PDB Chemical Component CTC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CTC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.263  
C1 C2 1.402  
C1 C4B 1.556  
C2 C2' 1.398  
C2 C3 1.386  
C2' O2' 1.279  
C2' N2' 1.373  
N2' HN21 1.020  
N2' HN22 1.021  
C3 O3 1.445  
C3 C4 1.544  
O3 HO3 0.949  
C4 N4 1.577  
C4 C4A 1.585  
C4 H4 1.114  
N4 C4' 1.595  
N4 C4D 1.527  
C4' H4'1 1.115  
C4' H4'2 1.116  
C4' H4'3 1.115  
C4D H4A1 1.115  
C4D H4A2 1.115  
C4D H4A3 1.115  
C4A C5 1.580  
C4A C4B 1.570  
C4A H4A 1.115  
C5 C5A 1.574  
C5 H51 1.115  
C5 H52 1.114  
C5A C6 1.525  
C5A C5B 1.509  
C5A H5A 1.115  
C6 O6 1.425  
C6 C6' 1.551  
C6 C6A 1.605  
O6 HO6 0.950  
C6' H6'1 1.114  
C6' H6'2 1.115  
C6' H6'3 1.114  
C6A C7 1.425  
C6A C6B 1.400  
C7 CL7 1.768  
C7 C8 1.386  
C8 C9 1.360  
C8 H8 1.103  
C9 C10 1.393  
C9 H9 1.103  
C10 O10 1.441  
C10 C6B 1.429  
O10 HO1 0.951  
C6B C11 1.431  
C11 O11 1.260  
C11 C5B 1.443  
C5B C12 1.423  
C12 O12 1.443  
C12 C4B 1.592  
O12 HO2 0.950  
C4B O4B 1.439  
O4B HO4 0.950  

Bond Angles for CTC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 117.4  
O1 C1 C4B 117.3  
C2 C1 C4B 118.8  
C1 C2 C2' 120.1  
C1 C2 C3 118.0  
C1 C4B C4A 114.0  
C1 C4B C12 119.6  
C1 C4B O4B 101.8  
C2' C2 C3 119.1  
C2 C2' O2' 121.9  
C2 C2' N2' 120.4  
C2 C3 O3 119.5  
C2 C3 C4 122.2  
O2' C2' N2' 116.8  
C2' N2' HN21 116.8  
C2' N2' HN22 120.5  
HN21 N2' HN22 121.8  
O3 C3 C4 118.3  
C3 O3 HO3 119.5  
C3 C4 N4 102.6  
C3 C4 C4A 113.5  
C3 C4 H4 118.8  
N4 C4 C4A 124.7  
N4 C4 H4 105.6  
C4 N4 C4' 111.5  
C4 N4 C4D 117.7  
C4A C4 H4 92.4  
C4 C4A C5 117.1  
C4 C4A C4B 111.7  
C4 C4A H4A 101.3  
C4' N4 C4D 107.3  
N4 C4' H4'1 111.5  
N4 C4' H4'2 111.5  
N4 C4' H4'3 111.5  
N4 C4D H4A1 117.6  
N4 C4D H4A2 109.2  
N4 C4D H4A3 109.2  
H4'1 C4' H4'2 111.4  
H4'1 C4' H4'3 111.5  
H4'2 C4' H4'3 98.9  
H4A1 C4D H4A2 109.3  
H4A1 C4D H4A3 109.3  
H4A2 C4D H4A3 100.9  
C5 C4A C4B 106.2  
C5 C4A H4A 107.4  
C4A C5 C5A 119.6  
C4A C5 H51 108.5  
C4A C5 H52 108.6  
C4B C4A H4A 113.2  
C4A C4B C12 109.3  
C4A C4B O4B 106.9  
C5A C5 H51 108.6  
C5A C5 H52 108.6  
C5 C5A C6 118.5  
C5 C5A C5B 113.5  
C5 C5A H5A 101.1  
H51 C5 H52 101.4  
C6 C5A C5B 114.5  
C6 C5A H5A 99.7  
C5A C6 O6 105.4  
C5A C6 C6' 102.1  
C5A C6 C6A 115.4  
C5B C5A H5A 106.8  
C5A C5B C11 118.9  
C5A C5B C12 117.4  
