O32 C32 H32 109.5 109.5
C42 C32 H32 109.0 109.5
C42 C52 O52 110.4 109.4
C52 C42 H42 108.5 109.5
C42 C52 H52 108.9 109.5
C32 C22 H22 108.8 109.5
C62 C52 O52 108.9 109.5
C62 C52 H52 109.1 109.4
O62 C62 H621 109.4 109.5
O62 C62 H622 109.4 109.5
C62 O62 HO2 109.5 114.0
O52 C52 H52 109.5 109.5
N22 C22 H22 109.0 109.5
N22 C72 O72 120.2 120.0
C22 C12 H12 108.5 109.5
O52 C12 H12 108.7 109.4
C82 C72 O72 120.4 120.0
O63 C63 H631 109.6 109.5
O63 C63 H632 109.5 109.4
O43 C43 H43 109.9 109.5
C63 C53 O53 108.4 109.5
C63 C53 H53 108.7 109.6
C43 C53 O53 111.8 109.4
C53 C43 H43 109.0 109.5
C43 C53 H53 108.2 109.5
C43 C33 H33 108.2 109.6
O33 C33 H33 108.9 109.5
O53 C53 H53 109.1 109.4
C33 C23 N23 109.4 109.5
C33 C23 H23 109.9 109.5
O53 C13 H13 108.4 109.5
C23 C13 O13 111.5 109.5
C23 C13 H13 108.1 109.5
C23 N23 C73 121.2 120.0
N23 C23 H23 109.8 109.6
C23 N23 HNN 119.4 120.0
O13 C13 H13 110.1 109.5
C13 O13 HOD 109.5 114.0
C73 C83 H831 109.5 109.5
C73 C83 H832 109.5 109.5
C73 C83 H833 109.5 109.5
H812 C81 H813 109.5 109.5
H811 C81 H812 109.5 109.5
H811 C81 H813 109.4 109.5
H611 C61 H612 109.5 109.5
H821 C82 H823 109.5 109.5
H822 C82 H823 109.5 109.5
H821 C82 H822 109.5 109.5
H621 C62 H622 109.4 109.5
H831 C83 H832 109.5 109.5
H831 C83 H833 109.4 109.4
H832 C83 H833 109.5 109.4
H631 C63 H632 109.5 109.5

Torsion Angles for CTO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C41 C31 O31 H31 118.1 120.3
O31 C31 C41 H41 50.1 56.9
O31 C31 C21 H21 308.0 303.0
O71 C71 N21 HNL 180.0 180.0
C81 C71 N21 HNL 0.0 0.0
C71 N21 C21 H21 343.0 324.9
O31 C31 C41 H31 241.4 239.7
C41 C31 C21 H21 69.0 62.9
O41 C41 C31 H41 240.3 239.7
C31 C41 C51 C61 186.3 182.4
C31 C41 C51 O51 308.1 302.4
C51 C41 C31 H41 120.4 119.9
C31 C41 C51 H51 68.1 62.3
N21 C21 C31 H21 119.0 120.2
C31 C21 C11 O51 55.2 57.6
C31 C21 C11 H11 297.0 297.6
O41 C41 C31 H31 49.0 57.0
C31 C41 O41 H41 119.0 120.2
O41 C41 C51 O51 188.2 182.5
C51 C41 O41 H41 241.4 239.9
O41 C41 C51 H51 308.2 302.5
C51 C41 C31 H31 289.1 297.1
C31 C41 C51 H41 239.5 240.0
O41 C41 C51 H41 119.6 120.2
C61 C51 C41 O51 238.2 240.0
C61 C51 C41 H51 118.2 120.1
C41 C51 C61 H611 301.5 305.0
C41 C51 C61 H612 181.8 65.0
C11 O51 C51 C41 56.2 61.2
O51 C51 C41 H51 240.0 240.0
C31 C21 N21 H21 240.9 239.8
N21 C21 C11 O51 175.8 177.5
N21 C21 C11 H11 57.6 57.6
C21 C11 O51 C51 302.1 298.8
O51 C11 C21 H11 118.2 120.0
O61 C61 C51 H51 179.6 305.0
C51 C61 O61 H611 239.9 120.0
C51 C61 O61 H612 120.2 240.0
H611 C61 O61 H612 240.3 120.0
C41 C51 C61 O51 123.0 119.9
C61 C51 C41 H41 306.8 302.4
C41 C51 C61 H51 242.0 240.0
O61 C61 C51 H611 120.1 240.0
O61 C61 C51 H612 239.8 120.0
C11 O51 C51 C61 177.8 181.2
O51 C51 C61 H51 119.0 120.1
H611 C61 C51 H612 119.7 240.0
C41 C51 O51 C61 238.3 240.0
O51 C51 C41 H41 68.6 62.3
