PDB Chemical Component CPU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CPU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.419	1.383
C1	C6	1.462	1.381
C1	H1	1.103	1.080
C2	C3	1.427	1.382
C2	H2	1.104	1.080
C3	C4	1.443	1.382
C3	H3	1.103	1.080
C4	C5	1.428	1.382
C4	H4	1.103	1.079
C5	C6	1.427	1.382
C5	H5	1.103	1.080
C6	C7	1.539	1.507
N1	C9	1.456	1.463
N1	C10	1.368	1.347
N1	HN1	1.021	0.970
C7	C8	1.543	1.530
C7	H72	1.115	1.091
C7	H71	1.114	1.090
C8	C9	1.516	1.529
C8	H82	1.115	1.089
C8	H81	1.116	1.089
C9	H92	1.114	1.090
C9	H91	1.114	1.090
C10	O1	1.242	1.216
C10	N2	1.387	1.346
N2	C11	1.499	1.464
N2	HN2	1.020	0.970
C11	C12	1.575	1.530
C11	C16	1.570	1.529
C11	H11	1.114	1.091
C12	C13	1.587	1.530
C12	H121	1.116	1.090
C12	H122	1.115	1.090
C13	C14	1.586	1.529
C13	H131	1.115	1.090
C13	H132	1.114	1.090
C14	C15	1.597	1.529
C14	H141	1.115	1.090
C14	H142	1.114	1.091
C15	C16	1.581	1.529
C15	H151	1.115	1.090
C15	H152	1.114	1.090
C16	H161	1.115	1.090
C16	H162	1.115	1.090

Bond Angles for CPU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.9	120.0
C2	C1	H1	118.0	120.0
C1	C2	C3	118.8	120.0
C1	C2	H2	120.3	120.0
C6	C1	H1	121.1	120.0
C1	C6	C5	119.9	120.0
C1	C6	C7	117.5	120.1
C3	C2	H2	120.9	120.0
C2	C3	C4	120.6	120.0
C2	C3	H3	119.1	120.0
C4	C3	H3	120.3	120.0
C3	C4	C5	120.9	120.0
C3	C4	H4	120.1	120.0
C5	C4	H4	119.1	120.0
C4	C5	C6	118.9	120.0
C4	C5	H5	120.6	120.0
C6	C5	H5	120.5	120.0
C5	C6	C7	122.6	119.9
C6	C7	C8	121.9	109.5
C6	C7	H72	107.8	109.4
C6	C7	H71	107.8	109.5
C9	N1	C10	119.3	120.1
C9	N1	HN1	108.6	120.0
N1	C9	C8	117.7	109.5
N1	C9	H92	109.3	109.5
N1	C9	H91	109.2	109.4
C10	N1	HN1	108.7	119.9
N1	C10	O1	115.6	119.9
N1	C10	N2	121.1	120.2
C8	C7	H72	107.8	109.4
C8	C7	H71	107.8	109.5
C7	C8	C9	102.0	109.5
C7	C8	H82	115.1	109.4
C7	C8	H81	115.1	109.5
H72	C7	H71	102.1	109.5
C9	C8	H82	115.1	109.5
C9	C8	H81	115.0	109.5
C8	C9	H92	109.2	109.5
C8	C9	H91	109.2	109.5
H82	C8	H81	95.4	109.5
H92	C9	H91	100.9	109.4
O1	C10	N2	123.4	119.9
C10	N2	C11	129.4	120.1
C10	N2	HN2	110.5	119.9
C11	N2	HN2	120.0	119.9
N2	C11	C12	108.0	109.5
N2	C11	C16	113.7	109.6
N2	C11	H11	107.5	109.5
C12	C11	C16	109.3	109.4
C12	C11	H11	112.1	109.4
C11	C12	C13	115.6	109.5
C11	C12	H121	109.9	109.5
C11	C12	H122	110.0	109.4
C16	C11	H11	106.2	109.4
C11	C16	C15	110.3	109.5
C11	C16	H161	111.9	109.4
C11	C16	H162	111.9	109.4
C13	C12	H121	110.0	109.5