O6 C6 C6' 114.3  
O6 C6 C6A 108.4  
C6 O6 HO6 105.5  
C6' C6 C6A 111.2  
C6 C6' H6'1 102.1  
C6 C6' H6'2 115.0  
C6 C6' H6'3 115.0  
C6 C6A C7 121.4  
C6 C6A C6B 119.4  
H6'1 C6' H6'2 115.0  
H6'1 C6' H6'3 115.1  
H6'2 C6' H6'3 95.5  
C7 C6A C6B 118.8  
C6A C7 CL7 122.4  
C6A C7 C8 121.4  
C6A C6B C10 117.8  
C6A C6B C11 119.1  
CL7 C7 C8 115.6  
C7 C8 C9 120.1  
C7 C8 H8 120.9  
C9 C8 H8 119.0  
C8 C9 C10 120.1  
C8 C9 H9 118.8  
C10 C9 H9 121.1  
C9 C10 O10 116.5  
C9 C10 C6B 121.5  
O10 C10 C6B 121.8  
C10 O10 HO1 116.5  
C10 C6B C11 120.5  
C6B C11 O11 117.3  
C6B C11 C5B 123.2  
O11 C11 C5B 119.5  
C11 C5B C12 122.4  
C5B C12 O12 119.9  
C5B C12 C4B 123.2  
O12 C12 C4B 116.8  
C12 O12 HO2 119.9  
C12 C4B O4B 103.7  
C4B O4B HO4 101.8  

Torsion Angles for CTC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 C4B 208.8  
O1 C1 C2 C2' 343.1  
O1 C1 C2 C3 144.0  
O1 C1 C4B C4A 174.7  
O1 C1 C4B C12 42.8  
O1 C1 C4B O4B 289.5  
O1 C1 C2 C4B 150.8  
C2 C1 C4B C4A 325.5  
C2 C1 C4B C12 193.6  
C2 C1 C4B O4B 80.3  
C2' C2 C1 C3 199.0  
C1 C2 C2' O2' 140.9  
C1 C2 C2' N2' 332.2  
C1 C2 C3 O3 221.9  
C1 C2 C3 C4 38.7  
O1 C1 C4B C2 209.2  
C4B C1 C2 C2' 192.3  
C4B C1 C2 C3 353.2  
C4 C4A C4B C1 43.4  
C5 C4A C4B C1 274.6  
C1 C4B C4A H4A 157.0  
C4A C4B C1 C12 131.9  
C4A C4B C1 O4B 245.3  
C5B C12 C4B C1 86.8  
O12 C12 C4B C1 270.3  
C12 C4B C1 O4B 113.3  
C1 C4B O4B HO4 180.0  
C2' C2 C1 C4B 192.3  
C1 C2 C2' C3 160.7  
C2' C2 C3 O3 23.0  
C2' C2 C3 C4 199.8  
O2' C2' C2 N2' 168.7  
C2 C2' N2' HN21 349.3  
C2 C2' N2' HN22 180.0  
C3 C2 C1 C4B 353.2  
C1 C2 C3 C2' 198.8  
C3 C2 C2' O2' 340.2  
C3 C2 C2' N2' 171.5  
O3 C3 C2 C4 183.2  
C2 C3 O3 HO3 180.0  
C2 C3 C4 N4 197.4  
C2 C3 C4 C4A 334.5  
C2 C3 C4 H4 81.4  
O2' C2' C2 C3 340.2  
C2 C2' O2' N2' 190.9  
O2' C2' N2' HN21 180.0  
O2' C2' N2' HN22 10.7  
N2' C2' C2 C3 171.5  
C2 C2' N2' O2' 169.3  
HN21 N2' C2' HN22 169.3  
C2' N2' HN21 HN22 190.8  
C2' N2' HN22 HN21 168.8  
C2 C3 O3 C4 177.0  
O3 C3 C4 N4 14.2  
O3 C3 C4 C4A 151.4  
O3 C3 C4 H4 258.3  
C2 C3 C4 O3 183.1  
C4 C3 O3 HO3 3.0  
N4 C4 C3 C4A 222.9  
N4 C4 C3 H4 116.0  
C3 C4 N4 C4' 76.8  
C3 C4 N4 C4D 201.4  
C4A C4 C3 H4 253.1  
C3 C4 C4A C5 106.7  
C3 C4 C4A C4B 344.0  
C3 C4 C4A H4A 223.1  
HO3 O3 C3 C4 3.0  
C3 C4 N4 C4A 130.7  
C3 C4 N4 H4 234.9  
C4A C4 N4 H4 104.2  
N4 C4 C4A C5 232.9  