C41 C51 O51 H51 119.5 119.9
C61 C51 O51 H51 241.2 239.9
O51 C51 C61 H611 178.5 185.1
O51 C51 C61 H612 58.8 305.1
C51 O51 C11 H11 60.1 58.8
C41 C51 O51 C11 56.2 61.2
C21 C11 O51 H11 242.0 240.0
C61 C51 O51 C11 177.8 181.2
C11 O51 C51 H51 296.6 301.3
C11 O42 C42 H42 356.3 17.4
O42 C42 C32 H32 57.7 57.0
O42 C42 C52 O52 178.5 182.4
C52 C42 O42 H42 240.8 239.9
O42 C42 C52 H52 298.6 302.5
C42 C32 O32 H32 119.5 120.2
O32 C32 C22 H22 309.3 303.0
O32 C32 C42 H32 240.2 239.8
C42 C32 C22 H22 69.8 62.9
O42 C42 C52 H42 119.6 120.2
C52 C42 C32 H32 296.2 297.1
C62 C52 C42 O52 239.7 240.0
C62 C52 C42 H52 119.6 120.0
O52 C52 C42 H52 239.8 240.0
N22 C22 C32 H22 118.5 120.2
C32 C22 C12 H12 288.0 297.7
C42 C52 C62 O52 121.1 119.9
C62 C52 C42 H42 298.6 302.3
C42 C52 C62 H52 240.6 240.0
O52 C52 C62 H52 119.5 120.0
O62 C62 C52 O52 305.2 64.0
O62 C62 C52 H52 185.7 304.0
H621 C62 O62 H622 119.9 120.0
O52 C52 C42 H42 58.8 62.3
C42 C52 O52 H52 119.8 120.0
C62 C52 O52 H52 240.7 240.0
C52 O52 C12 H12 68.5 58.8
C32 C22 N22 H22 241.6 239.8
N22 C22 C12 H12 48.8 57.6
C72 N22 C22 H22 345.9 324.8
C82 C72 N22 O72 179.9 179.9
O52 C12 C22 H12 120.2 119.9
C22 C12 O52 H12 240.0 240.1
C12 O43 C43 H43 357.4 15.8
N22 C72 C82 O72 180.1 180.1
O63 C63 C53 H53 188.9 304.1
H631 C63 O63 H632 239.9 120.0
O43 C43 C53 O53 188.7 182.5
C53 C43 O43 H43 241.4 239.9
O43 C43 C53 H53 308.9 302.4
O43 C43 C33 H33 45.1 57.1
C43 C53 C63 O53 122.9 119.9
C63 C53 C43 H43 308.6 302.4
C43 C53 C63 H53 241.4 239.9
O53 C53 C63 H53 118.5 120.0
O43 C43 C53 H43 119.2 120.1
C63 C53 C43 O53 239.1 240.0
C63 C53 C43 H53 118.9 120.1
C53 C43 C33 H33 286.3 297.2
O53 C53 C43 H53 239.8 240.1
O33 C33 C43 H33 241.3 239.8
C43 C33 C23 N23 192.3 183.1
C43 C33 C23 H23 71.7 62.9
C43 C33 O33 H33 118.3 120.2
O33 C33 C23 H23 309.7 302.9
C63 C53 O53 H53 241.8 239.9
O53 C53 C43 H43 69.5 62.4
C43 C53 O53 H53 119.7 119.9
C53 O53 C13 H13 54.1 58.8
C33 C23 C13 O13 179.8 177.5
C33 C23 C13 H13 300.9 297.6
C33 C23 N23 C73 232.6 204.7
N23 C23 C33 H23 120.7 120.2
C33 C23 N23 HNN 52.6 24.7
C23 C13 O53 H13 242.3 240.0
O13 C13 O53 H13 119.9 120.0
O53 C13 O13 HOD 180.0 300.0
O53 C13 C23 H13 117.9 120.0
O13 C13 C23 H13 238.9 240.0
C23 C13 O13 HOD 58.8 180.0
C33 C23 N23 H23 239.3 239.8
N23 C23 C13 O13 299.2 297.5
N23 C23 C13 H13 60.3 57.5
O53 C13 O13 H13 241.2 240.0
C23 C13 O13 H13 119.9 120.0
O73 C73 C83 H831 360.0 179.9
O73 C73 C83 H832 120.0 300.0
O73 C73 C83 H833 240.0 60.0
C73 N23 C23 H23 353.3 324.9
C23 N23 C73 HNN 180.0 180.0
N23 C73 C83 H831 180.3 360.0
N23 C73 C83 H832 300.4 120.0
N23 C73 C83 H833 60.4 240.0
C23 N23 C73 C83 180.8 180.0
H831 C83 C73 H832 240.0 240.0
H831 C83 C73 H833 120.0 120.0
H832 C83 C73 H833 240.0 240.0
C21 C11 H11 O51 120.0 119.9
H11 C11 O51 C51 60.1 58.8
H21 C21 C11 O51 294.7 297.7
