PDB Chemical Component CP6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CP6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.396 |
1.325 |
N1 |
C3 |
1.378 |
1.327 |
C2 |
N6 |
1.399 |
1.324 |
C2 |
N14 |
1.403 |
1.383 |
C3 |
C4 |
1.493 |
1.408 |
C3 |
N13 |
1.351 |
1.384 |
C4 |
C5 |
1.498 |
1.392 |
C4 |
C7 |
1.445 |
1.481 |
C5 |
N6 |
1.363 |
1.324 |
C5 |
C15 |
1.505 |
1.507 |
C7 |
C8 |
1.405 |
1.393 |
C7 |
C12 |
1.464 |
1.394 |
C8 |
C9 |
1.414 |
1.380 |
C8 |
H8 |
1.102 |
1.080 |
C9 |
C10 |
1.448 |
1.383 |
C9 |
H9 |
1.102 |
1.080 |
C10 |
C11 |
1.391 |
1.384 |
C10 |
CL1 |
1.662 |
1.735 |
C11 |
C12 |
1.428 |
1.380 |
C11 |
H11 |
1.103 |
1.080 |
C12 |
H12 |
1.104 |
1.080 |
N13 |
H131 |
1.020 |
0.969 |
N13 |
H132 |
1.019 |
0.970 |
N14 |
H141 |
1.021 |
0.970 |
N14 |
H142 |
1.021 |
0.969 |
C15 |
C16 |
1.513 |
1.529 |
C15 |
H151 |
1.115 |
1.090 |
C15 |
H152 |
1.115 |
1.090 |
C16 |
H161 |
1.115 |
1.091 |
C16 |
H162 |
1.116 |
1.091 |
C16 |
H163 |
1.115 |
1.090 |
Bond Angles for CP6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C3 |
119.4 |
120.7 |
N1 |
C2 |
N6 |
124.3 |
121.9 |
N1 |
C2 |
N14 |
118.3 |
119.0 |
N1 |
C3 |
C4 |
120.8 |
118.9 |
N1 |
C3 |
N13 |
121.0 |
120.6 |
N6 |
C2 |
N14 |
117.3 |
119.1 |
C2 |
N6 |
C5 |
118.2 |
121.1 |
C2 |
N14 |
H141 |
118.4 |
120.0 |
C2 |
N14 |
H142 |
109.0 |
120.0 |
C4 |
C3 |
N13 |
118.1 |
120.5 |
C3 |
C4 |
C5 |
114.6 |
118.2 |
C3 |
C4 |
C7 |
123.8 |
120.9 |
C3 |
N13 |
H131 |
120.9 |
119.9 |
C3 |
N13 |
H132 |
108.1 |
120.0 |
C5 |
C4 |
C7 |
121.5 |
120.9 |
C4 |
C5 |
N6 |
122.5 |
119.1 |
C4 |
C5 |
C15 |
118.0 |
120.4 |
C4 |
C7 |
C8 |
123.5 |
120.2 |
C4 |
C7 |
C12 |
120.3 |
120.1 |
N6 |
C5 |
C15 |
119.4 |
120.4 |
C5 |
C15 |
C16 |
119.7 |
109.5 |
C5 |
C15 |
H151 |
108.6 |
109.4 |
C5 |
C15 |
H152 |
108.6 |
109.5 |
C8 |
C7 |
C12 |
116.3 |
119.7 |
C7 |
C8 |
C9 |
121.9 |
119.9 |
C7 |
C8 |
H8 |
118.7 |
120.0 |
C7 |
C12 |
C11 |
122.8 |
119.9 |
C7 |
C12 |
H12 |
119.9 |
120.0 |
C9 |
C8 |
H8 |
119.5 |
120.0 |
C8 |
C9 |
C10 |
120.3 |
120.1 |
C8 |
C9 |
H9 |
118.7 |
119.9 |
C10 |
C9 |
H9 |
121.0 |
119.9 |
C9 |
C10 |
C11 |
120.2 |
120.2 |
C9 |
C10 |
CL1 |
115.4 |
119.9 |
