PDB Chemical Component COX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for COX
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S1 |
O1 |
1.579 |
1.420 |
S1 |
O2 |
1.572 |
1.422 |
S1 |
N1 |
1.701 |
1.656 |
S1 |
C1 |
1.747 |
1.762 |
N1 |
HN11 |
1.000 |
0.970 |
N1 |
HN12 |
1.000 |
0.970 |
C1 |
C2 |
1.422 |
1.383 |
C1 |
C6 |
1.416 |
1.383 |
C2 |
C3 |
1.416 |
1.380 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
C4 |
1.449 |
1.393 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
C5 |
1.442 |
1.394 |
C4 |
C7 |
1.452 |
1.483 |
C5 |
C6 |
1.416 |
1.380 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C7 |
C8 |
1.433 |
1.366 |
C7 |
C10 |
1.450 |
1.475 |
C8 |
C9 |
1.521 |
1.507 |
C8 |
O3 |
1.377 |
1.339 |
C9 |
H91 |
1.100 |
1.089 |
C9 |
H92 |
1.100 |
1.090 |
C9 |
H93 |
1.100 |
1.090 |
O3 |
N2 |
1.303 |
1.207 |
N2 |
C10 |
1.380 |
1.309 |
C10 |
C11 |
1.446 |
1.484 |
C11 |
C12 |
1.436 |
1.394 |
C11 |
C16 |
1.444 |
1.393 |
C12 |
C13 |
1.415 |
1.380 |
C12 |
H12 |
1.080 |
1.080 |
C13 |
C14 |
1.417 |
1.383 |
C13 |
H13 |
1.080 |
1.081 |
C14 |
C15 |
1.417 |
1.384 |
C14 |
H14 |
1.080 |
1.080 |
C15 |
C16 |
1.415 |
1.380 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
Bond Angles for COX
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
S1 |
O2 |
118.2 |
125.4 |
O1 |
S1 |
N1 |
109.2 |
105.8 |
O1 |
S1 |
C1 |
107.0 |
105.8 |
O2 |
S1 |
N1 |
108.0 |
105.8 |
O2 |
S1 |
C1 |
105.0 |
105.7 |
N1 |
S1 |
C1 |
109.2 |
107.4 |
S1 |
N1 |
HN11 |
109.5 |
120.0 |
S1 |
N1 |
HN12 |
109.5 |
120.0 |
S1 |
C1 |
C2 |
119.4 |
119.9 |
S1 |
C1 |
C6 |
119.4 |
119.9 |
HN11 |
N1 |
HN12 |
109.5 |
120.0 |
C2 |
C1 |
C6 |
121.2 |
120.3 |
C1 |
C2 |
C3 |
118.8 |
120.1 |
C1 |
C2 |
H2 |
120.6 |
119.9 |
C1 |
C6 |
C5 |
119.5 |
120.1 |
C1 |
C6 |
H6 |
120.3 |
119.9 |
C3 |
C2 |
H2 |
120.6 |
120.0 |
C2 |
C3 |
C4 |
122.0 |
119.9 |
C2 |
C3 |
H3 |
119.0 |
120.0 |
C4 |
C3 |
H3 |
119.0 |
120.0 |
C3 |
C4 |
C5 |
116.7 |
119.7 |
C3 |
C4 |
C7 |
121.3 |
120.2 |
C5 |
C4 |
C7 |
122.0 |
120.1 |
C4 |
C5 |
C6 |
121.7 |
119.9 |
C4 |
C5 |
H5 |
119.1 |
120.1 |
C4 |
C7 |
C8 |
127.5 |
128.5 |
C4 |
C7 |
C10 |
129.0 |
128.5 |
C6 |
C5 |
H5 |
119.2 |
120.0 |
C5 |
C6 |
H6 |
120.3 |
120.0 |
C8 |
C7 |
C10 |
103.5 |
103.0 |
C7 |
C8 |
C9 |
132.2 |
126.7 |
C7 |
C8 |
O3 |
110.2 |
106.6 |
