PDB Chemical Component CR9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CR9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.417 1.402
C1 C6 1.400 1.392
C1 C7 1.403 1.477
C2 F2 1.375 1.352
C2 C3 1.392 1.379
C3 C4 1.379 1.389
C3 HC3 1.081 1.080
C4 C5 1.344 1.409
C4 N3 1.285 1.380
C5 C6 1.400 1.394
C5 N4 1.322 1.357
C6 HC6 1.078 1.080
C7 N1 1.317 1.333
C7 N2 1.317 1.334
N1 HH11 1.014 0.970
N1 HH12 0.997 0.970
N2 HH21 1.006 0.970
N2 HH22 0.995 0.969
N3 C8 1.299 1.369
N3 HN3 0.992 0.970
N4 C8 1.325 1.311
C8 C1' 1.417 1.477
C1' C2' 1.401 1.396
C1' C6' 1.419 1.399
C2' C3' 1.397 1.378
C2' HC2' 1.080 1.081
C3' C4' 1.377 1.384
C3' HC3' 1.082 1.080
C4' C5' 1.396 1.386
C4' HC4' 1.079 1.080
C5' C6' 1.421 1.391
C5' O5' 1.399 1.360
C6' O6' 1.389 1.359
O5' C6B 1.443 1.428
C1B C2B 1.585 1.530
C1B C6B 1.554 1.530
C1B C1A 1.507 1.529
C1B H1B 1.079 1.090
C2B C3B 1.524 1.530
C2B H2A 1.081 1.090
C2B H2B 1.083 1.090
C3B C4B 1.558 1.530
C3B H3A 1.084 1.090
C3B H3B 1.077 1.090
C4B C5B 1.560 1.529
C4B H4A 1.081 1.091
C4B H4B 1.077 1.090
C5B C6B 1.536 1.531
C5B H5A 1.082 1.090
C5B H5B 1.079 1.090
C6B H6B 1.082 1.090
C1A H1AA 1.077 1.090
C1A H1AB 1.083 1.091
C1A H1AC 1.083 1.090

Bond Angles for CR9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 118.9 120.2
C2 C1 C7 121.0 119.9
C1 C2 F2 120.9 119.9
C1 C2 C3 120.5 120.3
C6 C1 C7 120.1 119.9
C1 C6 C5 119.2 119.7
C1 C6 HC6 120.5 120.1
C1 C7 N1 121.2 120.0
C1 C7 N2 117.8 120.0
F2 C2 C3 118.5 119.8
C2 C3 C4 118.2 120.0
C2 C3 HC3 121.7 120.0
C4 C3 HC3 120.1 120.0
C3 C4 C5 122.8 120.2
C3 C4 N3 132.1 133.7
C5 C4 N3 105.1 106.2
C4 C5 C6 120.4 119.7
C4 C5 N4 113.2 107.2
C4 N3 C8 107.6 107.3
C4 N3 HN3 129.7 126.3
C6 C5 N4 126.3 133.2
C5 C6 HC6 120.3 120.2
C5 N4 C8 100.1 109.6
N1 C7 N2 121.0 120.0
C7 N1 HH11 117.3 120.0
C7 N1 HH12 126.7 120.0
C7 N2 HH21 120.4 120.0
C7 N2 HH22 122.9 120.0
HH11 N1 HH12 116.0 120.0
HH21 N2 HH22 116.6 120.0
C8 N3 HN3 122.6 126.4
N3 C8 N4 114.0 109.8
N3 C8 C1' 121.9 125.1
N4 C8 C1' 124.0 125.1
C8 C1' C2' 119.8 120.2
C8 C1' C6' 121.6 120.2
C2' C1' C6' 118.6 119.7
C1' C2' C3' 120.9 120.0
C1' C2' HC2' 120.1 120.0
C1' C6' C5' 120.3 119.7