C11 |
C10 |
CL1 |
124.4 |
119.9 |
C10 |
C11 |
C12 |
118.5 |
120.1 |
C10 |
C11 |
H11 |
119.5 |
119.9 |
C12 |
C11 |
H11 |
121.9 |
119.9 |
C11 |
C12 |
H12 |
117.3 |
120.1 |
H131 |
N13 |
H132 |
108.1 |
120.0 |
H141 |
N14 |
H142 |
108.9 |
120.0 |
C16 |
C15 |
H151 |
108.5 |
109.5 |
C16 |
C15 |
H152 |
108.5 |
109.5 |
C15 |
C16 |
H161 |
119.7 |
109.5 |
C15 |
C16 |
H162 |
108.6 |
109.5 |
C15 |
C16 |
H163 |
108.6 |
109.5 |
H151 |
C15 |
H152 |
101.5 |
109.5 |
H161 |
C16 |
H162 |
108.5 |
109.4 |
H161 |
C16 |
H163 |
108.6 |
109.5 |
H162 |
C16 |
H163 |
101.4 |
109.5 |
Torsion Angles for CP6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C3 |
C4 |
4.2 |
359.8 |
C2 |
N1 |
C3 |
N13 |
180.1 |
180.1 |
N6 |
C2 |
N1 |
N14 |
177.0 |
180.0 |
N1 |
C2 |
N6 |
C5 |
3.1 |
0.0 |
N1 |
C2 |
N14 |
H141 |
180.0 |
0.0 |
N1 |
C2 |
N14 |
H142 |
54.8 |
180.0 |
C3 |
N1 |
C2 |
N6 |
356.8 |
360.0 |
C3 |
N1 |
C2 |
N14 |
179.8 |
180.0 |
C4 |
C3 |
N1 |
N13 |
184.1 |
179.7 |
N1 |
C3 |
C4 |
C5 |
355.1 |
0.5 |
N1 |
C3 |
C4 |
C7 |
178.9 |
180.0 |
N1 |
C3 |
N13 |
H131 |
180.0 |
359.9 |
N1 |
C3 |
N13 |
H132 |
54.7 |
180.0 |
N6 |
C2 |
N1 |
C3 |
356.8 |
360.0 |
N1 |
C2 |
N6 |
N14 |
183.0 |
180.0 |
N6 |
C2 |
N14 |
H141 |
2.8 |
180.0 |
N6 |
C2 |
N14 |
H142 |
237.6 |
360.0 |
C4 |
C5 |
N6 |
C2 |
355.9 |
0.3 |
C2 |
N6 |
C5 |
C15 |
179.9 |
180.0 |
N14 |
C2 |
N1 |
C3 |
179.8 |
180.0 |
N1 |
C2 |
N14 |
N6 |
177.2 |
180.0 |
N14 |
C2 |
N6 |
C5 |
180.1 |
180.0 |
H141 |
N14 |
C2 |
H142 |
125.2 |
180.1 |
N1 |
C3 |
C4 |
N13 |
176.0 |
180.3 |
C4 |
C3 |
N13 |
H131 |
356.0 |
180.3 |
C4 |
C3 |
N13 |
H132 |
230.7 |
0.4 |
C5 |
C4 |
C3 |
C7 |
176.2 |
180.5 |
C3 |
C4 |
C5 |
N6 |
5.0 |
359.5 |
C3 |
C4 |
C5 |
C15 |
181.0 |
179.8 |
C3 |
C4 |
C7 |
C8 |
92.2 |
68.6 |
C3 |
C4 |
C7 |
C12 |
272.5 |
248.4 |
N1 |
C3 |
N13 |
C4 |
184.0 |
179.7 |
N13 |
C3 |
C4 |
C5 |
179.0 |
180.2 |
N13 |
C3 |
C4 |
C7 |
2.8 |
359.7 |
H131 |
N13 |
C3 |
H132 |
125.3 |
179.9 |
C2 |
N6 |
C5 |
C4 |
355.9 |
0.3 |
C5 |
C4 |
C3 |
N13 |
179.0 |
180.2 |
C3 |
C4 |
C5 |
C7 |
183.7 |
179.5 |
C5 |
C4 |
C7 |
C8 |
276.3 |
248.1 |
C5 |
C4 |
C7 |
C12 |
96.5 |
67.9 |
N6 |
C5 |
C4 |
C15 |
184.0 |
179.7 |
