PDB Chemical Component CTG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CTG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O5' 1.592 1.619
P OP1 1.485 1.501
P OP3   1.618
P OP2 1.491 1.616
OP2 HOP2 0.950 0.981
O5' C5' 1.427 1.418
C5' C4' 1.511 1.523
C5' H5' 1.100 1.092
C5' H5'' 1.100 1.093
C4' C3' 1.521 1.522
C4' O4' 1.456 1.441
C4' H4' 1.100 1.094
O4' C1' 1.415 1.434
C1' N1 1.479 1.434
C1' C2' 1.530 1.520
C1' H1' 1.100 1.095
N1 C2 1.376 1.400
N1 C6 1.455 1.460
C6 C5 1.543 1.529
C6 O6 1.435 1.428
C6 H6 1.100 1.097
O6 HO6 0.950 0.969
C2 N3 1.369 1.402
C2 O2 1.222 1.233
N3 C4 1.380 1.394
N3 H3 1.000 1.016
C4 C5 1.540 1.521
C4 O4 1.228 1.229
C5 C5M 1.523 1.532
C5 O5 1.434 1.421
C5M H71 1.100 1.094
C5M H72 1.100 1.095
C5M H73 1.100 1.094
O5 HO5 0.950 0.971
C2' C3' 1.528 1.511
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.095
C3' O3' 1.423 1.426
C3' H3' 1.100 1.094
O3' HO3' 0.950 0.974
OP3 HOP3   0.981

Bond Angles for CTG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' 107.0 115.0
O5' P OP3   103.7
OP2 P O5' 109.2 102.9
P O5' C5' 119.6 118.5
OP1 P OP3   115.3
OP1 P OP2 119.8 115.0
OP2 P OP3   103.3
P OP3 HOP3   118.9
P OP2 HOP2 109.5 118.9
O5' C5' C4' 111.3 108.9
O5' C5' H5' 108.9 109.0
O5' C5' H5'' 108.5 108.9
C4' C5' H5' 108.9 110.3
C4' C5' H5'' 108.5 110.3
C5' C4' C3' 112.4 112.9
C5' C4' O4' 109.8 107.9
C5' C4' H4' 106.2 109.5
H5' C5' H5'' 110.9 109.3
O4' C4' C3' 106.0 106.2
C3' C4' H4' 110.0 112.2
C4' C3' C2' 106.3 103.1
C4' C3' O3' 115.9 109.9
C4' C3' H3' 112.4 113.5
O4' C4' H4' 112.5 107.9
C4' O4' C1' 110.6 109.3
O4' C1' N1 109.4 109.3
O4' C1' C2' 109.4 107.4
O4' C1' H1' 111.7 108.0
N1 C1' C2' 115.1 112.8
N1 C1' H1' 105.5 107.8
C1' N1 C2 115.1 120.9
C1' N1 C6 118.0 117.4
C2' C1' H1' 105.6 111.5
C1' C2' C3' 102.7 102.5
C1' C2' H2' 111.8 110.6
C1' C2' H2'' 113.2 111.7
C6 N1 C2 121.0 121.1
N1 C2 N3 114.4 114.8
N1 C2 O2 123.1 124.3
N1 C6 C5 109.2 111.5
N1 C6 O6 112.3 108.4
N1 C6 H6 107.7 109.1
O6 C6 C5 109.3 110.5
C5 C6 H6 110.8 110.1
C6 C5 C4 107.0 109.9
C6 C5 C5M 110.3 111.7
C6 C5 O5 109.6 108.9
O6 C6 H6 107.6 107.0
C6 O6 HO6 109.5 106.4
O2 C2 N3 122.4 121.0
C2 N3 C4 126.7 128.0
C2 N3 H3 116.7 115.9
C4 N3 H3 116.6 116.0
N3 C4 C5 115.0 113.9
N3 C4 O4 120.5 123.2
O4 C4 C5 124.6 122.9
C4 C5 C5M 110.4 109.1
C4 C5 O5 110.0 108.9
C5M C5 O5 109.4 108.4
C5 C5M H71 109.5 110.6
C5 C5M H72 109.5 110.5
C5 C5M H73 109.5 110.5
C5 O5 HO5 109.5 106.8
H71 C5M H72 109.5 108.3
H71 C5M H73 109.4 108.4