C1' C6' O6' 118.7 120.2
C3' C2' HC2' 119.1 120.0
C2' C3' C4' 120.1 120.3
C2' C3' HC3' 120.4 119.9
C4' C3' HC3' 119.5 119.8
C3' C4' C5' 121.4 120.3
C3' C4' HC4' 118.5 119.9
C5' C4' HC4' 120.0 119.8
C4' C5' C6' 118.7 119.9
C4' C5' O5' 118.2 120.0
C6' C5' O5' 123.1 120.0
C5' C6' O6' 121.0 120.1
C5' O5' C6B 125.0 106.8
O5' C6B C1B 111.3 109.5
O5' C6B C5B 107.4 109.5
O5' C6B H6B 110.4 109.5
C2B C1B C6B 112.0 109.5
C2B C1B C1A 106.3 109.5
C2B C1B H1B 109.0 109.5
C1B C2B C3B 111.0 109.5
C1B C2B H2A 110.6 109.4
C1B C2B H2B 110.7 109.4
C6B C1B C1A 108.5 109.5
C6B C1B H1B 110.3 109.5
C1B C6B C5B 106.7 109.5
C1B C6B H6B 109.5 109.5
C1A C1B H1B 110.9 109.5
C1B C1A H1AA 111.3 109.5
C1B C1A H1AB 109.9 109.5
C1B C1A H1AC 108.4 109.5
C3B C2B H2A 107.3 109.5
C3B C2B H2B 109.0 109.5
C2B C3B C4B 109.0 109.5
C2B C3B H3A 109.1 109.5
C2B C3B H3B 110.5 109.5
H2A C2B H2B 108.1 109.5
C4B C3B H3A 109.1 109.5
C4B C3B H3B 110.7 109.5
C3B C4B C5B 110.9 109.5
C3B C4B H4A 110.5 109.5
C3B C4B H4B 108.3 109.5
H3A C3B H3B 108.4 109.5
C5B C4B H4A 110.2 109.5
C5B C4B H4B 109.8 109.5
C4B C5B C6B 105.7 109.5
C4B C5B H5A 109.5 109.5
C4B C5B H5B 110.2 109.5
H4A C4B H4B 107.1 109.4
C6B C5B H5A 110.2 109.4
C6B C5B H5B 111.6 109.5
C5B C6B H6B 111.4 109.4
H5A C5B H5B 109.5 109.4
H1AA C1A H1AB 109.6 109.4
H1AA C1A H1AC 109.1 109.5
H1AB C1A H1AC 108.5 109.4

Torsion Angles for CR9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 179.6 180.1
C2 C1 C6 C5 0.1 359.9
C2 C1 C6 HC6 179.9 179.9
C2 C1 C7 N1 205.8 301.8
C2 C1 C7 N2 26.3 121.8
F2 C2 C1 C3 181.4 179.9
C1 C2 C3 C4 359.4 359.9
C1 C2 C3 HC3 179.5 180.0
C2 C1 C6 C7 180.4 179.9
C6 C1 C2 F2 181.6 180.0
C6 C1 C2 C3 0.2 0.1
C6 C1 C7 N1 26.2 121.7
C6 C1 C7 N2 206.6 301.7
C4 C5 C6 C1 359.8 0.0
C1 C6 C5 N4 180.2 180.4
C5 C6 C1 HC6 180.2 180.0
C2 C1 C7 C6 179.6 180.1
C7 C1 C2 F2 2.0 359.9
C7 C1 C2 C3 180.6 180.0
C7 C1 C6 C5 179.8 180.0
C7 C1 C6 HC6 359.5 0.0
N1 C7 C1 N2 179.5 179.9
C1 C7 N1 HH11 356.4 0.1
C1 C7 N1 HH12 179.5 180.0
C1 C7 N2 HH21 4.1 173.5
C1 C7 N2 HH22 180.8 353.5
F2 C2 C1 C6 181.6 180.0
F2 C2 C1 C7 2.0 359.9
C1 C2 F2 C3 178.7 180.1
F2 C2 C3 C4 178.1 180.0
