PDB Chemical Component CSC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CSC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.827 1.825
S1 C6 1.784 1.807
C2 C3 1.535 1.527
C2 H11 1.101 1.095
C2 H12 1.100 1.096
C3 C3' 1.360 1.511
C3 C4 1.484 1.354
C3' O1   1.412
C3' H3'1 1.100 1.085
C3' H3'2 1.100 1.086
C4 C4' 1.507 1.471
C4 N5 1.275 1.358
C4' O4A 1.222 1.346
C4' O4B 1.340 1.215
O4A H4A 0.950 0.981
N5 C6 1.470 1.452
N5 C8 2.713 1.351
C6 C7 1.540 1.539
C6 H6 1.100 1.097
C7 C8 1.512 1.551
C7 N10 1.452 1.473
C7 H7 1.100 1.092
C8 O9 1.151 1.208
N10 C11 1.366 1.386
N10 H10 0.999 1.016
C11 O12 1.197 1.230
C11 C13 1.523 1.517
C13 C14 1.530 1.529
C13 H131 1.100 1.097
C13 H132 1.100 1.096
C14 C15 1.556 1.536
C14 H141 1.100 1.096
C14 H142 1.100 1.096
C15 C16 1.550 1.533
C15 H151 1.100 1.097
C15 H152 1.100 1.097
C16 N17 1.490 1.491
C16 C18 1.547 1.514
C16 H16 1.100 1.095
N17 H171 1.000 1.023
N17 H172 1.000 1.023
N17 H173 1.000 1.023
C18 O19 1.338 1.224
C18 O20 1.174 1.358
O20 H20 0.950 0.981
O1 C1   1.372
C1 O2   1.223
C1 C20   1.499
C20 H201   1.093
C20 H202   1.093
C20 H203   1.093

Bond Angles for CSC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 95.3 93.5
S1 C2 C3 114.2 114.5
S1 C2 H11 107.9 106.2
S1 C2 H12 106.9 108.9
S1 C6 N5 112.3 108.6
S1 C6 C7 111.9 116.8
S1 C6 H6 104.9 115.1
C3 C2 H11 107.9 109.7
C3 C2 H12 106.8 109.5
C2 C3 C3' 116.7 112.0
C2 C3 C4 120.2 123.4
H11 C2 H12 113.2 107.8
C3' C3 C4 122.5 124.6
C3 C3' O1   109.3
C3 C3' H3'1 143.3 109.6
C3 C3' H3'2 146.6 108.9
C3 C4 C4' 128.2 121.5
C3 C4 N5 116.5 121.4
O1 C3' H3'1   109.8
O1 C3' H3'2   109.3
C3' O1 C1   116.1
H3'1 C3' H3'2 58.1 109.9
C4' C4 N5 109.7 117.0
C4 C4' O4A 119.2 109.4
C4 C4' O4B 121.1 124.3
C4 N5 C6 125.4 123.8
C4 N5 C8 154.0 139.1
O4A C4' O4B 119.6 126.4
C4' O4A H4A 109.5 111.7
C6 N5 C8 64.8 97.1
N5 C6 C7 106.3 86.3
N5 C6 H6 110.6 112.8
N5 C8 C7 62.1 89.5
N5 C8 O9 91.8 134.1
C7 C6 H6 111.0 113.6
C6 C7 C8 108.4 85.7
C6 C7 N10 113.8 118.2
C6 C7 H7 106.0 114.2
C8 C7 N10 105.2 113.2
C8 C7 H7 114.5 113.3
C7 C8 O9 128.2 136.2
N10 C7 H7 109.1 110.3
C7 N10 C11 119.3 122.5
C7 N10 H10 120.3 119.3
C11 N10 H10 120.3 118.2
N10 C11 O12 123.7 125.1
N10 C11 C13 114.7 113.1
O12 C11 C13 120.5 121.7
C11 C13 C14 110.4 112.7
C11 C13 H131 109.1 108.1
C11 C13 H132 108.9 108.7
C14 C13 H131 109.1 109.5
C14 C13 H132 108.9 110.7
C13 C14 C15 117.4 112.2
C13 C14 H141 106.9 110.1