H72 C5M H73 109.5 108.3
C3' C2' H2' 111.8 109.7
C3' C2' H2'' 113.2 114.1
C2' C3' O3' 120.4 109.7
C2' C3' H3' 106.6 113.2
H2' C2' H2'' 104.4 108.3
O3' C3' H3' 94.3 107.4
C3' O3' HO3' 109.5 107.2

Torsion Angles for CTG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' OP3   126.8
OP1 P O5' OP2 228.9 234.2
OP2 P O5' OP3   252.6
O5' P OP3 HOP3   175.4
O5' P OP2 HOP2 106.7 186.2
P O5' C5' C4' 178.2 180.0
P O5' C5' H5' 298.1 300.4
P O5' C5' H5'' 58.9 59.6
O5' P OP1 OP3   239.4
OP2 P OP1 O5' 235.2 240.7
OP1 P O5' C5' 68.1 179.9
OP2 P OP1 OP3   120.1
OP1 P OP3 HOP3   48.8
OP1 P OP2 HOP2 230.5 312.0
OP1 P OP3 O5'   233.4
OP2 P OP3 O5'   107.1
OP3 P O5' C5'   53.2
OP1 P OP3 OP2   126.3
OP3 P OP2 HOP2   78.5
OP1 P OP2 O5' 123.8 125.8
O5' P OP2 OP3   107.7
OP2 P O5' C5' 199.2 305.8
OP1 P OP2 OP3   233.5
OP2 P OP3 HOP3   282.5
HOP2 OP2 P O5' 106.7 186.2
HOP2 OP2 P OP3   78.5
C5' O5' P OP3   53.2
C4' C5' O5' H5' 240.0 239.6
C4' C5' O5' H5'' 119.2 120.4
O5' C5' C4' C3' 30.6 179.5
O5' C5' C4' O4' 272.8 62.4
O5' C5' C4' H4' 150.9 305.3
H5' C5' O5' H5'' 239.2 240.8
O5' C5' C4' H5' 120.0 119.6
O5' C5' C4' H5'' 240.8 240.5
H5' C5' C4' H5'' 120.8 120.9
O4' C4' C5' C3' 242.2 242.9
C3' C4' C5' H4' 239.7 234.2
C5' C4' C3' C2' 259.8 271.2
C5' C4' C3' O3' 123.0 154.2
C5' C4' C3' H3' 16.1 34.0
O4' C4' C5' H4' 121.9 117.1
C5' C4' O4' C1' 112.5 108.6
O5' C5' H5' C4' 238.5 240.5
O5' C5' H5' H5'' 119.3 119.0
C4' C5' H5' H5'' 240.8 238.5
H5' C5' C4' C3' 270.6 60.0
H5' C5' C4' O4' 152.8 302.9
H5' C5' C4' H4' 30.9 185.7
O5' C5' H5'' C4' 121.0 119.4
O5' C5' H5'' H5' 240.5 241.0
C4' C5' H5'' H5' 119.5 121.5
H5'' C5' C4' C3' 149.8 299.0
H5'' C5' C4' O4' 32.1 181.9
H5'' C5' C4' H4' 270.1 64.8
C3' C4' C5' H5' 270.6 60.0
C3' C4' C5' H5'' 149.8 299.0
C5' C4' C3' O4' 240.0 241.9
C5' C4' C3' H4' 118.1 124.3
O4' C4' C3' H4' 238.1 242.4
C3' C4' O4' C1' 350.9 347.3
C1' C2' C3' C4' 337.9 326.6
C4' C3' C2' H2' 217.9 84.1
C4' C3' C2' H2'' 100.4 205.7
C2' C3' C4' O3' 136.8 116.9
C2' C3' C4' H3' 243.7 237.2
O3' C3' C4' H3' 106.9 120.2
C4' C3' O3' HO3' 166.9 132.5
O4' C4' C5' H5' 152.8 302.9
O4' C4' C5' H5'' 32.1 181.9
C5' C4' O4' C3' 121.6 121.4
C5' C4' O4' H4' 241.9 241.8
C3' C4' O4' H4' 120.3 120.5
O4' C4' C3' C2' 19.8 29.2
O4' C4' C3' O3' 243.0 272.3
O4' C4' C3' H3' 136.1 152.1
C4' O4' C1' N1 227.8 228.3
C4' O4' C1' C2' 354.7 351.0
C4' O4' C1' H1' 111.3 111.3
H4' C4' C5' H5' 30.9 185.7
H4' C4' C5' H5'' 270.1 64.8
C5' C4' H4' C3' 238.2 233.8