F2 C2 C3 HC3 358.2 0.0
C3 C2 C1 C6 0.2 0.1
C3 C2 C1 C7 180.6 180.0
C1 C2 C3 F2 181.3 179.9
C4 C3 C2 HC3 179.9 180.0
C2 C3 C4 C5 0.5 0.0
C2 C3 C4 N3 179.7 180.0
C2 C3 C4 HC3 180.1 180.0
C5 C4 C3 N3 180.8 180.0
C3 C4 C5 C6 359.8 0.0
C3 C4 C5 N4 179.5 179.7
C3 C4 N3 C8 180.7 180.0
C3 C4 N3 HN3 0.8 0.0
C2 C3 HC3 C4 179.9 180.0
HC3 C3 C4 C5 180.5 180.0
HC3 C3 C4 N3 359.6 360.0
C1 C6 C5 C4 359.8 0.0
C5 C4 C3 HC3 180.5 180.0
C3 C4 C5 N3 179.4 180.0
C5 C4 N3 C8 360.0 360.0
C5 C4 N3 HN3 180.1 180.0
C6 C5 C4 N4 180.4 180.3
C4 C5 C6 HC6 180.1 180.0
C4 C5 N4 C8 359.8 0.5
N3 C4 C3 HC3 359.6 360.0
C3 C4 N3 C5 180.7 180.0
N3 C4 C5 C6 180.5 180.0
N3 C4 C5 N4 0.1 359.7
C8 N3 C4 HN3 179.9 180.0
C4 N3 C8 N4 359.9 0.3
C4 N3 C8 C1' 182.9 180.0
C5 C6 C1 C7 179.8 180.0
C1 C6 C5 HC6 179.8 180.0
C6 C5 C4 N3 180.5 180.0
C4 C5 C6 N4 179.6 179.6
C6 C5 N4 C8 179.5 180.1
N4 C5 C4 N3 0.1 359.7
C4 C5 N4 C6 180.4 180.3
N4 C5 C6 HC6 0.5 0.4
N3 C8 N4 C5 0.1 359.5
C5 N4 C8 C1' 177.1 179.8
HC6 C6 C1 C7 359.5 0.0
C1 C6 HC6 C5 180.2 180.0
HC6 C6 C5 N4 0.5 0.4
C1 C7 N1 N2 180.5 180.1
N1 C7 N2 HH21 184.6 353.6
N1 C7 N2 HH22 1.2 173.6
HH11 N1 C7 HH12 176.8 180.1
C1 C7 N2 N1 179.5 179.9
N2 C7 N1 HH11 175.9 180.0
N2 C7 N1 HH12 359.0 359.9
HH21 N2 C7 HH22 183.3 180.0
HH11 N1 C7 N2 175.9 180.0
C7 N1 HH11 HH12 182.8 179.9
HH12 N1 C7 N2 359.0 359.9
C7 N1 HH12 HH11 176.9 180.1
C7 N2 HH21 HH22 176.9 180.0
C7 N2 HH22 HH21 183.2 180.0
C4 N3 C8 HN3 180.1 180.0
C5 N4 C8 N3 0.1 359.5
N4 C8 N3 C1' 177.0 180.3
N3 C8 C1' C2' 174.7 40.0
N3 C8 C1' C6' 354.6 220.3
C4 N3 HN3 C8 179.9 179.9
HN3 N3 C8 N4 179.9 180.3
HN3 N3 C8 C1' 2.8 360.0
N4 C8 N3 HN3 179.9 180.3
N3 C8 N4 C1' 183.0 179.7
N4 C8 C1' C2' 357.9 219.7
N4 C8 C1' C6' 177.8 39.9
C1' C8 N3 HN3 2.8 360.0
N3 C8 C1' N4 176.7 180.3
C2' C1' C8 C6' 180.1 179.8
C8 C1' C2' C3' 180.1 180.0
C8 C1' C2' HC2' 0.1 360.0
C8 C1' C6' C5' 179.8 180.3
C8 C1' C6' O6' 0.3 359.8
C8 C1' C2' C6' 179.9 180.2
C2' C1' C6' C5' 359.7 0.5
C2' C1' C6' O6' 180.2 180.0
C3' C2' C1' HC2' 180.0 180.0
C1' C2' C3' C4' 359.8 360.0
C1' C2' C3' HC3' 179.9 180.0
C8 C1' C6' C2' 180.1 179.8
C6' C1' C2' C3' 0.2 359.7
C6' C1' C2' HC2' 180.2 179.7