N4 C4 C4A C4B 110.1  
N4 C4 C4A H4A 349.3  
C4' N4 C4 C4D 235.4  
C4 N4 C4' H4'1 180.0  
C4 N4 C4' H4'2 305.2  
C4 N4 C4' H4'3 54.7  
C4 N4 C4D H4A1 180.0  
C4 N4 C4D H4A2 305.2  
C4 N4 C4D H4A3 54.7  
C1 C4B C4A C4 43.4  
C3 C4 C4A N4 233.8  
C3 C4 C4A H4 123.0  
N4 C4 C4A H4 249.2  
C4A C4 N4 C4' 306.2  
C4A C4 N4 C4D 70.7  
C5 C4A C4 C4B 122.8  
C5 C4A C4 H4A 243.6  
C4 C4A C5 C5A 181.6  
C4 C4A C5 H51 306.8  
C4 C4A C5 H52 56.3  
C4B C4A C4 H4A 120.8  
C4 C4A C4B C12 180.2  
C4 C4A C4B O4B 291.8  
C3 C4 H4 N4 114.4  
C3 C4 H4 C4A 241.4  
N4 C4 H4 C4A 127.1  
H4 C4 N4 C4' 202.0  
H4 C4 N4 C4D 326.5  
H4 C4 C4A C5 343.8  
H4 C4 C4A C4B 221.0  
H4 C4 C4A H4A 100.2  
C4' N4 C4 C4A 306.2  
C4' N4 C4 H4 202.0  
C4 N4 C4' C4D 130.2  
C4' N4 C4D H4A1 306.6  
C4' N4 C4D H4A2 71.9  
C4' N4 C4D H4A3 181.4  
H4'1 C4' N4 H4'2 234.8  
H4'1 C4' N4 H4'3 125.3  
H4'2 C4' N4 H4'3 250.5  
C4D N4 C4 C4A 70.7  
C4D N4 C4 H4 326.5  
C4 N4 C4D C4' 233.4  
C4D N4 C4' H4'1 49.8  
C4D N4 C4' H4'2 175.0  
C4D N4 C4' H4'3 284.5  
H4A1 C4D N4 H4A2 234.8  
H4A1 C4D N4 H4A3 125.3  
H4A2 C4D N4 H4A3 250.5  
H4'1 C4' N4 C4D 49.8  
N4 C4' H4'1 H4'2 125.2  
N4 C4' H4'1 H4'3 234.7  
H4'2 C4' H4'1 H4'3 109.5  
H4'2 C4' N4 C4D 175.0  
N4 C4' H4'2 H4'1 234.7  
N4 C4' H4'2 H4'3 117.4  
H4'1 C4' H4'2 H4'3 242.6  
H4'3 C4' N4 C4D 284.5  
N4 C4' H4'3 H4'1 125.3  
N4 C4' H4'3 H4'2 242.7  
H4'1 C4' H4'3 H4'2 117.3  
N4 C4D H4A1 H4A2 125.2  
N4 C4D H4A1 H4A3 234.8  
H4A2 C4D H4A1 H4A3 109.6  
N4 C4D H4A2 H4A1 230.0  
N4 C4D H4A2 H4A3 114.9  
H4A1 C4D H4A2 H4A3 244.9  
N4 C4D H4A3 H4A1 130.0  
N4 C4D H4A3 H4A2 245.0  
H4A1 C4D H4A3 H4A2 115.1  
C1 C4B C4A C5 274.6  
C5 C4A C4 H4 343.8  
C4 C4A C5 C4B 234.4  
C4 C4A C5 H4A 113.0  
C4B C4A C5 H4A 238.6  
C5 C4A C4B C12 51.4  
C5 C4A C4B O4B 163.0  
C5A C5 C4A H51 234.8  
C5A C5 C4A H52 125.3  
C4A C5 C5A C6 176.9  
C4A C5 C5A C5B 38.4  
C4A C5 C5A H5A 284.5  
H51 C5 C4A H52 250.5  
C1 C4B C4A C12 223.2  
C1 C4B C4A O4B 111.7  
C4B C4A C4 H4 221.0  
C4 C4A C4B C5 128.8  
C4 C4A C4B H4A 246.4  
C5 C4A C4B H4A 117.6  
C4B C4A C5 C5A 307.2  
C4B C4A C5 H51 72.4  
C4B C4A C5 H52 181.9  
C5B C12 C4B C4A 312.9  
O12 C12 C4B C4A 136.3  
C12 C4B C4A O4B 248.4  
C4A C4B O4B HO4 299.8  
H4A C4A C4 H4 100.2  
C4 C4A H4A C5 236.7  
C4 C4A H4A C4B 119.7  
C5 C4A H4A C4B 243.1  
H4A C4A C5 C5A 68.6  
