PDB Chemical Component CPM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CPM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CA1 |
CA |
1.641 |
1.529 |
| CA1 |
S |
1.740 |
1.813 |
| CA1 |
HA11 |
1.115 |
1.090 |
| CA1 |
HA12 |
1.114 |
1.090 |
| CA |
C |
1.683 |
1.506 |
| CA |
CB |
1.678 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.389 |
1.208 |
| C |
OXT |
1.334 |
1.343 |
| CB |
CG |
1.669 |
1.507 |
| CB |
HB1 |
1.115 |
1.090 |
| CB |
HB2 |
1.114 |
1.089 |
| CG |
CD1 |
1.575 |
1.381 |
| CG |
CD2 |
1.511 |
1.382 |
| CD1 |
CE1 |
1.622 |
1.382 |
| CD1 |
HD1 |
1.103 |
1.081 |
| CD2 |
CE2 |
1.628 |
1.382 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.176 |
1.383 |
| CE1 |
HE1 |
1.103 |
1.080 |
| CE2 |
CZ |
1.593 |
1.381 |
| CE2 |
HE2 |
1.103 |
1.080 |
| CZ |
HZ |
1.103 |
1.080 |
| OXT |
HXT |
0.950 |
0.967 |
| S |
N1 |
1.620 |
1.494 |
| S |
N2 |
1.571 |
1.493 |
| S |
CM |
1.748 |
1.814 |
| N1 |
HN1 |
1.019 |
0.970 |
| N2 |
HN2 |
1.021 |
0.971 |
| CM |
HM1 |
1.116 |
1.090 |
| CM |
HM2 |
1.115 |
1.089 |
| CM |
HM3 |
1.114 |
1.089 |
Bond Angles for CPM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
CA1 |
S |
107.7 |
109.5 |
| CA |
CA1 |
HA11 |
112.8 |
109.5 |
| CA |
CA1 |
HA12 |
112.9 |
109.5 |
| CA1 |
CA |
C |
102.4 |
109.4 |
| CA1 |
CA |
CB |
93.8 |
109.5 |
| CA1 |
CA |
HA |
120.7 |
109.5 |
| S |
CA1 |
HA11 |
112.8 |
109.5 |
| S |
CA1 |
HA12 |
112.9 |
109.5 |
| CA1 |
S |
N1 |
105.4 |
109.4 |
| CA1 |
S |
N2 |
111.3 |
109.5 |
| CA1 |
S |
CM |
107.6 |
109.5 |
| HA11 |
CA1 |
HA12 |
97.7 |
109.4 |
| C |
CA |
CB |
103.3 |
109.5 |
| C |
CA |
HA |
113.2 |
109.5 |
| CA |
C |
O |
118.6 |
120.0 |
| CA |
C |
OXT |
109.4 |
120.0 |
| CB |
CA |
HA |
120.1 |
109.5 |
| CA |
CB |
CG |
98.7 |
109.5 |
| CA |
CB |
HB1 |
116.3 |
109.5 |
| CA |
CB |
HB2 |
116.3 |
109.5 |
| O |
C |
OXT |
132.0 |
119.9 |
| C |
OXT |
HXT |
109.4 |
120.0 |
| CG |
CB |
HB1 |
116.4 |
109.4 |
| CG |
CB |
HB2 |
116.3 |
109.5 |
| CB |
CG |
CD1 |
113.1 |
120.0 |
| CB |
CG |
CD2 |
118.0 |
120.0 |
| HB1 |
CB |
HB2 |
94.1 |
109.5 |
| CD1 |
CG |
CD2 |
128.9 |
120.0 |
| CG |
CD1 |
CE1 |
105.5 |
120.0 |
| CG |
CD1 |
HD1 |
126.1 |
120.0 |
| CG |
CD2 |
CE2 |
118.0 |
120.0 |
| CG |
CD2 |
HD2 |
117.4 |
120.0 |
| CE1 |
CD1 |
HD1 |
128.4 |