H21 C21 C11 H11 176.4 177.7
HNL N21 C21 H21 163.0 144.8
H812 C81 C71 N21 180.0 90.0
H811 C81 H812 H813 240.0 239.9
H813 C81 C71 N21 300.0 210.0
H811 C81 H813 H812 120.0 120.1
H811 C81 C71 N21 59.9 330.0
H812 C81 H811 H813 120.0 120.1
H31 C31 C41 C51 289.1 297.1
H31 C31 C41 H41 168.7 177.2
H31 C31 C21 H21 189.2 182.8
HOV O31 C31 H31 62.0 299.7
C31 C41 H41 C51 122.7 119.7
H41 C41 C31 H31 168.7 177.2
H41 C41 C51 C61 306.8 302.4
H41 C41 C51 O51 68.6 62.3
H41 C41 C51 H51 188.6 182.3
HO4 O41 C41 H41 61.0 59.8
C41 C51 H51 C61 118.8 120.0
C41 C51 H51 O51 238.3 240.1
H51 C51 C41 H41 188.6 182.3
C61 C51 H51 O51 119.5 120.1
H51 C51 C61 H611 59.5 65.0
H51 C51 C61 H612 299.7 185.0
O61 C61 H611 H612 119.6 239.9
H611 C61 C51 O51 178.5 185.1
H611 C61 C51 H51 59.5 65.0
C51 C61 H611 H612 240.4 120.0
O61 C61 H612 H611 240.4 120.0
H612 C61 C51 O51 58.8 305.1
H612 C61 C51 H51 299.7 185.0
C51 C61 H612 H611 119.6 240.0
HO6 O61 C61 H611 300.2 60.0
HO6 O61 C61 H612 59.9 300.0
H22 C22 C12 H12 167.0 177.7
HNM N22 C22 H22 165.9 144.9
HNM N22 C72 O72 180.3 180.0
H823 C82 C72 O72 360.0 180.0
H821 C82 H823 H822 120.0 120.0
H821 C82 C72 O72 120.0 300.0
H822 C82 H821 H823 120.0 120.0
H822 C82 C72 O72 240.0 60.0
H821 C82 H822 H823 240.0 240.0
H32 C32 C22 H22 190.1 182.8
HOW O32 C32 H32 60.5 60.2
H42 C42 C32 H32 177.4 177.2
H42 C42 C52 O52 58.8 62.3
H42 C42 C52 H52 179.0 182.3
C42 C52 H52 O52 239.3 240.0
H52 C52 C42 H42 179.0 182.3
C62 C52 H52 O52 119.1 120.0
H621 C62 C52 O52 65.2 184.0
H621 C62 C52 H52 305.7 64.0
O62 C62 H621 H622 240.1 240.0
H621 C62 O62 HO2 60.0 60.0
H622 C62 C52 O52 185.1 304.0
H622 C62 C52 H52 65.6 184.0
O62 C62 H622 H621 119.9 120.0
H622 C62 O62 HO2 300.1 300.0
HO2 O62 C62 H621 60.0 60.0
HO2 O62 C62 H622 300.1 300.0
C23 C13 H13 O13 238.0 240.0
H13 C13 O13 HOD 298.8 60.0
HOD O13 C13 H13 298.8 60.0
C33 C23 H23 N23 120.4 120.2
H23 C23 C13 O13 57.9 57.7
H23 C23 C13 H13 179.1 177.7
H23 C23 N23 C73 353.3 324.9
H23 C23 N23 HNN 173.3 144.9
C23 N23 HNN C73 180.0 180.0
HNN N23 C23 H23 173.3 144.9
C73 C83 H831 H832 120.0 120.0
C73 C83 H831 H833 240.0 240.0
H832 C83 H831 H833 120.0 119.9
C73 C83 H832 H831 240.0 240.0
C73 C83 H832 H833 120.0 120.0
H831 C83 H832 H833 240.1 240.1
C73 C83 H833 H831 120.0 120.0
C73 C83 H833 H832 240.0 240.0
H831 C83 H833 H832 120.0 120.0
H33 C33 C23 N23 312.1 303.0
H33 C33 C23 H23 191.4 182.8
HOX O33 C33 H33 61.7 60.2
H43 C43 C53 O53 69.5 62.4
H43 C43 C53 H53 189.8 182.3
H43 C43 C33 H33 164.9 177.2
C63 C53 H53 O53 118.1 120.1
C43 C53 H53 O53 238.1 240.2
H53 C53 C43 H43 189.8 182.3
O63 C63 H631 H632 120.1 240.0
H631 C63 C53 O53 187.4 184.2
H631 C63 C53 H53 68.9 64.1
O63 C63 H632 H631 239.8 120.0
H632 C63 C53 O53 67.4 304.2
H632 C63 C53 H53 308.8 184.2
HO3 O63 C63 H631 299.9 60.0
HO3 O63 C63 H632 60.0 299.9