C13 C14 H142 105.1 107.8
H131 C13 H132 110.2 106.9
C15 C14 H141 106.9 109.9
C15 C14 H142 105.1 109.6
C14 C15 C16 113.3 114.8
C14 C15 H151 108.2 108.9
C14 C15 H152 107.4 109.0
H141 C14 H142 115.9 107.0
C16 C15 H151 108.2 109.0
C16 C15 H152 107.3 108.7
C15 C16 N17 114.1 109.4
C15 C16 C18 106.5 112.9
C15 C16 H16 106.8 110.5
H151 C15 H152 112.5 106.2
N17 C16 C18 103.7 110.3
N17 C16 H16 109.4 105.0
C16 N17 H171 109.5 110.5
C16 N17 H172 109.5 110.5
C16 N17 H173 109.5 110.6
C18 C16 H16 116.6 108.4
C16 C18 O19 116.3 124.9
C16 C18 O20 123.1 112.1
H171 N17 H172 109.5 108.4
H171 N17 H173 109.4 108.4
H172 N17 H173 109.5 108.4
O19 C18 O20 120.7 122.9
C18 O20 H20 109.5 115.2
O1 C1 O2   125.8
O1 C1 C20   110.2
O2 C1 C20   124.0
C1 C20 H201   109.8
C1 C20 H202   109.8
C1 C20 H203   109.4
H201 C20 H202   110.6
H201 C20 H203   108.6
H202 C20 H203   108.6

Torsion Angles for CSC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C6 N5 52.5 61.0
C2 S1 C6 C7 172.0 156.5
C2 S1 C6 H6 292.4 293.4
C3 C2 S1 H11 240.0 121.2
C3 C2 S1 H12 117.9 237.1
S1 C2 C3 C3' 211.5 199.8
S1 C2 C3 C4 40.3 19.1
H11 C2 S1 H12 237.9 115.9
C6 S1 C2 C3 313.1 313.2
C6 S1 C2 H11 73.1 192.0
C6 S1 C2 H12 195.2 76.1
C4 N5 C6 S1 301.5 306.5
S1 C6 N5 C8 149.3 126.3
N5 C6 S1 C7 240.5 264.6
N5 C6 S1 H6 120.1 127.6
C7 C6 S1 H6 239.6 223.0
S1 C6 C7 C8 187.0 243.0
S1 C6 C7 N10 303.6 357.1
S1 C6 C7 H7 63.6 129.3
C3 C2 S1 C6 313.1 313.2
S1 C2 C3 H11 120.0 240.8
S1 C2 C3 H12 242.1 122.6
H11 C2 C3 H12 122.1 241.9
C3' C3 C2 C4 171.1 180.7
C2 C3 C3' O1   299.7
C2 C3 C3' H3'1 304.0 179.3
C2 C3 C3' H3'2 59.5 59.1
C2 C3 C4 C4' 178.6 187.6
C2 C3 C4 N5 329.2 4.6
H11 C2 S1 C6 73.1 192.0
S1 C2 H11 C3 236.1 124.2
S1 C2 H11 H12 118.1 243.4
C3 C2 H11 H12 242.0 119.2
H11 C2 C3 C3' 91.5 319.0
H11 C2 C3 C4 280.3 138.4
H12 C2 S1 C6 195.2 76.1
S1 C2 H12 C3 122.6 234.1
S1 C2 H12 H11 241.3 114.8
C3 C2 H12 H11 118.7 240.7
H12 C2 C3 C3' 329.4 77.1
H12 C2 C3 C4 158.2 256.5
C3' C3 C2 H11 91.5 319.0
C3' C3 C2 H12 329.4 77.1
C2 C3 C3' C4 189.1 179.3
C3' C3 C4 C4' 8.0 6.8
C3' C3 C4 N5 158.6 183.8
O1 C3' C3 H3'1   120.4
O1 C3' C3 H3'2   240.6
C3 C3' O1 C1   180.0
H3'1 C3' C3 H3'2 244.5 120.2
C4 C3 C2 H11 280.3 138.4
C4 C3 C2 H12 158.2 256.5
C2 C3 C4 C3' 170.6 180.7
C4 C3 C3' O1   120.3
C4 C3 C3' H3'1 114.9 359.9
C4 C3 C3' H3'2 230.4 239.7
C4' C4 C3 N5 209.4 183.0
C3 C4 C4' O4A 224.3 270.0
C3 C4 C4' O4B 48.4 90.0
C3 C4 N5 C6 41.0 14.6