C7 |
C10 |
N2 |
105.5 |
105.2 |
C7 |
C10 |
C11 |
132.0 |
127.4 |
C9 |
C8 |
O3 |
117.6 |
126.7 |
C8 |
C9 |
H91 |
109.4 |
109.5 |
C8 |
C9 |
H92 |
109.5 |
109.5 |
C8 |
C9 |
H93 |
109.5 |
109.5 |
C8 |
O3 |
N2 |
107.0 |
113.2 |
H91 |
C9 |
H92 |
109.5 |
109.5 |
H91 |
C9 |
H93 |
109.5 |
109.5 |
H92 |
C9 |
H93 |
109.5 |
109.4 |
O3 |
N2 |
C10 |
113.9 |
111.9 |
N2 |
C10 |
C11 |
122.5 |
127.4 |
C10 |
C11 |
C12 |
120.6 |
120.1 |
C10 |
C11 |
C16 |
122.1 |
120.1 |
C12 |
C11 |
C16 |
117.3 |
119.7 |
C11 |
C12 |
C13 |
121.5 |
119.9 |
C11 |
C12 |
H12 |
119.2 |
120.1 |
C11 |
C16 |
C15 |
121.2 |
119.9 |
C11 |
C16 |
H16 |
119.4 |
120.1 |
C13 |
C12 |
H12 |
119.2 |
120.1 |
C12 |
C13 |
C14 |
119.7 |
120.1 |
C12 |
C13 |
H13 |
120.2 |
119.9 |
C14 |
C13 |
H13 |
120.1 |
120.0 |
C13 |
C14 |
C15 |
120.4 |
120.2 |
C13 |
C14 |
H14 |
119.8 |
119.9 |
C15 |
C14 |
H14 |
119.8 |
119.8 |
C14 |
C15 |
C16 |
119.9 |
120.1 |
C14 |
C15 |
H15 |
120.1 |
119.9 |
C16 |
C15 |
H15 |
120.0 |
120.0 |
C15 |
C16 |
H16 |
119.4 |
120.0 |
Torsion Angles for COX
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
S1 |
O1 |
N1 |
236.1 |
236.9 |
O2 |
S1 |
O1 |
C1 |
118.1 |
123.1 |
N1 |
S1 |
O1 |
C1 |
242.0 |
246.2 |
O1 |
S1 |
N1 |
HN11 |
201.2 |
262.6 |
O1 |
S1 |
N1 |
HN12 |
81.2 |
82.5 |
O1 |
S1 |
C1 |
C2 |
1.2 |
157.4 |
O1 |
S1 |
C1 |
C6 |
180.2 |
337.4 |
O1 |
S1 |
O2 |
N1 |
124.5 |
123.1 |
O1 |
S1 |
O2 |
C1 |
240.9 |
236.9 |
N1 |
S1 |
O2 |
C1 |
116.4 |
113.7 |
O2 |
S1 |
N1 |
HN11 |
330.9 |
37.4 |
O2 |
S1 |
N1 |
HN12 |
210.9 |
217.3 |
O2 |
S1 |
C1 |
C2 |
234.9 |
22.6 |
O2 |
S1 |
C1 |
C6 |
53.9 |
202.6 |
O1 |
S1 |
N1 |
O2 |
230.3 |
225.2 |
O1 |
S1 |
N1 |
C1 |
116.6 |
112.6 |
O2 |
S1 |
N1 |
C1 |
246.4 |
247.4 |
N1 |
S1 |
C1 |
C2 |
119.3 |
270.0 |
N1 |
S1 |
C1 |
C6 |
298.3 |
90.1 |
HN11 |
N1 |
S1 |
HN12 |
120.0 |
180.1 |
O1 |
S1 |
C1 |
O2 |
126.4 |
134.8 |
O1 |
S1 |
C1 |
N1 |
241.9 |
247.4 |
O2 |
S1 |
C1 |
N1 |
115.6 |
112.6 |
C1 |
S1 |
N1 |
HN11 |
84.5 |
150.0 |
C1 |
S1 |
N1 |
HN12 |
324.5 |
329.9 |
C2 |
C1 |
S1 |
C6 |
181.0 |
180.0 |
S1 |
C1 |
C2 |
C3 |
178.9 |
179.8 |
S1 |
C1 |
C2 |
H2 |
358.9 |
359.9 |
S1 |
C1 |
C6 |
C5 |
181.3 |
180.0 |
S1 |
C1 |
C6 |
H6 |
1.3 |
359.9 |
HN11 |
N1 |
S1 |
C1 |
84.5 |
150.0 |
S1 |
N1 |
HN11 |
HN12 |
240.0 |
179.9 |
HN12 |
N1 |
S1 |
C1 |
324.5 |
329.9 |