C4 |
C5 |
C15 |
C16 |
242.0 |
93.1 |
C4 |
C5 |
C15 |
H151 |
7.2 |
333.1 |
C4 |
C5 |
C15 |
H152 |
116.7 |
213.1 |
C7 |
C4 |
C3 |
N13 |
2.8 |
359.7 |
C3 |
C4 |
C7 |
C5 |
175.9 |
180.5 |
C7 |
C4 |
C5 |
N6 |
181.3 |
180.0 |
C7 |
C4 |
C5 |
C15 |
357.3 |
0.3 |
C8 |
C7 |
C4 |
C12 |
179.7 |
180.2 |
C4 |
C7 |
C8 |
C9 |
180.5 |
180.0 |
C4 |
C7 |
C8 |
H8 |
0.5 |
360.0 |
C4 |
C7 |
C12 |
C11 |
179.0 |
179.8 |
C4 |
C7 |
C12 |
H12 |
359.0 |
0.2 |
C5 |
N6 |
C2 |
N14 |
180.1 |
180.0 |
N6 |
C5 |
C4 |
C7 |
181.3 |
180.0 |
C4 |
C5 |
N6 |
C15 |
176.0 |
180.3 |
N6 |
C5 |
C15 |
C16 |
58.1 |
273.4 |
N6 |
C5 |
C15 |
H151 |
183.3 |
153.4 |
N6 |
C5 |
C15 |
H152 |
292.9 |
33.4 |
C15 |
C5 |
C4 |
C7 |
357.3 |
0.3 |
C4 |
C5 |
C15 |
N6 |
183.9 |
179.7 |
C16 |
C15 |
C5 |
H151 |
234.8 |
120.0 |
C16 |
C15 |
C5 |
H152 |
125.2 |
240.0 |
C5 |
C15 |
C16 |
H161 |
180.0 |
175.3 |
C5 |
C15 |
C16 |
H162 |
305.3 |
295.3 |
C5 |
C15 |
C16 |
H163 |
54.7 |
55.3 |
H151 |
C15 |
C5 |
H152 |
250.5 |
120.0 |
C4 |
C7 |
C8 |
C12 |
180.3 |
179.8 |
C8 |
C7 |
C12 |
C11 |
359.3 |
359.6 |
C8 |
C7 |
C12 |
H12 |
179.2 |
180.0 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
C10 |
0.6 |
0.0 |
C7 |
C8 |
C9 |
H9 |
180.6 |
180.0 |
C4 |
C7 |
C12 |
C8 |
179.8 |
180.2 |
C12 |
C7 |
C8 |
C9 |
0.3 |
0.2 |
C12 |
C7 |
C8 |
H8 |
180.3 |
180.2 |
C10 |
C11 |
C12 |
C7 |
0.3 |
0.5 |
C7 |
C12 |
C11 |
H11 |
180.3 |
180.3 |
C11 |
C12 |
C7 |
H12 |
180.0 |
179.6 |
C9 |
C8 |
C7 |
C12 |
0.3 |
0.2 |
C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
C11 |
359.0 |
0.0 |
C8 |
C9 |
C10 |
CL1 |
179.2 |
180.0 |
H8 |
C8 |
C7 |
C12 |
180.3 |
180.2 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
H8 |
C8 |
C9 |
C10 |
180.6 |
180.0 |
H8 |
C8 |
C9 |
H9 |
0.6 |
360.0 |
C10 |
C9 |
C8 |
H8 |
180.6 |
180.0 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
CL1 |
179.7 |
180.0 |
C9 |
C10 |
C11 |
C12 |
0.6 |
359.7 |
C9 |
C10 |
C11 |
H11 |
180.6 |
179.9 |
H9 |
C9 |
C8 |
H8 |
0.6 |
360.0 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C10 |
C11 |
179.0 |
180.1 |
H9 |
C9 |
C10 |
CL1 |
359.2 |
0.1 |
C7 |
C12 |
C11 |
C10 |
0.3 |
0.5 |
C11 |
C10 |
C9 |
H9 |
179.0 |
180.1 |
C9 |
