PDB Chemical Component CTG

Ideal Model

Chemical Description

Name (5R,6S)-5,6-DIHYDRO-5,6-DIHYDROXYTHYMIDINE-5'-MONOPHOSPHATE
Formula C10 H17 N2 O10 P
Formal charge 0
Molecular weight 356.223 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 40
Chiral atom count 5
Chiral atoms C4' C1' C6 C5 C3'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5,6-dihydroxythymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[(5R,6S)-5,6-dihydroxy-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@]1(O)[C@H](O)N([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) C[C]1(O)[CH](O)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C[C@]1([C@@H](N(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C10H17N2O10P/c1-10(17)7(14)11-9(16)12(8(10)15)6-2-4(13)5(22-6)3-21-23(18,19)20/h4-6,8,13,15,17H,2-3H2,1H3,(H,11,14,16)(H2,18,19,20)/t4-,5+,6+,8-,10-/m0/s1
InChIKey descriptor QWAYKDYQHLTLIL-LFOMBHIWSA-N

Status Information

Last modified 2011-06-04
Created 2006-09-13
Release status REL
Processing site PDBJ