120.0 |
| CD1 |
CE1 |
CZ |
125.6 |
120.0 |
| CD1 |
CE1 |
HE1 |
134.5 |
120.0 |
| CE2 |
CD2 |
HD2 |
124.5 |
120.0 |
| CD2 |
CE2 |
CZ |
106.0 |
120.0 |
| CD2 |
CE2 |
HE2 |
127.8 |
120.0 |
| CZ |
CE1 |
HE1 |
99.9 |
120.0 |
| CE1 |
CZ |
CE2 |
135.9 |
120.0 |
| CE1 |
CZ |
HZ |
91.7 |
120.0 |
| CZ |
CE2 |
HE2 |
126.2 |
120.0 |
| CE2 |
CZ |
HZ |
132.4 |
120.0 |
| N1 |
S |
N2 |
115.8 |
109.4 |
| N1 |
S |
CM |
107.8 |
109.4 |
| S |
N1 |
HN1 |
112.0 |
120.0 |
| N2 |
S |
CM |
108.7 |
109.5 |
| S |
N2 |
HN2 |
111.5 |
119.9 |
| S |
CM |
HM1 |
107.5 |
109.5 |
| S |
CM |
HM2 |
112.9 |
109.5 |
| S |
CM |
HM3 |
112.9 |
109.4 |
| HM1 |
CM |
HM2 |
112.9 |
109.4 |
| HM1 |
CM |
HM3 |
112.9 |
109.4 |
| HM2 |
CM |
HM3 |
97.6 |
109.5 |
Torsion Angles for CPM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| S |
CA1 |
CA |
HA11 |
234.8 |
120.0 |
| S |
CA1 |
CA |
HA12 |
125.3 |
239.9 |
| CA |
CA1 |
S |
N1 |
316.6 |
51.9 |
| CA |
CA1 |
S |
N2 |
82.9 |
291.9 |
| CA |
CA1 |
S |
CM |
201.8 |
171.8 |
| HA11 |
CA1 |
CA |
HA12 |
250.5 |
119.9 |
| C |
CA |
CA1 |
CB |
104.5 |
120.0 |
| C |
CA |
CA1 |
HA |
233.1 |
240.0 |
| CA1 |
CA |
C |
O |
324.5 |
323.7 |
| CA1 |
CA |
C |
OXT |
143.9 |
143.8 |
| CB |
CA |
CA1 |
HA |
128.6 |
120.0 |
| CA1 |
CA |
CB |
CG |
170.9 |
180.0 |
| CA1 |
CA |
CB |
HB1 |
296.1 |
299.9 |
| CA1 |
CA |
CB |
HB2 |
45.6 |
60.0 |
| CA |
CA1 |
S |
HA11 |
125.2 |
240.0 |
| CA |
CA1 |
S |
HA12 |
234.7 |
120.1 |
| S |
CA1 |
CA |
C |
270.2 |
186.2 |
| S |
CA1 |
CA |
CB |
165.7 |
66.2 |
| S |
CA1 |
CA |
HA |
37.2 |
306.2 |
| HA11 |
CA1 |
S |
HA12 |
109.5 |
240.1 |
| N1 |
S |
CA1 |
N2 |
233.7 |
119.9 |
| N1 |
S |
CA1 |
CM |
114.8 |
240.0 |
| CA1 |
S |
N1 |
HN1 |
265.3 |
58.2 |
| N2 |
S |
CA1 |
CM |
241.1 |
120.1 |
| CA1 |
S |
N2 |
HN2 |
256.3 |
300.0 |
| CA1 |
S |
CM |
HM1 |
180.0 |
180.0 |
| CA1 |
S |
CM |
HM2 |
305.2 |
300.0 |
| CA1 |
S |
CM |
HM3 |
54.8 |
60.1 |
| CA |
CA1 |
HA11 |
S |
237.6 |
120.0 |
| CA |
CA1 |
HA11 |
HA12 |
118.8 |
240.0 |
| HA11 |
CA1 |
CA |
C |
35.4 |
66.2 |
| HA11 |
CA1 |
CA |
CB |
290.9 |
306.2 |
| HA11 |
CA1 |
CA |
HA |
162.4 |
186.2 |
| S |
CA1 |
HA11 |
HA12 |
241.2 |
120.0 |
| HA11 |
CA1 |
S |
N1 |
191.4 |
171.9 |
| HA11 |
CA1 |
S |
N2 |
317.6 |
52.0 |
| HA11 |
CA1 |
S |
CM |
76.5 |