H4A C4A C5 H51 193.8  
H4A C4A C5 H52 303.3  
H4A C4A C4B C12 293.8  
H4A C4A C4B O4B 45.4  
C5A C5 C4A C4B 307.2  
C5A C5 C4A H4A 68.6  
C4A C5 C5A H51 125.2  
C4A C5 C5A H52 234.7  
H51 C5 C5A H52 109.5  
C6 C5A C5 C5B 138.5  
C6 C5A C5 H5A 252.5  
C5 C5A C6 O6 311.1  
C5 C5A C6 C6' 70.8  
C5 C5A C6 C6A 191.5  
C5B C5A C5 H5A 114.0  
C5 C5A C5B C11 167.6  
C5 C5A C5B C12 335.2  
H51 C5 C4A C4B 72.4  
H51 C5 C4A H4A 193.8  
C4A C5 H51 C5A 228.5  
C4A C5 H51 H52 114.3  
C5A C5 H51 H52 245.7  
H51 C5 C5A C6 51.7  
H51 C5 C5A C5B 273.2  
H51 C5 C5A H5A 159.3  
H52 C5 C4A C4B 181.9  
H52 C5 C4A H4A 303.3  
C4A C5 H52 C5A 131.5  
C4A C5 H52 H51 245.8  
C5A C5 H52 H51 114.3  
H52 C5 C5A C6 302.2  
H52 C5 C5A C5B 163.7  
H52 C5 C5A H5A 49.8  
C6 C5A C5 H51 51.7  
C6 C5A C5 H52 302.2  
C5 C5A C6 C5B 221.9  
C5 C5A C6 H5A 108.3  
C5B C5A C6 H5A 246.4  
C6 C5A C5B C11 27.4  
C6 C5A C5B C12 195.0  
O6 C6 C5A C6' 240.2  
O6 C6 C5A C6A 119.5  
C5A C6 O6 HO6 180.0  
C6' C6 C5A C6A 239.3  
C5A C6 C6' H6'1 180.0  
C5A C6 C6' H6'2 305.3  
C5A C6 C6' H6'3 54.7  
C5A C6 C6A C7 181.7  
C5A C6 C6A C6B 9.9  
C5B C5A C5 H51 273.2  
C5B C5A C5 H52 163.7  
C5 C5A C5B C6 140.2  
C5 C5A C5B H5A 249.5  
C6 C5A C5B H5A 109.3  
C5B C5A C6 O6 89.2  
C5B C5A C6 C6' 208.9  
C5B C5A C6 C6A 329.6  
C6B C11 C5B C5A 358.1  
O11 C11 C5B C5A 179.8  
C11 C5B C5A C12 192.4  
C5A C5B C12 O12 208.5  
C5A C5B C12 C4B 32.1  
H5A C5A C5 H51 159.3  
H5A C5A C5 H52 49.8  
C5 C5A H5A C6 238.2  
C5 C5A H5A C5B 118.9  
C6 C5A H5A C5B 240.6  
H5A C5A C6 O6 202.7  
H5A C5A C6 C6' 322.5  
H5A C5A C6 C6A 83.2  
H5A C5A C5B C11 278.1  
H5A C5A C5B C12 85.7  
O6 C6 C5A C5B 89.2  
O6 C6 C5A H5A 202.7  
C5A C6 O6 C6' 111.3  
C5A C6 O6 C6A 235.9  
C6' C6 O6 C6A 124.6  
O6 C6 C6' H6'1 293.3  
O6 C6 C6' H6'2 58.6  
O6 C6 C6' H6'3 168.0  
O6 C6 C6A C7 63.8  
O6 C6 C6A C6B 251.9  
C6' C6 C5A C5B 208.9  
C6' C6 C5A H5A 322.5  
C5A C6 C6' O6 246.7  
C5A C6 C6' C6A 123.6  
O6 C6 C6' C6A 236.9  
C6' C6 O6 HO6 68.7  
C6' C6 C6A C7 297.3  
C6' C6 C6A C6B 125.5  
H6'1 C6' C6 H6'2 234.8  
H6'1 C6' C6 H6'3 125.3  
H6'2 C6' C6 H6'3 250.6  
C6A C6 C5A C5B 329.6  
C6A C6 C5A H5A 83.2  
C5A C6 C6A O6 117.9  
C5A C6 C6A C6' 244.4  
O6 C6 C6A C6' 126.5  
C6A C6 O6 HO6 304.1  
C6A C6 C6' H6'1 56.4  
C6A C6 C6' H6'2 181.7  
C6A C6 C6' H6'3 291.1  
C7 C6A C6 C6B 171.8  
C6 C6A C7 CL7 355.9  