C3 C4 N5 C8 146.5 195.0
O1 C3' C3 C4   120.3
C3 C3' O1 H3'1   239.7
C3 C3' O1 H3'2   119.1
H3'1 C3' O1 H3'2   239.4
C3' O1 C1 O2   360.0
C3' O1 C1 C20   180.0
H3'1 C3' C3 C4 114.9 359.9
C3 C3' H3'1 O1   120.1
C3 C3' H3'1 H3'2 144.2 240.4
O1 C3' H3'1 H3'2   120.3
H3'1 C3' O1 C1   300.3
H3'2 C3' C3 C4 230.4 239.7
C3 C3' H3'2 O1   240.6
C3 C3' H3'2 H3'1 219.5 120.1
O1 C3' H3'2 H3'1   239.5
H3'2 C3' O1 C1   60.9
C3 C4 C4' N5 152.2 177.1
C4' C4 N5 C6 196.8 191.8
C4' C4 N5 C8 302.3 12.1
O4A C4' C4 O4B 175.9 180.0
C4 C4' O4A H4A 184.0 180.0
S1 C6 N5 C4 301.5 306.5
C3 C4 N5 C4' 204.2 182.9
N5 C4 C4' O4A 72.1 92.9
N5 C4 C4' O4B 256.2 272.9
C6 N5 C4 C8 254.5 179.7
C4 N5 C6 C7 178.8 189.4
C4 N5 C6 H6 58.2 75.4
C4 N5 C8 C7 210.4 170.6
C4 N5 C8 O9 77.4 354.4
O4A C4' C4 N5 72.1 92.9
C4 C4' O4A O4B 184.0 180.0
O4B C4' C4 N5 256.2 272.9
C4 C4' O4B O4A 175.9 180.0
O4B C4' O4A H4A 0.0 0.0
H4A O4A C4' O4B 0.0 0.0
S1 C6 N5 C7 122.6 117.1
S1 C6 N5 H6 243.2 231.2
C4 N5 C6 C8 152.2 180.2
C6 N5 C8 C7 330.3 350.9
C6 N5 C8 O9 197.2 174.7
C7 C6 N5 H6 120.6 114.1
N5 C6 C7 C8 309.9 352.0
N5 C6 C7 N10 66.5 106.1
N5 C6 C7 H7 186.5 238.4
C4 N5 C8 C6 240.2 179.7
C8 N5 C6 C7 26.6 9.2
C8 N5 C6 H6 266.0 255.1
C6 C7 C8 N5 26.8 8.6
N5 C8 C7 N10 264.8 249.6
N5 C8 C7 H7 145.0 123.1
C7 C8 N5 O9 133.1 176.2
S1 C6 C7 N5 237.1 251.0
S1 C6 C7 H6 116.8 137.6
C7 C6 N5 C8 26.6 9.2
N5 C6 C7 H6 239.7 246.7
N5 C8 C7 C6 26.8 8.6
C8 C7 C6 N10 243.3 245.9
C8 C7 C6 H7 123.4 113.7
C6 C7 C8 O9 95.0 184.6
N10 C7 C6 H7 240.0 227.8
C6 C7 N10 C11 99.1 193.9
C6 C7 N10 H10 279.1 14.0
S1 C6 H6 N5 121.3 125.4
S1 C6 H6 C7 239.0 221.6
H6 C6 N5 C8 266.0 255.1
N5 C6 H6 C7 117.8 96.2
H6 C6 C7 C8 70.2 105.4
H6 C6 C7 N10 186.9 219.5
H6 C6 C7 H7 306.8 351.7
N5 C8 C7 O9 291.8 184.0
C8 C7 C6 H6 70.2 105.4
C6 C7 C8 N10 122.1 119.0
C6 C7 C8 H7 241.9 245.5
N10 C7 C8 H7 119.8 126.6
C8 C7 N10 C11 217.6 291.8
C8 C7 N10 H10 37.6 112.0
N10 C7 C6 H6 186.9 219.5
C6 C7 N10 C8 241.5 262.1
C6 C7 N10 H7 118.2 133.9
C8 C7 N10 H7 236.7 231.9
N10 C7 C8 O9 333.0 65.6
C11 N10 C7 H10 180.0 179.9
C7 N10 C11 O12 14.2 0.0
C7 N10 C11 C13 182.5 179.9
H7 C7 C6 H6 306.8 351.7
C6 C7 H7 C8 119.4 96.0
C6 C7 H7 N10 237.0 224.1
C8 C7 H7 N10 117.6 128.1
H7 C7 C8 O9 213.2 299.1
H7 C7 N10 C11 340.9 60.0
H7 C7 N10 H10 160.9 240.1
N5 C8 O9 C7 55.2 174.4
O9 C8 C7 N10 333.0 65.6
O9 C8 C7 H7 213.2 299.1
C11 N10 C7 H7 340.9 60.0
C7 N10 C11 H10 180.0 180.1
O12 C11 N10 C13 191.7 180.2