291.8 |
| CA |
CA1 |
HA12 |
S |
122.4 |
239.9 |
| CA |
CA1 |
HA12 |
HA11 |
241.2 |
120.0 |
| HA12 |
CA1 |
CA |
C |
145.0 |
306.3 |
| HA12 |
CA1 |
CA |
CB |
40.5 |
186.3 |
| HA12 |
CA1 |
CA |
HA |
271.9 |
66.2 |
| S |
CA1 |
HA12 |
HA11 |
118.8 |
240.0 |
| HA12 |
CA1 |
S |
N1 |
81.8 |
291.8 |
| HA12 |
CA1 |
S |
N2 |
208.1 |
171.9 |
| HA12 |
CA1 |
S |
CM |
327.0 |
51.8 |
| C |
CA |
CA1 |
S |
270.2 |
186.2 |
| C |
CA |
CA1 |
HA11 |
35.4 |
66.2 |
| C |
CA |
CA1 |
HA12 |
145.0 |
306.3 |
| CA1 |
CA |
C |
CB |
263.0 |
240.0 |
| CA1 |
CA |
C |
HA |
131.6 |
120.0 |
| CB |
CA |
C |
HA |
228.6 |
240.0 |
| C |
CA |
CB |
CG |
67.1 |
60.1 |
| C |
CA |
CB |
HB1 |
192.4 |
179.9 |
| C |
CA |
CB |
HB2 |
301.9 |
300.0 |
| O |
C |
CA |
OXT |
180.7 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
CA1 |
S |
165.7 |
66.2 |
| CB |
CA |
CA1 |
HA11 |
290.9 |
306.2 |
| CB |
CA |
CA1 |
HA12 |
40.5 |
186.3 |
| CA1 |
CA |
CB |
C |
103.7 |
120.0 |
| CA1 |
CA |
CB |
HA |
231.0 |
240.0 |
| C |
CA |
CB |
HA |
127.2 |
120.0 |
| CB |
CA |
C |
O |
61.5 |
83.7 |
| CB |
CA |
C |
OXT |
240.8 |
263.8 |
| CG |
CB |
CA |
HB1 |
234.7 |
240.1 |
| CG |
CB |
CA |
HB2 |
125.2 |
120.1 |
| CA |
CB |
CG |
CD1 |
97.8 |
90.0 |
| CA |
CB |
CG |
CD2 |
277.9 |
269.6 |
| HB1 |
CB |
CA |
HB2 |
250.5 |
240.0 |
| HA |
CA |
CA1 |
S |
37.2 |
306.2 |
| HA |
CA |
CA1 |
HA11 |
162.4 |
186.2 |
| HA |
CA |
CA1 |
HA12 |
271.9 |
66.2 |
| CA1 |
CA |
HA |
C |
238.1 |
240.0 |
| CA1 |
CA |
HA |
CB |
115.6 |
120.0 |
| C |
CA |
HA |
CB |
237.5 |
240.0 |
| HA |
CA |
C |
O |
192.9 |
203.8 |
| HA |
CA |
C |
OXT |
12.3 |
23.8 |
| HA |
CA |
CB |
CG |
299.9 |
300.1 |
| HA |
CA |
CB |
HB1 |
65.2 |
59.9 |
| HA |
CA |
CB |
HB2 |
174.6 |
180.0 |
| O |
C |
CA |
CB |
61.5 |
83.7 |
| O |
C |
CA |
HA |
192.9 |
203.8 |
| CA |
C |
O |
OXT |
179.2 |
180.0 |
| O |
C |
OXT |
HXT |
359.3 |
0.0 |
| OXT |
C |
CA |
CB |
240.8 |
263.8 |
| OXT |
C |
CA |
HA |
12.3 |
23.8 |
| CA |
C |
OXT |
O |
180.8 |
180.0 |
| CG |
CB |
CA |
HA |
299.9 |
300.1 |
| CA |
CB |
CG |
HB1 |
125.2 |
119.9 |
| CA |
CB |
CG |
HB2 |
234.8 |
239.9 |
| HB1 |
CB |
CG |
HB2 |
109.5 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
179.9 |
180.4 |
| CB |
CG |
CD1 |
CE1 |
180.7 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