C6 C6A C7 C8 185.2  
C6 C6A C6B C10 177.5  
C6 C6A C6B C11 15.8  
HO6 O6 C6 C6' 68.7  
HO6 O6 C6 C6A 304.1  
H6'1 C6' C6 C6A 56.4  
C6 C6' H6'1 H6'2 125.2  
C6 C6' H6'1 H6'3 234.7  
H6'2 C6' H6'1 H6'3 109.5  
H6'2 C6' C6 C6A 181.7  
C6 C6' H6'2 H6'1 241.8  
C6 C6' H6'2 H6'3 120.9  
H6'1 C6' H6'2 H6'3 239.0  
H6'3 C6' C6 C6A 291.1  
C6 C6' H6'3 H6'1 118.2  
C6 C6' H6'3 H6'2 239.2  
H6'1 C6' H6'3 H6'2 120.9  
C6 C6A C7 C6B 188.1  
C7 C6A C6B C10 5.5  
C7 C6A C6B C11 203.8  
CL7 C7 C6A C8 170.8  
C6A C7 C8 C9 359.3  
C6A C7 C8 H8 179.3  
C6 C6A C6B C7 172.0  
C6B C6A C7 CL7 167.8  
C6B C6A C7 C8 357.0  
C9 C10 C6B C6A 355.2  
O10 C10 C6B C6A 170.4  
C10 C6B C6A C11 161.8  
C6A C6B C11 O11 157.5  
C6A C6B C11 C5B 339.2  
CL7 C7 C6A C6B 167.8  
C6A C7 CL7 C8 188.7  
CL7 C7 C8 C9 188.0  
CL7 C7 C8 H8 8.0  
C8 C7 C6A C6B 357.0  
C6A C7 C8 CL7 171.4  
C9 C8 C7 H8 180.0  
C7 C8 C9 C10 1.5  
C7 C8 C9 H9 181.5  
C7 C8 C9 H8 180.0  
C10 C9 C8 H9 180.0  
C8 C9 C10 O10 185.8  
C8 C9 C10 C6B 1.3  
C7 C8 H8 C9 180.0  
H8 C8 C9 C10 181.5  
H8 C8 C9 H9 1.5  
C6A C6B C10 C9 355.2  
C10 C9 C8 H8 181.5  
C8 C9 C10 H9 180.0  
O10 C10 C9 C6B 184.5  
C9 C10 O10 HO1 180.0  
C9 C10 C6B C11 156.7  
H9 C9 C8 H8 1.5  
C8 C9 H9 C10 180.0  
H9 C9 C10 O10 5.8  
H9 C9 C10 C6B 181.3  
C6A C6B C10 O10 170.4  
O10 C10 C9 H9 5.8  
C9 C10 O10 C6B 175.4  
O10 C10 C6B C11 331.9  
C6A C6B C10 C11 198.5  
C6B C10 C9 H9 181.3  
C9 C10 C6B O10 184.8  
C6B C10 O10 HO1 4.6  
C10 C6B C11 O11 356.2  
C10 C6B C11 C5B 178.0  
HO1 O10 C10 C6B 4.6  
C5A C5B C11 C6B 358.1  
C6A C6B C11 C10 161.2  
O11 C11 C6B C5B 178.3  
C6B C11 C5B C12 191.1  
C5A C5B C11 O11 179.8  
C6B C11 O11 C5B 181.7  
O11 C11 C5B C12 12.9  
C11 C5B C5A H5A 278.1  
C5A C5B C11 C12 166.9  
C6B C11 C5B O11 178.2  
C11 C5B C12 O12 15.6  
C11 C5B C12 C4B 199.2  
C1 C4B C12 C5B 86.8  
C4A C4B C12 C5B 312.9  
C12 C5B C5A H5A 85.7  
C5A C5B C12 C11 192.9  
O12 C12 C5B C4B 176.5  
C5B C12 O12 HO2 180.0  
C5B C12 C4B O4B 199.2  
C1 C4B C12 O12 270.3  
C4A C4B C12 O12 136.3  
C5B C12 O12 C4B 183.3  
O12 C12 C4B O4B 22.6  
C1 C4B C12 C4A 134.0  
C1 C4B C12 O4B 247.7  
C12 C4B C4A H4A 293.8  
C4A C4B C12 O4B 113.7  
C5B C12 C4B O12 176.6  
C4B C12 O12 HO2 356.7  
C12 C4B O4B HO4 55.2  
HO2 O12 C12 C4B 356.7  
C1 C4B O4B C4A 240.1  
C1 C4B O4B C12 124.8  
O4B C4B C4A H4A 45.4  
C4A C4B O4B C12 244.6