C4' C5' C6' C1' 0.2 359.5
C1' C6' C5' O5' 180.6 179.7
C5' C6' C1' O6' 179.6 180.5
C3' C2' C1' C6' 0.2 359.7
C1' C2' C3' HC2' 180.0 180.0
C4' C3' C2' HC3' 179.9 180.0
C2' C3' C4' C5' 0.1 0.0
C2' C3' C4' HC4' 180.2 180.1
HC2' C2' C1' C6' 180.2 179.7
C1' C2' HC2' C3' 180.0 180.0
HC2' C2' C3' C4' 179.9 180.0
HC2' C2' C3' HC3' 360.0 0.0
C4' C3' C2' HC2' 179.9 180.0
C2' C3' C4' HC3' 180.1 180.0
C5' C4' C3' HC4' 180.0 179.9
C3' C4' C5' C6' 359.8 0.3
C3' C4' C5' O5' 179.4 180.0
HC3' C3' C2' HC2' 360.0 0.0
C2' C3' HC3' C4' 179.9 180.0
HC3' C3' C4' C5' 180.0 180.0
HC3' C3' C4' HC4' 0.1 0.0
C1' C6' C5' C4' 0.2 359.5
C5' C4' C3' HC3' 180.0 180.0
C3' C4' C5' HC4' 180.0 180.1
C6' C5' C4' O5' 180.4 180.3
C4' C5' C6' O6' 179.8 180.0
C4' C5' O5' C6B 43.2 353.5
HC4' C4' C3' HC3' 0.1 0.0
C3' C4' HC4' C5' 180.0 179.9
HC4' C4' C5' C6' 179.8 180.2
HC4' C4' C5' O5' 359.4 359.9
C1' C6' C5' O6' 180.4 179.5
C6' C5' C4' HC4' 179.8 180.2
C4' C5' C6' O5' 179.6 179.7
C6' C5' O5' C6B 222.8 173.2
O5' C5' C4' HC4' 359.4 359.9
C4' C5' O5' C6' 180.4 180.3
O5' C5' C6' O6' 0.2 0.3
C5' O5' C6B C1B 197.9 202.3
C5' O5' C6B C5B 81.5 82.2
C5' O5' C6B H6B 319.8 322.3
C1' C6' O6' C5' 179.6 180.5
O6' C6' C5' O5' 0.2 0.3
C2B C1B C6B O5' 182.1 180.0
O5' C6B C1B C1A 65.2 60.0
O5' C6B C1B H1B 303.5 300.0
C1B C6B O5' C5B 116.5 120.0
C1B C6B O5' H6B 238.1 240.0
C4B C5B C6B O5' 185.2 180.0
O5' C6B C5B H5A 303.4 60.0
O5' C6B C5B H5B 65.4 300.1
C5B C6B O5' H6B 121.7 120.0
O5' C6B C1B C2B 182.1 180.0
C6B C1B C2B C1A 241.8 240.0
C6B C1B C2B H1B 122.2 120.0
C2B C1B C6B C5B 298.9 300.1
C2B C1B C6B H6B 59.7 60.0
C1A C1B C2B H1B 240.4 240.0
C2B C1B C1A H1AA 182.4 60.0
C2B C1B C1A H1AB 303.9 180.0
C2B C1B C1A H1AC 62.3 300.0
C3B C2B C1B H2A 241.0 240.0
C3B C2B C1B H2B 121.1 120.0
C1B C2B C3B C4B 308.3 300.0
C1B C2B C3B H3A 189.2 60.0
C1B C2B C3B H3B 70.2 180.0
H2A C2B C1B H2B 240.2 240.0
O5' C6B C1B C5B 243.2 239.9
O5' C6B C1B H6B 122.4 120.0
C2B C1B C6B C1A 116.9 120.0
C2B C1B C6B H1B 238.5 240.0
C6B C1B C2B C3B 54.4 60.0
C6B C1B C2B H2A 173.4 180.0
C6B C1B C2B H2B 293.2 300.0
C1A C1B C6B H1B 121.6 120.0
C6B C1B C1A H1AA 302.9 180.0