C13	C12	H122	110.0	109.5
C12	C13	C14	112.6	109.5
C12	C13	H131	111.0	109.5
C12	C13	H132	111.0	109.5
H121	C12	H122	100.2	109.5
C14	C13	H131	111.1	109.5
C14	C13	H132	111.1	109.5
C13	C14	C15	114.5	109.5
C13	C14	H141	110.4	109.5
C13	C14	H142	110.4	109.5
H131	C13	H132	99.3	109.5
C15	C14	H141	110.4	109.6
C15	C14	H142	110.4	109.5
C14	C15	C16	113.1	109.5
C14	C15	H151	110.9	109.4
C14	C15	H152	110.9	109.5
H141	C14	H142	99.9	109.4
C16	C15	H151	110.8	109.5
C16	C15	H152	110.9	109.5
C15	C16	H161	112.0	109.5
C15	C16	H162	111.9	109.5
H151	C15	H152	99.5	109.4
H161	C16	H162	98.5	109.5

Torsion Angles for CPU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	H1	180.0	179.9
C2	C1	C6	C5	0.0	0.3
C2	C1	C6	C7	180.7	180.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	359.9	0.0
C1	C2	C3	H3	180.0	180.0
C2	C1	C6	H1	180.0	180.1
C6	C1	C2	C3	0.1	359.9
C6	C1	C2	H2	180.1	179.9
C4	C5	C6	C1	360.0	359.5
C1	C6	C5	H5	179.9	179.9
C5	C6	C1	C7	179.3	180.3
C1	C6	C7	C8	233.2	90.0
C1	C6	C7	H72	358.4	330.1
C1	C6	C7	H71	107.9	210.0
C2	C1	H1	C6	180.0	179.9
H1	C1	C2	C3	180.0	180.0
H1	C1	C2	H2	0.0	0.0
H1	C1	C6	C5	180.0	180.2
H1	C1	C6	C7	0.8	359.9
C3	C2	C1	C6	0.1	359.9
C3	C2	C1	H1	180.0	180.0
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	C5	0.1	359.8
C2	C3	C4	H4	180.1	180.0
H2	C2	C1	C6	180.1	179.9
H2	C2	C1	H1	0.0	0.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	179.9	180.0
H2	C2	C3	H3	359.9	360.0
C4	C3	C2	H2	179.9	180.0
C2	C3	C4	H3	180.0	179.9
C5	C4	C3	H4	180.0	179.8
C3	C4	C5	C6	0.0	0.4
C3	C4	C5	H5	180.1	180.1
H3	C3	C2	H2	359.9	360.0
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C5	180.0	179.8
H3	C3	C4	H4	0.0	0.0
C1	C6	C5	C4	360.0	359.5
C5	C4	C3	H3	180.0	179.8
C3	C4	C5	H4	180.0	180.2
C6	C5	C4	H5	179.9	180.4
C4	C5	C6	C7	179.2	179.8
H4	C4	C3	H3	0.0	0.0
C3	C4	H4	C5	180.0	179.8
H4	C4	C5	C6	180.0	180.3
H4	C4	C5	H5	0.0	359.9
C5	C6	C1	H1	180.0	180.2
C1	C6	C5	C7	180.8	179.7
C6	C5	C4	H4	180.0	180.3
C4	C5	C6	H5	180.1	179.6
C5	C6	C7	C8	53.9	269.7
C5	C6	C7	H72	179.2	149.8
C5	C6	C7	H71	288.7	29.7
H5	C5	C4	H4	0.0	359.9
C4	C5	H5	C6	179.9	180.4
H5	C5	C6	C7	359.1	0.2
C7	C6	C1	H1	0.8	359.9
C1	C6	C7	C5	179.2	180.3
C7	C6	C5	H5	359.1	0.2
C8	C7	C6	H72	234.8	119.9
C8	C7	C6	H71	125.3	240.0
C6	C7	C8	C9	177.1	180.0
C6	C7	C8	H82	302.4	60.0
C6	C7	C8	H81	51.8	300.1
H72	C7	C6	H71	250.5	120.0
C10	N1	C9	HN1	125.2	180.0
C9	N1	C10	O1	179.8	360.0