N10 C11 C13 C14 125.0 180.0
N10 C11 C13 H131 244.9 301.2
N10 C11 C13 H132 5.4 56.9
H10 N10 C7 H7 160.9 240.1
C7 N10 H10 C11 180.0 179.9
H10 N10 C11 O12 194.2 179.9
H10 N10 C11 C13 2.5 359.7
O12 C11 N10 H10 194.2 179.9
N10 C11 O12 C13 167.6 179.8
O12 C11 C13 C14 293.6 359.8
O12 C11 C13 H131 53.6 121.0
O12 C11 C13 H132 174.0 236.7
C13 C11 N10 H10 2.5 359.7
N10 C11 C13 O12 191.3 180.2
C14 C13 C11 H131 240.0 238.8
C14 C13 C11 H132 119.6 123.1
C11 C13 C14 C15 28.0 177.2
C11 C13 C14 H141 148.0 300.0
C11 C13 C14 H142 271.7 56.4
H131 C13 C11 H132 239.6 244.2
C11 C13 C14 H131 120.0 120.4
C11 C13 C14 H132 240.4 238.0
H131 C13 C14 H132 120.4 117.6
C15 C14 C13 H141 240.0 237.2
C15 C14 C13 H142 116.3 120.8
C13 C14 C15 C16 217.3 177.6
C13 C14 C15 H151 337.3 300.0
C13 C14 C15 H152 99.0 55.5
H141 C14 C13 H142 236.3 243.6
C11 C13 H131 C14 239.2 236.9
C11 C13 H131 H132 119.6 116.9
C14 C13 H131 H132 240.4 240.0
H131 C13 C14 C15 268.0 56.8
H131 C13 C14 H141 28.0 179.6
H131 C13 C14 H142 151.7 296.1
C11 C13 H132 C14 120.5 124.3
C11 C13 H132 H131 240.3 243.5
C14 C13 H132 H131 119.7 119.2
H132 C13 C14 C15 147.6 299.2
H132 C13 C14 H141 267.6 62.0
H132 C13 C14 H142 31.3 178.4
C15 C14 C13 H131 268.0 56.8
C15 C14 C13 H132 147.6 299.2
C13 C14 C15 H141 120.0 122.9
C13 C14 C15 H142 243.7 240.3
H141 C14 C15 H142 123.7 117.4
C16 C15 C14 H151 240.0 237.6
C16 C15 C14 H152 118.3 122.1
C14 C15 C16 N17 200.8 59.1
C14 C15 C16 C18 314.6 182.3
C14 C15 C16 H16 79.8 303.9
H151 C15 C14 H152 238.3 244.5
H141 C14 C13 H131 28.0 179.6
H141 C14 C13 H132 267.6 62.0
C13 C14 H141 C15 233.5 235.9
C13 C14 H141 H142 116.7 116.9
C15 C14 H141 H142 243.3 241.1
H141 C14 C15 C16 97.3 54.8
H141 C14 C15 H151 217.3 177.1
H141 C14 C15 H152 339.0 292.6
H142 C14 C13 H131 151.7 296.1
H142 C14 C13 H132 31.3 178.4
C13 C14 H142 C15 124.5 122.4
C13 C14 H142 H141 242.3 241.6
C15 C14 H142 H141 117.8 119.2
H142 C14 C15 C16 333.7 297.4
H142 C14 C15 H151 93.6 59.8
H142 C14 C15 H152 215.3 175.3
C16 C15 C14 H141 97.3 54.8
C16 C15 C14 H142 333.7 297.4
C14 C15 C16 H151 120.0 122.3
C14 C15 C16 H152 241.6 237.7
H151 C15 C16 H152 121.7 115.3
N17 C16 C15 C18 246.2 236.7
N17 C16 C15 H16 120.9 115.1
C15 C16 N17 H171 48.7 263.5
C15 C16 N17 H172 168.7 143.5
C15 C16 N17 H173 288.7 23.5
C18 C16 C15 H16 234.7 238.4
C15 C16 C18 O19 83.7 242.7
C15 C16 C18 O20 263.3 62.5
H151 C15 C14 H141 217.3 177.1
H151 C15 C14 H142 93.6 59.8