C6B C1B C1A H1AB 64.4 300.0
C6B C1B C1A H1AC 182.9 60.0
C4B C5B C6B C1B 65.8 59.9
C1B C6B C5B H5A 184.0 300.0
C1B C6B C5B H5B 305.9 180.0
C5B C6B C1B H6B 239.3 240.1
C2B C1B C1A C6B 239.5 240.0
C2B C1B C1A H1B 118.3 120.0
C1A C1B C2B C3B 172.6 180.0
C1A C1B C2B H2A 291.6 300.0
C1A C1B C2B H2B 51.5 60.0
C6B C1B C1A H1B 238.8 240.0
C1A C1B C6B C5B 182.0 180.0
C1A C1B C6B H6B 302.7 300.0
H1AA C1A C1B H1AB 238.4 240.0
H1AA C1A C1B H1AC 120.0 120.1
H1AB C1A C1B H1AC 241.6 240.0
C2B C1B H1B C6B 123.2 120.0
C2B C1B H1B C1A 243.4 240.0
H1B C1B C2B C3B 292.2 300.0
H1B C1B C2B H2A 51.2 60.0
H1B C1B C2B H2B 171.0 180.0
C6B C1B H1B C1A 120.1 120.0
H1B C1B C6B C5B 60.4 60.1
H1B C1B C6B H6B 181.1 180.0
H1B C1B C1A H1AA 64.1 300.0
H1B C1B C1A H1AB 185.7 60.0
H1B C1B C1A H1AC 304.1 180.0
C3B C2B C1B C6B 54.4 60.0
C3B C2B C1B C1A 172.6 180.0
C3B C2B C1B H1B 292.2 300.0
C1B C2B C3B H2A 121.0 120.0
C1B C2B C3B H2B 237.9 240.1
H2A C2B C3B H2B 116.9 120.1
C4B C3B C2B H3A 119.1 240.0
C4B C3B C2B H3B 238.1 120.0
C2B C3B C4B C5B 60.2 60.0
C2B C3B C4B H4A 182.7 180.0
C2B C3B C4B H4B 299.7 300.0
H3A C3B C2B H3B 119.1 240.0
H2A C2B C1B C6B 173.4 180.0
H2A C2B C1B C1A 291.6 300.0
H2A C2B C1B H1B 51.2 60.0
C1B C2B H2A C3B 238.7 240.0
C1B C2B H2A H2B 121.4 120.0
C3B C2B H2A H2B 242.6 239.9
H2A C2B C3B C4B 187.3 180.1
H2A C2B C3B H3A 68.2 300.0
H2A C2B C3B H3B 309.1 60.1
H2B C2B C1B C6B 293.2 300.0
H2B C2B C1B C1A 51.5 60.0
H2B C2B C1B H1B 171.0 180.0
C1B C2B H2B C3B 122.3 120.0
C1B C2B H2B H2A 238.7 240.0
C3B C2B H2B H2A 116.3 120.0
H2B C2B C3B C4B 70.4 60.0
H2B C2B C3B H3A 311.4 179.9
H2B C2B C3B H3B 192.3 300.0
C4B C3B C2B H2A 187.3 180.1
C4B C3B C2B H2B 70.4 60.0
C2B C3B C4B H3A 240.9 120.0
C2B C3B C4B H3B 121.8 240.0
H3A C3B C4B H3B 240.9 120.0
C5B C4B C3B H4A 237.5 239.9
C5B C4B C3B H4B 120.5 120.0
C3B C4B C5B C6B 292.5 300.0
C3B C4B C5B H5A 173.8 60.0
C3B C4B C5B H5B 53.2 180.0
H4A C4B C3B H4B 243.0 240.1
H3A C3B C2B H2A 68.2 300.0
H3A C3B C2B H2B 311.4 179.9
C2B C3B H3A C4B 119.0 240.0
C2B C3B H3A H3B 239.6 120.0
C4B C3B H3A H3B 120.6 240.0
H3A C3B C4B C5B 179.3 300.0
H3A C3B C4B H4A 301.8 60.1
H3A C3B C4B H4B 58.8 180.0
