PDB Chemical Component CSG

Ideal Model

Chemical Description

Name 2'-amino-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
Synonyms 2'-amino-2'-deoxycytidine-5'-triphosphate
Formula C9 H17 N4 O13 P3
Formal charge 0
Molecular weight 482.172 g/mol
Component type NON-POLYMER

Chemical features

Atom count 46
Chiral atom count 6
Chiral atoms C1' C2' C3' C4' PA PB
Bond count 47
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-amino-2'-deoxycytidine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-4-amino-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H]1[C@H](O)[C@@H](CO[P@@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) N[CH]1[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N
InChI descriptor InChI=1S/C9H17N4O13P3/c10-5-1-2-13(9(15)12-5)8-6(11)7(14)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,14H,3,11H2,(H,19,20)(H,21,22)(H2,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor WNVZQYHBHSLUHJ-XVFCMESISA-N

Status Information

Last modified 2020-06-17
Created 2009-04-23
Release status REL
Model PDB code 3H5X
Processing site RCSB