C10 |
C11 |
CL1 |
180.3 |
180.0 |
C12 |
C11 |
C10 |
H11 |
180.0 |
179.8 |
C10 |
C11 |
C12 |
H12 |
180.3 |
180.0 |
CL1 |
C10 |
C9 |
H9 |
359.2 |
0.1 |
C9 |
C10 |
CL1 |
C11 |
179.7 |
180.0 |
CL1 |
C10 |
C11 |
C12 |
180.3 |
179.7 |
CL1 |
C10 |
C11 |
H11 |
0.3 |
360.0 |
C7 |
C12 |
C11 |
H12 |
180.0 |
180.4 |
C12 |
C11 |
C10 |
CL1 |
180.3 |
179.7 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.2 |
H11 |
C11 |
C10 |
CL1 |
0.3 |
360.0 |
C10 |
C11 |
H11 |
C12 |
180.0 |
179.8 |
H11 |
C11 |
C12 |
H12 |
0.3 |
359.8 |
C7 |
C12 |
H12 |
C11 |
180.0 |
179.6 |
H12 |
C12 |
C11 |
H11 |
0.3 |
359.8 |
C3 |
N13 |
H131 |
H132 |
234.7 |
180.1 |
C3 |
N13 |
H132 |
H131 |
132.6 |
179.9 |
C2 |
N14 |
H141 |
H142 |
234.8 |
179.9 |
C2 |
N14 |
H142 |
H141 |
130.5 |
180.1 |
C5 |
C15 |
C16 |
H151 |
125.3 |
240.0 |
C5 |
C15 |
C16 |
H152 |
234.7 |
120.0 |
H151 |
C15 |
C16 |
H152 |
109.5 |
240.0 |
H161 |
C16 |
C15 |
H162 |
234.7 |
240.1 |
H161 |
C16 |
C15 |
H163 |
125.3 |
120.0 |
H162 |
C16 |
C15 |
H163 |
250.6 |
240.0 |
C5 |
C15 |
H151 |
C16 |
228.5 |
120.0 |
C5 |
C15 |
H151 |
H152 |
114.3 |
240.0 |
C16 |
C15 |
H151 |
H152 |
245.8 |
120.0 |
H151 |
C15 |
C16 |
H161 |
54.8 |
295.3 |
H151 |
C15 |
C16 |
H162 |
180.1 |
55.2 |
H151 |
C15 |
C16 |
H163 |
289.5 |
175.3 |
C5 |
C15 |
H152 |
C16 |
131.5 |
240.0 |
C5 |
C15 |
H152 |
H151 |
245.7 |
120.0 |
C16 |
C15 |
H152 |
H151 |
114.2 |
240.0 |
H152 |
C15 |
C16 |
H161 |
305.3 |
55.3 |
H152 |
C15 |
C16 |
H162 |
70.6 |
175.2 |
H152 |
C15 |
C16 |
H163 |
180.0 |
295.3 |
H161 |
C16 |
C15 |
H151 |
54.8 |
295.3 |
H161 |
C16 |
C15 |
H152 |
305.3 |
55.3 |
C15 |
C16 |
H161 |
H162 |
125.3 |
120.0 |
C15 |
C16 |
H161 |
H163 |
234.7 |
239.9 |
H162 |
C16 |
H161 |
H163 |
109.4 |
120.0 |
H162 |
C16 |
C15 |
H151 |
180.1 |
55.2 |
H162 |
C16 |
C15 |
H152 |
70.6 |
175.2 |
C15 |
C16 |
H162 |
H161 |
228.4 |
240.0 |
C15 |
C16 |
H162 |
H163 |
114.2 |
120.1 |
H161 |
C16 |
H162 |
H163 |
245.8 |
240.0 |
H163 |
C16 |
C15 |
H151 |
289.5 |
175.3 |
H163 |
C16 |
C15 |
H152 |
180.0 |
295.3 |
C15 |
C16 |
H163 |
H161 |
131.6 |
120.0 |
C15 |
C16 |
H163 |
H162 |
245.8 |
239.9 |
H161 |
C16 |
H163 |
H162 |
114.2 |
119.9 |