C14 C15 H151 C16 236.9 234.2
C14 C15 H151 H152 118.5 117.3
C16 C15 H151 H152 241.6 243.1
H151 C15 C16 N17 80.8 296.7
H151 C15 C16 C18 194.6 60.0
H151 C15 C16 H16 319.9 181.6
H152 C15 C14 H141 339.0 292.6
H152 C15 C14 H142 215.3 175.3
C14 C15 H152 C16 122.1 125.7
C14 C15 H152 H151 241.1 242.8
C16 C15 H152 H151 118.9 117.1
H152 C15 C16 N17 319.1 181.4
H152 C15 C16 C18 72.9 304.6
H152 C15 C16 H16 198.2 66.2
N17 C16 C15 H151 80.8 296.7
N17 C16 C15 H152 319.1 181.4
C15 C16 N17 C18 115.4 124.8
C15 C16 N17 H16 240.5 241.4
C18 C16 N17 H16 125.1 116.6
N17 C16 C18 O19 204.4 5.5
N17 C16 C18 O20 24.0 185.3
H171 N17 C16 H172 240.0 120.0
H171 N17 C16 H173 120.0 240.0
H172 N17 C16 H173 240.0 120.0
C18 C16 C15 H151 194.6 60.0
C18 C16 C15 H152 72.9 304.6
C15 C16 C18 N17 239.3 237.2
C15 C16 C18 H16 119.0 122.7
N17 C16 C18 H16 239.7 245.5
C18 C16 N17 H171 293.3 138.7
C18 C16 N17 H172 53.3 18.7
C18 C16 N17 H173 173.3 258.7
O19 C18 C16 O20 180.4 180.2
C16 C18 O20 H20 180.4 180.3
H16 C16 C15 H151 319.9 181.6
H16 C16 C15 H152 198.2 66.2
C15 C16 H16 N17 123.9 117.9
C15 C16 H16 C18 241.1 235.8
N17 C16 H16 C18 117.3 117.9
H16 C16 N17 H171 168.2 22.0
H16 C16 N17 H172 288.2 262.1
H16 C16 N17 H173 48.2 142.0
H16 C16 C18 O19 324.7 119.9
H16 C16 C18 O20 144.3 299.7
H171 N17 C16 C18 293.3 138.7
H171 N17 C16 H16 168.2 22.0
C16 N17 H171 H172 120.0 238.8
C16 N17 H171 H173 240.0 121.3
H172 N17 H171 H173 120.0 242.5
H172 N17 C16 C18 53.3 18.7
H172 N17 C16 H16 288.2 262.1
C16 N17 H172 H171 240.0 121.2
C16 N17 H172 H173 120.0 238.7
H171 N17 H172 H173 240.0 117.5
H173 N17 C16 C18 173.3 258.7
H173 N17 C16 H16 48.2 142.0
C16 N17 H173 H171 120.0 238.7
C16 N17 H173 H172 240.0 121.3
H171 N17 H173 H172 120.0 242.5
O19 C18 C16 H16 324.7 119.9
C16 C18 O19 O20 179.6 179.8
O19 C18 O20 H20 360.0 0.0
O20 C18 C16 H16 144.3 299.7
C16 C18 O20 O19 180.4 180.2
C1 O1 C3' H3'1   300.3
C1 O1 C3' H3'2   60.9
O2 C1 O1 C20   180.0
O1 C1 C20 H201   61.2
O1 C1 C20 H202   299.4
O1 C1 C20 H203   180.3
O1 C1 O2 C20   180.0
O2 C1 C20 H201   241.2
O2 C1 C20 H202   119.4
O2 C1 C20 H203   0.3
O1 C1 C20 O2   180.0
H201 C20 C1 H202   121.8
H201 C20 C1 H203   240.9
H202 C20 C1 H203   119.0
C1 C20 H201 H202   238.6
C1 C20 H201 H203   119.6
H202 C20 H201 H203   241.0
C1 C20 H202 H201   121.4
C1 C20 H202 H203   240.5
H201 C20 H202 H203   119.1
C1 C20 H203 H201   240.1
C1 C20 H203 H202   119.8
H201 C20 H203 H202   239.7