C9	N1	C10	N2	359.6	180.3
C7	C8	C9	N1	180.9	180.0
N1	C9	C8	H82	55.6	300.0
N1	C9	C8	H81	306.2	60.0
C8	C9	N1	H92	234.8	240.0
C8	C9	N1	H91	125.2	120.0
H92	C9	N1	H91	250.5	240.1
C9	N1	C10	HN1	234.8	180.0
C10	N1	C9	C8	178.1	180.0
C10	N1	C9	H92	303.3	300.1
C10	N1	C9	H91	52.9	60.0
O1	C10	N1	N2	180.3	179.7
N1	C10	N2	C11	179.8	179.7
N1	C10	N2	HN2	359.8	359.7
C9	N1	HN1	C10	131.2	180.0
HN1	N1	C9	C8	52.8	0.0
HN1	N1	C9	H92	178.1	120.1
HN1	N1	C9	H91	287.6	240.0
HN1	N1	C10	O1	305.0	180.0
HN1	N1	C10	N2	124.8	0.3
C6	C7	C8	H72	125.2	240.1
C6	C7	C8	H71	234.7	120.1
N1	C9	C8	C7	180.9	180.0
H72	C7	C8	H71	109.5	240.0
C9	C8	C7	H82	234.7	120.0
C9	C8	C7	H81	125.2	239.9
C7	C8	C9	H92	55.6	60.0
C7	C8	C9	H91	306.1	300.0
H82	C8	C7	H81	250.5	120.0
C6	C7	H72	C8	226.8	120.0
C6	C7	H72	H71	113.4	240.0
C8	C7	H72	H71	246.6	120.0
H72	C7	C8	C9	51.9	299.9
H72	C7	C8	H82	177.2	180.0
H72	C7	C8	H81	286.6	60.0
C6	C7	H71	C8	133.2	239.9
C6	C7	H71	H72	246.6	120.0
C8	C7	H71	H72	113.4	240.0
H71	C7	C8	C9	302.3	59.9
H71	C7	C8	H82	67.6	300.0
H71	C7	C8	H81	177.1	180.0
C8	C9	N1	C10	178.1	180.0
C8	C9	N1	HN1	52.8	0.0
N1	C9	C8	H92	125.3	120.0
N1	C9	C8	H91	234.8	240.0
C9	C8	C7	H72	51.9	299.9
C9	C8	C7	H71	302.3	59.9
C7	C8	C9	H82	125.3	240.0
C7	C8	C9	H81	234.7	120.0
H82	C8	C9	H81	109.4	240.0
H92	C9	C8	H91	109.5	119.9
H82	C8	C7	H72	177.2	180.0
H82	C8	C7	H71	67.6	300.0
C7	C8	H82	C9	241.8	120.0
C7	C8	H82	H81	120.9	240.0
C9	C8	H82	H81	239.1	120.0
H82	C8	C9	H92	290.3	179.9
H82	C8	C9	H91	180.8	60.0
H81	C8	C7	H72	286.6	60.0
H81	C8	C7	H71	177.1	180.0
C7	C8	H81	C9	118.2	240.0
C7	C8	H81	H82	239.1	120.0
C9	C8	H81	H82	120.9	240.0
H81	C8	C9	H92	180.9	299.9
H81	C8	C9	H91	71.4	180.0
H92	C9	N1	C10	303.3	300.1
H92	C9	N1	HN1	178.1	120.1
N1	C9	H92	C8	230.0	240.0
N1	C9	H92	H91	115.0	119.9
H92	C9	C8	H82	290.3	179.9
H92	C9	C8	H81	180.9	299.9
C8	C9	H92	H91	245.0	240.0
H91	C9	N1	C10	52.9	60.0
H91	C9	N1	HN1	287.6	240.0
N1	C9	H91	C8	130.0	120.0
N1	C9	H91	H92	244.9	240.0
H91	C9	C8	H82	180.8	60.0
H91	C9	C8	H81	71.4	180.0
C8	C9	H91	H92	115.0	120.0
O1	C10	N1	HN1	305.0	180.0
N1	C10	O1	N2	179.7	180.3
O1	C10	N2	C11	359.5	360.0
O1	C10	N2	HN2	179.5	180.0
N2	C10	N1	HN1	124.8	0.3
N1	C10	N2	O1	180.3	179.7
C11	N2	C10	HN2	180.0	180.0
C10	N2	C11	C12	146.9	150.0
C10	N2	C11	C16	25.3	270.0
C10	N2	C11	H11	268.0	30.0
C10	N2	C11	HN2	180.0	180.0
C12	C11	N2	C16	121.5	240.0
C12	C11	N2	H11	238.8	119.9