C5' C4' H4' O4' 120.2 117.1
O4' C4' H4' C3' 118.0 116.7
H4' C4' C3' C2' 141.7 146.9
H4' C4' C3' O3' 4.9 29.9
H4' C4' C3' H3' 258.0 269.7
H4' C4' O4' C1' 230.6 226.8
C1' O4' C4' C3' 350.9 347.3
C1' O4' C4' H4' 230.6 226.8
N1 C1' O4' C2' 233.0 237.3
N1 C1' O4' H1' 116.5 117.0
O4' C1' N1 C2 232.0 182.9
O4' C1' N1 C6 78.7 11.3
C2' C1' O4' H1' 243.5 239.7
O4' C1' C2' C3' 17.1 26.9
O4' C1' C2' H2' 137.1 270.0
O4' C1' C2' H2'' 254.7 149.4
O4' C1' N1 C2' 123.7 119.4
O4' C1' N1 H1' 239.7 242.9
C2' C1' N1 H1' 116.0 123.5
N1 C1' C2' C3' 140.8 147.4
N1 C1' C2' H2' 260.8 30.6
N1 C1' C2' H2'' 18.4 269.9
C6 N1 C1' C2 206.7 188.4
C1' N1 C2 N3 202.0 180.1
C1' N1 C2 O2 22.0 0.2
C1' N1 C6 C5 196.9 211.2
C1' N1 C6 O6 75.6 89.3
C1' N1 C6 H6 317.3 333.1
C4' C3' C2' C1' 337.9 326.6
O4' C1' C2' N1 236.3 239.5
O4' C1' C2' H1' 120.3 118.1
N1 C1' C2' H1' 244.0 238.6
C2' C1' N1 C2 108.4 63.5
C2' C1' N1 C6 315.1 251.9
C3' C2' C1' H2' 240.0 116.9
C3' C2' C1' H2'' 122.4 237.5
C1' C2' C3' O3' 112.4 83.6
C1' C2' C3' H3' 217.9 203.6
H2' C2' C1' H2'' 242.4 120.7
O4' C1' H1' N1 118.8 118.0
O4' C1' H1' C2' 241.2 242.3
N1 C1' H1' C2' 122.3 124.3
H1' C1' N1 C2 352.3 300.0
H1' C1' N1 C6 199.0 128.4
H1' C1' C2' C3' 256.8 268.8
H1' C1' C2' H2' 16.8 151.9
H1' C1' C2' H2'' 134.4 31.3
C2 N1 C1' C2' 108.4 63.5
C2 N1 C1' H1' 352.3 300.0
C1' N1 C2 C6 207.6 188.7
C2 N1 C6 C5 45.2 39.6
C2 N1 C6 O6 283.9 277.7
C2 N1 C6 H6 165.6 161.5
O2 C2 N1 N3 180.0 180.1
N1 C2 N3 C4 336.4 350.7
N1 C2 N3 H3 156.4 171.5
C6 N1 C1' C2' 315.1 251.9
C6 N1 C1' H1' 199.0 128.4
C1' N1 C6 C2 151.7 171.6
C6 N1 C2 N3 354.4 351.4
C6 N1 C2 O2 174.4 171.5
O6 C6 N1 C5 238.6 238.1
C5 C6 N1 H6 239.6 238.1
N1 C6 C5 C4 304.4 307.8
N1 C6 C5 C5M 64.6 69.1
N1 C6 C5 O5 185.2 188.6
O6 C6 N1 H6 118.2 116.2
N1 C6 O6 HO6 196.8 324.4
C5 C6 N1 C2 45.2 39.6
N1 C6 C5 O6 236.8 239.3
N1 C6 C5 H6 118.4 121.3
O6 C6 C5 H6 241.6 242.0
C5 C6 O6 HO6 75.5 201.9
N3 C4 C5 C6 32.5 36.9
O4 C4 C5 C6 212.4 215.3
C4 C5 C6 C5M 239.8 238.8
C4 C5 C6 O5 119.2 119.2
C5M C5 C6 O5 239.4 240.4
C6 C5 C5M H71 282.3 193.1
C6 C5 C5M H72 42.4 313.1
C6 C5 C5M H73 162.4 73.0
C6 C5 O5 HO5 248.3 177.9
O6 C6 N1 C2 283.9 277.7
N1 C6 O6 C5 121.3 122.5
N1 C6 O6 H6 241.7 242.4
C5 C6 O6 H6 120.4 119.9
O6 C6 C5 C4 67.6 68.5
O6 C6 C5 C5M 187.8 189.7
O6 C6 C5 O5 308.4 309.3
H6 C6 N1 C2 165.6 161.5
N1 C6 H6 C5 240.6 237.3
N1 C6 H6 O6 121.3 117.1
O6 C6 H6 C5 119.4 120.2
H6 C6 C5 C4 185.9 186.6
H6 C6 C5 C5M 306.2 307.8
H6 C6 C5 O5 66.7 67.4
H6 C6 O6 HO6 315.1 82.0
