PDB Chemical Component CSD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CSD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.442 |
1.468 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.418 |
1.531 |
| CA |
C |
1.477 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
SG |
1.917 |
1.814 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| SG |
OD1 |
1.498 |
1.421 |
| SG |
OD2 |
1.553 |
1.522 |
| C |
O |
1.245 |
1.209 |
| C |
OXT |
1.376 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| OD2 |
HD2 |
0.950 |
0.967 |
Bond Angles for CSD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
CB |
87.8 |
109.5 |
| N |
CA |
C |
106.3 |
109.5 |
| N |
CA |
HA |
120.1 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
C |
96.6 |
109.5 |
| CB |
CA |
HA |
120.6 |
109.5 |
| CA |
CB |
SG |
117.4 |
109.5 |
| CA |
CB |
HB2 |
107.5 |
109.5 |
| CA |
CB |
HB3 |
107.5 |
109.5 |
| C |
CA |
HA |
119.3 |
109.5 |
| CA |
C |
O |
132.8 |
120.0 |
| CA |
C |
OXT |
113.6 |
120.0 |
| SG |
CB |
HB2 |
107.4 |
109.5 |
| SG |
CB |
HB3 |
107.5 |
109.5 |
| CB |
SG |
OD1 |
109.5 |
109.4 |
| CB |
SG |
OD2 |
101.5 |
103.0 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| OD1 |
SG |
OD2 |
103.9 |
103.0 |
| SG |
OD2 |
HD2 |
109.5 |
114.0 |
| O |
C |
OXT |
111.2 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for CSD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
263.8 |
240.0 |
| CB |
CA |
N |
HA |
124.5 |
120.0 |
| N |
CA |
CB |
SG |
260.4 |
300.0 |
| N |
CA |
CB |
HB2 |
21.5 |
60.0 |
| N |
CA |
CB |
HB3 |
139.3 |
180.0 |
| C |
CA |
N |
HA |
220.8 |
240.0 |
| N |
CA |
C |
O |
331.3 |
340.0 |
| N |
CA |
C |
OXT |
131.5 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
180.0 |
176.0 |
| H |
N |
CA |
C |
276.2 |
296.0 |
| H |
N |
CA |
HA |
55.5 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
300.0 |
300.0 |
| H2 |
N |
CA |
C |
36.2 |
60.0 |
| H2 |
N |
CA |
HA |
175.5 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
176.0 |
| CB |
CA |
N |
H2 |
300.0 |
300.0 |
| N |
CA |
CB |
C |
106.1 |
120.0 |
| N |
CA |
CB |
HA |
235.9 |
240.0 |
| C |
CA |
CB |
HA |
129.8 |
120.0 |
| CB |
CA |
C |
O |
60.9 |
100.0 |
| CB |
CA |
C |
OXT |
221.2 |
280.0 |
| SG |
CB |
CA |
HB2 |
238.9 |
240.0 |
| SG |
CB |
CA |
HB3 |
121.2 |
120.0 |
| CA |
CB |
SG |
OD1 |
199.4 |
71.0 |
| CA |
CB |
SG |
OD2 |
308.8 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
242.3 |
240.0 |
| C |
CA |
N |
H |
276.2 |
296.0 |
| C |
CA |
N |
H2 |
36.2 |
60.0 |
| N |
CA |
C |
CB |
270.4 |
240.0 |
| N |
CA |
C |
HA |
139.6 |
120.0 |
| CB |
CA |
C |
HA |
229.3 |
240.0 |
| C |
CA |
CB |
SG |
154.3 |
180.0 |
| C |
CA |
CB |
HB2 |
275.4 |
300.0 |
| C |
CA |
CB |
HB3 |
33.2 |
60.0 |
| O |
C |
CA |
OXT |
199.8 |
180.0 |
| CA |
C |
OXT |
HXT |
195.4 |
180.0 |
| HA |
CA |
N |
H |
55.5 |
56.0 |
| HA |
CA |
N |
H2 |
175.5 |
180.0 |
| N |
CA |
HA |
CB |
106.9 |
120.0 |
| N |
CA |
HA |
C |
225.9 |
240.0 |
| CB |
CA |
HA |
C |
119.0 |
120.0 |
| HA |
CA |
CB |
SG |
24.5 |
60.0 |
| HA |
CA |
CB |
HB2 |
145.6 |
180.0 |
| HA |
CA |
CB |
HB3 |
263.3 |
300.0 |
| HA |
CA |
C |
O |
191.7 |
220.0 |
| HA |
CA |
C |
OXT |
351.9 |
40.0 |
| SG |
CB |
CA |
C |
154.3 |
180.0 |
| SG |
CB |
CA |
HA |
24.5 |
60.0 |
| CA |
CB |
SG |
HB2 |
121.1 |
120.0 |
| CA |
CB |
SG |
HB3 |
238.8 |
240.0 |
| HB2 |
CB |
SG |
HB3 |
117.7 |
120.0 |
| OD1 |
SG |
CB |
OD2 |
250.6 |
251.0 |
| CB |
SG |
OD2 |
HD2 |
246.4 |
180.0 |
| HB2 |
CB |
CA |
C |
275.4 |
300.0 |
| HB2 |
CB |
CA |
HA |
145.6 |
180.0 |
| CA |
CB |
HB2 |
SG |
232.8 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
116.4 |
120.0 |
| SG |
CB |
HB2 |
HB3 |
243.6 |
240.0 |
| HB2 |
CB |
SG |
OD1 |
78.3 |
311.0 |
| HB2 |
CB |
SG |
OD2 |
187.7 |
60.0 |
| HB3 |
CB |
CA |
C |
33.2 |
60.0 |
| HB3 |
CB |
CA |
HA |
263.3 |
300.0 |
| CA |
CB |
HB3 |
SG |
127.2 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
243.6 |
240.0 |
| SG |
CB |
HB3 |
HB2 |
116.4 |
120.0 |
| HB3 |
CB |
SG |
OD1 |
320.6 |
190.9 |
| HB3 |
CB |
SG |
OD2 |
70.0 |
300.0 |
| OD1 |
SG |
CB |
HB2 |
78.3 |
311.0 |
| OD1 |
SG |
CB |
HB3 |
320.6 |
190.9 |
| CB |
SG |
OD1 |
OD2 |
107.7 |
109.0 |
| OD1 |
SG |
OD2 |
HD2 |
0.0 |
293.8 |
| OD2 |
SG |
CB |
HB2 |
187.7 |
60.0 |
| OD2 |
SG |
CB |
HB3 |
70.0 |
300.0 |
| CB |
SG |
OD2 |
OD1 |
246.4 |
246.2 |
| O |
C |
CA |
HA |
191.7 |
220.0 |
| CA |
C |
O |
OXT |
160.6 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| OXT |
C |
CA |
HA |
351.9 |
40.0 |
| CA |
C |
OXT |
O |
195.5 |
180.0 |