N2	C11	C12	C13	180.1	180.1
N2	C11	C12	H121	305.4	300.1
N2	C11	C12	H122	54.8	60.1
C16	C11	N2	H11	117.3	240.0
N2	C11	C16	C15	180.6	180.0
N2	C11	C16	H161	305.9	300.0
N2	C11	C16	H162	55.3	59.9
C10	N2	HN2	C11	180.0	180.0
HN2	N2	C11	C12	326.9	329.9
HN2	N2	C11	C16	205.4	90.0
HN2	N2	C11	H11	88.1	210.0
C12	C11	N2	HN2	326.9	329.9
N2	C11	C12	C16	235.8	120.1
N2	C11	C12	H11	118.3	240.0
C16	C11	C12	H11	242.5	119.9
C12	C11	C16	C15	59.8	300.0
C12	C11	C16	H161	185.1	60.1
C12	C11	C16	H162	294.5	180.0
C13	C12	C11	H121	234.7	240.0
C13	C12	C11	H122	125.3	120.0
C11	C12	C13	C14	45.4	300.0
C11	C12	C13	H131	170.6	60.0
C11	C12	C13	H132	280.1	180.0
H121	C12	C11	H122	250.6	240.0
C16	C11	N2	HN2	205.4	90.0
N2	C11	C16	C12	120.8	239.9
N2	C11	C16	H11	241.9	120.0
C12	C11	C16	H11	121.1	240.1
C16	C11	C12	C13	304.3	59.9
C16	C11	C12	H121	69.6	180.0
C16	C11	C12	H122	179.0	300.0
C14	C15	C16	C11	303.4	60.0
C11	C16	C15	H151	178.1	300.0
C11	C16	C15	H152	68.7	180.0
C15	C16	C11	H161	234.7	239.9
C15	C16	C11	H162	125.3	120.0
H161	C16	C11	H162	250.6	240.1
H11	C11	N2	HN2	88.1	210.0
N2	C11	H11	C12	241.4	120.0
N2	C11	H11	C16	122.1	239.9
C12	C11	H11	C16	240.7	119.9
H11	C11	C12	C13	61.8	300.0
H11	C11	C12	H121	187.1	60.1
H11	C11	C12	H122	296.5	180.0
H11	C11	C16	C15	298.7	59.9
H11	C11	C16	H161	64.0	180.0
H11	C11	C16	H162	173.4	299.9
C13	C12	C11	C16	304.3	59.9
C13	C12	C11	H11	61.8	300.0
C11	C12	C13	H121	125.2	120.0
C11	C12	C13	H122	234.7	240.0
H121	C12	C13	H122	109.5	120.0
C14	C13	C12	H131	234.8	240.0
C14	C13	C12	H132	125.3	120.0
C12	C13	C14	C15	320.2	59.9
C12	C13	C14	H141	85.5	180.0
C12	C13	C14	H142	194.9	300.0
H131	C13	C12	H132	250.5	240.0
H121	C12	C11	C16	69.6	180.0
H121	C12	C11	H11	187.1	60.1
C11	C12	H121	C13	231.6	240.0
C11	C12	H121	H122	115.7	120.0
C13	C12	H121	H122	244.1	240.0
H121	C12	C13	C14	280.2	180.0
H121	C12	C13	H131	45.4	300.0
H121	C12	C13	H132	154.9	60.0
H122	C12	C11	C16	179.0	300.0
H122	C12	C11	H11	296.5	180.0
C11	C12	H122	C13	128.4	120.0
C11	C12	H122	H121	244.3	240.0
C13	C12	H122	H121	115.9	120.0
H122	C12	C13	C14	170.7	60.0
H122	C12	C13	H131	295.9	180.0
H122	C12	C13	H132	45.4	300.0
C14	C13	C12	H121	280.2	180.0
C14	C13	C12	H122	170.7	60.0
C12	C13	C14	H131	125.2	120.0
C12	C13	C14	H132	234.8	240.0
H131	C13	C14	H132	109.6	120.0
C15	C14	C13	H141	234.8	239.9
C15	C14	C13	H142	125.3	120.0
C13	C14	C15	C16	46.6	300.0
C13	C14	C15	H151	171.8	60.1