H3B C3B C2B H2A 309.1 60.1
H3B C3B C2B H2B 192.3 300.0
C2B C3B H3B C4B 239.1 120.0
C2B C3B H3B H3A 119.6 240.0
C4B C3B H3B H3A 240.4 120.0
H3B C3B C4B C5B 298.4 180.0
H3B C3B C4B H4A 60.9 300.0
H3B C3B C4B H4B 177.9 60.0
O5' C6B C5B C4B 185.2 180.0
C1B C6B C5B C4B 65.8 59.9
C5B C4B C3B H3A 179.3 300.0
C5B C4B C3B H3B 298.4 180.0
C3B C4B C5B H4A 122.7 120.1
C3B C4B C5B H4B 240.4 240.0
H4A C4B C5B H4B 117.7 119.9
C6B C5B C4B H5A 118.7 240.0
C6B C5B C4B H5B 239.3 120.1
C4B C5B C6B H6B 306.3 300.0
H5A C5B C4B H5B 120.6 240.0
H4A C4B C3B H3A 301.8 60.1
H4A C4B C3B H3B 60.9 300.0
C3B C4B H4A C5B 237.1 239.9
C3B C4B H4A H4B 117.7 120.0
C5B C4B H4A H4B 240.6 240.0
H4A C4B C5B C6B 169.8 180.0
H4A C4B C5B H5A 51.1 299.9
H4A C4B C5B H5B 290.5 59.9
H4B C4B C3B H3A 58.8 180.0
H4B C4B C3B H3B 177.9 60.0
C3B C4B H4B C5B 121.2 120.0
C3B C4B H4B H4A 240.8 240.0
C5B C4B H4B H4A 119.7 120.0
H4B C4B C5B C6B 52.0 60.0
H4B C4B C5B H5A 293.4 180.0
H4B C4B C5B H5B 172.8 300.0
O5' C6B C5B C1B 119.4 120.1
O5' C6B C5B H6B 239.0 240.0
C5B C6B C1B C1A 182.0 180.0
C5B C6B C1B H1B 60.4 60.1
C1B C6B C5B H6B 119.5 120.0
C6B C5B C4B H4A 169.8 180.0
C6B C5B C4B H4B 52.0 60.0
C4B C5B C6B H5A 241.8 120.0
C4B C5B C6B H5B 119.9 239.9
H5A C5B C6B H5B 238.1 119.9
H5A C5B C4B H4A 51.1 299.9
H5A C5B C4B H4B 293.4 180.0
C4B C5B H5A C6B 115.9 240.0
C4B C5B H5A H5B 239.0 120.0
C6B C5B H5A H5B 123.1 240.0
H5A C5B C6B H6B 64.5 180.0
H5B C5B C4B H4A 290.5 59.9
H5B C5B C4B H4B 172.8 300.0
C4B C5B H5B C6B 242.9 120.1
C4B C5B H5B H5A 120.5 240.0
C6B C5B H5B H5A 237.7 119.9
H5B C5B C6B H6B 186.4 60.1
O5' C6B H6B C1B 237.1 240.0
O5' C6B H6B C5B 119.2 120.0
H6B C6B C1B C1A 302.7 300.0
H6B C6B C1B H1B 181.1 180.0
C1B C6B H6B C5B 242.2 240.0
H6B C6B C5B H5A 64.5 180.0
H6B C6B C5B H5B 186.4 60.1
H1AA C1A C1B H1B 64.1 300.0
C1B C1A H1AA H1AB 121.8 120.0
C1B C1A H1AA H1AC 240.4 239.9
H1AB C1A H1AA H1AC 118.6 119.9
H1AB C1A C1B H1B 185.7 60.0
C1B C1A H1AB H1AA 237.4 240.0
C1B C1A H1AB H1AC 118.4 120.0
H1AA C1A H1AB H1AC 241.0 240.1
H1AC C1A C1B H1B 304.1 180.0
C1B C1A H1AC H1AA 121.4 120.1
C1B C1A H1AC H1AB 240.7 240.0
H1AA C1A H1AC H1AB 119.3 119.9