0.7 |
359.8 |
| CB |
CG |
CD2 |
CE2 |
179.1 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
359.2 |
0.3 |
| HB1 |
CB |
CA |
HA |
65.2 |
59.9 |
| CA |
CB |
HB1 |
CG |
244.3 |
240.1 |
| CA |
CB |
HB1 |
HB2 |
122.1 |
120.1 |
| CG |
CB |
HB1 |
HB2 |
237.9 |
240.0 |
| HB1 |
CB |
CG |
CD1 |
332.6 |
330.1 |
| HB1 |
CB |
CG |
CD2 |
152.6 |
149.7 |
| HB2 |
CB |
CA |
HA |
174.6 |
180.0 |
| CA |
CB |
HB2 |
CG |
115.7 |
120.0 |
| CA |
CB |
HB2 |
HB1 |
237.9 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
122.2 |
119.9 |
| HB2 |
CB |
CG |
CD1 |
223.0 |
210.1 |
| HB2 |
CB |
CG |
CD2 |
43.1 |
29.8 |
| CD1 |
CG |
CB |
HB1 |
332.6 |
330.1 |
| CD1 |
CG |
CB |
HB2 |
223.0 |
210.1 |
| CB |
CG |
CD1 |
CD2 |
180.1 |
179.6 |
| CD1 |
CG |
CD2 |
CE2 |
359.2 |
359.4 |
| CD1 |
CG |
CD2 |
HD2 |
179.3 |
179.9 |
| CE1 |
CD1 |
CG |
HD1 |
180.1 |
180.1 |
| CG |
CD1 |
CE1 |
CZ |
359.4 |
359.9 |
| CG |
CD1 |
CE1 |
HE1 |
179.4 |
179.9 |
| CD2 |
CG |
CB |
HB1 |
152.6 |
149.7 |
| CD2 |
CG |
CB |
HB2 |
43.1 |
29.8 |
| CB |
CG |
CD2 |
CD1 |
179.9 |
180.4 |
| CD2 |
CG |
CD1 |
CE1 |
0.6 |
0.4 |
| CD2 |
CG |
CD1 |
HD1 |
180.6 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
179.9 |
179.5 |
| CG |
CD2 |
CE2 |
CZ |
0.6 |
0.6 |
| CG |
CD2 |
CE2 |
HE2 |
180.7 |
180.3 |
| CE1 |
CD1 |
CG |
CD2 |
0.6 |
0.4 |
| CG |
CD1 |
CE1 |
HD1 |
179.9 |
179.9 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.1 |
| CD1 |
CE1 |
CZ |
CE2 |
0.9 |
0.0 |
| CD1 |
CE1 |
CZ |
HZ |
180.8 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.6 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.1 |
180.1 |
| HD1 |
CD1 |
CE1 |
CZ |
179.4 |
180.1 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.4 |
0.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.1 |
180.5 |
| CE1 |
CZ |
CE2 |
CD2 |
359.2 |
359.7 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
HZ |
179.2 |
179.8 |
| CG |
CD2 |
HD2 |
CE2 |
179.9 |
179.5 |
| HD2 |
CD2 |
CE2 |
CZ |
180.6 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.6 |
359.8 |
| CZ |
CE1 |
CD1 |
HD1 |
179.4 |
180.1 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
179.9 |
| CD2 |
CE2 |
CZ |
CE1 |
359.2 |
359.7 |
| CE1 |
CZ |
CE2 |
HE2 |
179.2 |
180.0 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