C13	C14	C15	H152	281.3	180.0
H141	C14	C13	H142	250.6	240.1
H131	C13	C12	H121	45.4	300.0
H131	C13	C12	H122	295.9	180.0
C12	C13	H131	C14	233.9	240.0
C12	C13	H131	H132	116.9	120.0
C14	C13	H131	H132	243.0	240.0
H131	C13	C14	C15	195.0	300.0
H131	C13	C14	H141	320.3	60.1
H131	C13	C14	H142	69.7	180.0
H132	C13	C12	H121	154.9	60.0
H132	C13	C12	H122	45.4	300.0
C12	C13	H132	C14	126.1	120.0
C12	C13	H132	H131	243.1	240.0
C14	C13	H132	H131	117.0	120.0
H132	C13	C14	C15	85.5	179.9
H132	C13	C14	H141	210.7	300.0
H132	C13	C14	H142	320.2	60.0
C11	C16	C15	C14	303.4	60.0
C15	C14	C13	H131	195.0	300.0
C15	C14	C13	H132	85.5	179.9
C13	C14	C15	H141	125.2	120.0
C13	C14	C15	H142	234.7	240.0
H141	C14	C15	H142	109.5	120.0
C16	C15	C14	H151	234.8	239.9
C16	C15	C14	H152	125.3	120.0
C14	C15	C16	H161	178.1	300.0
C14	C15	C16	H162	68.6	180.0
H151	C15	C14	H152	250.5	240.1
H141	C14	C13	H131	320.3	60.1
H141	C14	C13	H132	210.7	300.0
C13	C14	H141	C15	232.5	240.0
C13	C14	H141	H142	116.2	120.0
C15	C14	H141	H142	243.8	240.0
H141	C14	C15	C16	281.4	180.0
H141	C14	C15	H151	46.6	300.0
H141	C14	C15	H152	156.1	60.0
H142	C14	C13	H131	69.7	180.0
H142	C14	C13	H132	320.2	60.0
C13	C14	H142	C15	127.6	120.0
C13	C14	H142	H141	243.8	240.0
C15	C14	H142	H141	116.2	120.1
H142	C14	C15	C16	171.9	60.0
H142	C14	C15	H151	297.1	180.0
H142	C14	C15	H152	46.6	300.0
C15	C16	C11	H11	298.7	59.9
C11	C16	C15	H161	125.3	120.0
C11	C16	C15	H162	234.7	240.1
C16	C15	C14	H141	281.4	180.0
C16	C15	C14	H142	171.9	60.0
C14	C15	C16	H151	125.2	120.0
C14	C15	C16	H152	234.7	240.0
H151	C15	C16	H152	109.5	120.0
H161	C16	C15	H162	109.5	120.0
H151	C15	C14	H141	46.6	300.0
H151	C15	C14	H142	297.1	180.0
C14	C15	H151	C16	233.5	239.9
C14	C15	H151	H152	116.8	119.9
C16	C15	H151	H152	243.2	240.0
H151	C15	C16	H161	52.9	180.0
H151	C15	C16	H162	303.4	60.0
H152	C15	C14	H141	156.1	60.0
H152	C15	C14	H142	46.6	300.0
C14	C15	H152	C16	126.5	120.0
C14	C15	H152	H151	243.2	240.1
C16	C15	H152	H151	116.7	120.0
H152	C15	C16	H161	303.4	60.0
H152	C15	C16	H162	193.9	300.0
H161	C16	C11	H11	64.0	180.0
C11	C16	H161	C15	235.6	239.9
C11	C16	H161	H162	117.8	119.9
H161	C16	C15	H151	52.9	180.0
H161	C16	C15	H152	303.4	60.0
C15	C16	H161	H162	242.1	239.9
H162	C16	C11	H11	173.4	299.9
C11	C16	H162	C15	124.3	120.0
C11	C16	H162	H161	242.2	240.1
H162	C16	C15	H151	303.4	60.0
H162	C16	C15	H152	193.9	300.0
C15	C16	H162	H161	117.9	120.1