PDB Chemical Component CSL

Ideal Model

Chemical Description

Name (D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-PHOSPHATE
Synonyms (D)-2'-DEOXY-2'-SE-METHYLCYTIDINE-5'-PHOSPHATE
Formula C10 H16 N3 O7 P Se
Formal charge 0
Molecular weight 400.184 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms O3P H3T
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-Se-methyl-2'-selenocytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-4-methylselanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[Se][C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) C[Se][CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) C[Se][C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H16N3O7PSe/c1-22-8-7(14)5(4-19-21(16,17)18)20-9(8)13-3-2-6(11)12-10(13)15/h2-3,5,7-9,14H,4H2,1H3,(H2,11,12,15)(H2,16,17,18)/t5-,7-,8-,9-/m1/s1
InChIKey descriptor INVVCVIDTHAWAJ-ZOQUXTDFSA-N

Status Information

Last modified 2021-03-01
Created 2005-02-15
Release status REL
Model PDB code 1YLS
Processing site RCSB