180.1 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.4 |
0.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.1 |
| HE1 |
CE1 |
CZ |
CE2 |
180.9 |
180.1 |
| HE1 |
CE1 |
CZ |
HZ |
0.8 |
0.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.6 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.7 |
| CE2 |
CZ |
CE1 |
HE1 |
180.9 |
180.1 |
| CE1 |
CZ |
CE2 |
HZ |
179.9 |
179.9 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.6 |
359.8 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.3 |
| HE2 |
CE2 |
CZ |
HZ |
359.2 |
0.1 |
| HZ |
CZ |
CE1 |
HE1 |
0.8 |
0.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
180.1 |
| HZ |
CZ |
CE2 |
HE2 |
359.2 |
0.1 |
| N1 |
S |
CA1 |
HA11 |
191.4 |
171.9 |
| N1 |
S |
CA1 |
HA12 |
81.8 |
291.8 |
| CA1 |
S |
N1 |
N2 |
123.4 |
240.0 |
| CA1 |
S |
N1 |
CM |
245.3 |
120.0 |
| N2 |
S |
N1 |
CM |
121.9 |
240.0 |
| N1 |
S |
N2 |
HN2 |
16.7 |
180.0 |
| N1 |
S |
CM |
HM1 |
66.8 |
300.0 |
| N1 |
S |
CM |
HM2 |
192.0 |
60.0 |
| N1 |
S |
CM |
HM3 |
301.6 |
180.0 |
| N2 |
S |
CA1 |
HA11 |
317.6 |
52.0 |
| N2 |
S |
CA1 |
HA12 |
208.1 |
171.9 |
| CA1 |
S |
N2 |
N1 |
239.7 |
119.9 |
| CA1 |
S |
N2 |
CM |
118.2 |
239.9 |
| N1 |
S |
N2 |
CM |
238.6 |
119.9 |
| N2 |
S |
N1 |
HN1 |
141.8 |
178.2 |
| N2 |
S |
CM |
HM1 |
300.6 |
59.9 |
| N2 |
S |
CM |
HM2 |
65.8 |
179.9 |
| N2 |
S |
CM |
HM3 |
175.3 |
300.0 |
| CM |
S |
CA1 |
HA11 |
76.5 |
291.8 |
| CM |
S |
CA1 |
HA12 |
327.0 |
51.8 |
| CA1 |
S |
CM |
N1 |
113.2 |
240.0 |
| CA1 |
S |
CM |
N2 |
239.5 |
120.1 |
| N1 |
S |
CM |
N2 |
126.2 |
240.1 |
| CM |
S |
N1 |
HN1 |
19.9 |
298.2 |
| CM |
S |
N2 |
HN2 |
138.1 |
60.1 |
| HM1 |
CM |
S |
HM2 |
234.8 |
240.0 |
| HM1 |
CM |
S |
HM3 |
125.3 |
120.0 |
| HM2 |
CM |
S |
HM3 |
250.4 |
239.9 |
| HN1 |
N1 |
S |
N2 |
141.8 |
178.2 |
| HN1 |
N1 |
S |
CM |
19.9 |
298.2 |
| HN2 |
N2 |
S |
CM |
138.1 |
60.1 |
| S |
CM |
HM1 |
HM2 |
125.2 |
120.0 |
| S |
CM |
HM1 |
HM3 |
234.7 |
240.1 |
| HM2 |
CM |
HM1 |
HM3 |
109.5 |
120.0 |
| S |
CM |
HM2 |
HM1 |
237.8 |
240.0 |
| S |
CM |
HM2 |
HM3 |
118.9 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
241.1 |
240.0 |
| S |
CM |
HM3 |
HM1 |
122.3 |
120.0 |
| S |
CM |
HM3 |
HM2 |
241.1 |
239.9 |
| HM1 |
CM |
HM3 |
HM2 |
118.8 |
120.0 |