HO6 O6 C6 C5 75.5 201.9
HO6 O6 C6 H6 315.1 82.0
N1 C2 N3 O2 180.0 180.1
C4 N3 C2 H3 180.0 179.3
C2 N3 C4 C5 7.6 353.2
C2 N3 C4 O4 187.7 174.9
N1 C2 O2 N3 180.0 179.9
O2 C2 N3 C4 156.4 170.6
O2 C2 N3 H3 336.4 351.4
C6 C5 C4 N3 32.5 36.9
C2 N3 C4 H3 180.0 180.7
O4 C4 N3 C5 180.1 181.7
N3 C4 C5 C5M 272.3 274.2
N3 C4 C5 O5 151.5 156.1
C2 N3 H3 C4 180.0 179.4
H3 N3 C4 C5 187.6 172.5
H3 N3 C4 O4 7.7 354.1
C4 C5 C6 H6 185.9 186.6
C6 C5 C4 C5M 120.2 122.7
C6 C5 C4 O5 241.0 240.8
C5 C4 N3 H3 187.6 172.5
N3 C4 C5 O4 180.1 181.7
C5M C5 C4 O5 120.8 118.1
C4 C5 C5M H71 40.5 314.7
C4 C5 C5M H72 160.5 74.8
C4 C5 C5M H73 280.5 194.7
C4 C5 O5 HO5 130.9 58.1
C6 C5 C4 O4 212.4 215.3
O4 C4 N3 H3 7.7 354.1
N3 C4 O4 C5 179.9 178.2
O4 C4 C5 C5M 92.2 92.6
O4 C4 C5 O5 331.4 334.4
C5M C5 C6 H6 306.2 307.8
C6 C5 C5M C4 241.8 238.4
C6 C5 C5M O5 120.7 119.9
C4 C5 C5M O5 238.8 241.5
C5M C5 O5 HO5 9.5 299.5
H71 C5M C5 H72 240.0 240.0
H71 C5M C5 H73 120.0 120.1
H72 C5M C5 H73 240.0 240.1
O5 C5 C6 H6 66.7 67.4
C6 C5 O5 C4 117.4 119.8
C6 C5 O5 C5M 238.9 238.4
C4 C5 O5 C5M 121.4 118.6
O5 C5 C5M H71 161.6 73.2
O5 C5 C5M H72 281.7 193.2
O5 C5 C5M H73 41.7 313.1
H71 C5M C5 O5 161.6 73.2
C5 C5M H71 H72 120.0 121.3
C5 C5M H71 H73 240.0 238.6
H72 C5M H71 H73 120.0 117.3
H72 C5M C5 O5 281.7 193.2
C5 C5M H72 H71 240.0 238.6
C5 C5M H72 H73 120.0 121.3
H71 C5M H72 H73 240.0 242.6
H73 C5M C5 O5 41.7 313.1
C5 C5M H73 H71 120.0 121.4
C5 C5M H73 H72 240.0 238.7
H71 C5M H73 H72 120.0 117.4
C2' C3' C4' H4' 141.7 146.9
C4' C3' C2' O3' 225.6 242.9
C4' C3' C2' H3' 120.1 123.0
C3' C2' C1' H1' 256.8 268.8
C1' C2' C3' H2' 120.0 242.5
C1' C2' C3' H2'' 237.5 120.8
H2' C2' C3' H2'' 117.6 238.3
O3' C3' C2' H3' 254.5 240.1
C2' C3' O3' HO3' 36.5 19.8
H2' C2' C1' H1' 16.8 151.9
C1' C2' H2' C3' 245.5 112.3
C1' C2' H2' H2'' 122.8 237.3
C3' C2' H2' H2'' 237.3 125.1
H2' C2' C3' O3' 352.4 201.1
H2' C2' C3' H3' 97.9 321.1
H2'' C2' C1' H1' 134.4 31.3
C1' C2' H2'' C3' 116.4 244.4
C1' C2' H2'' H2' 238.2 122.0
C3' C2' H2'' H2' 121.8 237.5
H2'' C2' C3' O3' 234.8 322.8
H2'' C2' C3' H3' 340.3 82.7
O3' C3' C4' H4' 4.9 29.9
C4' C3' O3' C2' 130.4 112.7
C4' C3' O3' H3' 242.6 236.1
O3' C3' C2' H2' 352.4 201.1
O3' C3' C2' H2'' 234.8 322.8
C2' C3' O3' H3' 112.2 123.4
H3' C3' C4' H4' 258.0 269.7
C4' C3' H3' C2' 243.9 242.9
C4' C3' H3' O3' 120.3 121.7
H3' C3' C2' H2' 97.9 321.1
H3' C3' C2' H2'' 340.3 82.7
C2' C3' H3' O3' 236.4 238.7
H3' C3' O3' HO3' 284.3 256.4
HO3' O3' C3' H3' 284.3 256.4