S1 |
N1 |
HN12 |
HN11 |
120.0 |
180.1 |
S1 |
C1 |
C2 |
C6 |
179.0 |
180.0 |
C2 |
C1 |
C6 |
C5 |
0.3 |
0.0 |
C2 |
C1 |
C6 |
H6 |
180.3 |
179.9 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.8 |
C1 |
C2 |
C3 |
C4 |
359.8 |
0.5 |
C1 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
S1 |
C1 |
C6 |
C2 |
181.0 |
180.0 |
C6 |
C1 |
C2 |
C3 |
359.9 |
359.7 |
C6 |
C1 |
C2 |
H2 |
179.9 |
179.9 |
C4 |
C5 |
C6 |
C1 |
359.8 |
359.9 |
C1 |
C6 |
C5 |
H5 |
179.8 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.1 |
C3 |
C2 |
C1 |
C6 |
359.9 |
359.7 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.2 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.5 |
C2 |
C3 |
C4 |
C5 |
0.3 |
359.4 |
C2 |
C3 |
C4 |
C7 |
181.0 |
179.7 |
H2 |
C2 |
C1 |
C6 |
179.9 |
179.9 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.8 |
H2 |
C2 |
C3 |
C4 |
179.8 |
180.4 |
H2 |
C2 |
C3 |
H3 |
359.9 |
359.8 |
C4 |
C3 |
C2 |
H2 |
179.8 |
180.4 |
C2 |
C3 |
C4 |
H3 |
180.0 |
179.5 |
C5 |
C4 |
C3 |
C7 |
179.3 |
179.7 |
C3 |
C4 |
C5 |
C6 |
360.0 |
0.3 |
C3 |
C4 |
C5 |
H5 |
179.9 |
180.2 |
C3 |
C4 |
C7 |
C8 |
219.2 |
114.2 |
C3 |
C4 |
C7 |
C10 |
40.2 |
294.8 |
H3 |
C3 |
C2 |
H2 |
359.9 |
359.8 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.5 |
H3 |
C3 |
C4 |
C5 |
180.2 |
180.0 |
H3 |
C3 |
C4 |
C7 |
0.9 |
0.3 |
C1 |
C6 |
C5 |
C4 |
359.8 |
359.9 |
C5 |
C4 |
C3 |
H3 |
180.2 |
180.0 |
C3 |
C4 |
C5 |
C7 |
180.7 |
180.3 |
C5 |
C4 |
C7 |
C8 |
40.0 |
294.5 |
C5 |
C4 |
C7 |
C10 |
220.9 |
115.1 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
H6 |
179.8 |
180.0 |
C7 |
C4 |
C3 |
H3 |
0.9 |
0.3 |
C3 |
C4 |
C7 |
C5 |
179.2 |
179.7 |
C7 |
C4 |
C5 |
C6 |
179.2 |
180.1 |
C7 |
C4 |
C5 |
H5 |
359.2 |
360.0 |
C8 |
C7 |
C4 |
C10 |
179.0 |
179.5 |
C4 |
C7 |
C8 |
C9 |
0.8 |
0.3 |
C4 |
C7 |
C8 |
O3 |
181.4 |
180.0 |
C4 |
C7 |
C10 |
N2 |
178.7 |
180.0 |
C4 |
C7 |
C10 |
C11 |
356.3 |
359.7 |
C1 |
C6 |
C5 |
H6 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
C7 |
179.2 |
180.1 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
H5 |
C5 |
C4 |
C7 |
359.2 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
H6 |
359.8 |
0.1 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.1 |
H6 |
C6 |
C5 |
H5 |
359.8 |
0.1 |
C4 |
C7 |
C8 |
C10 |
180.8 |
180.4 |
C8 |
C7 |
C10 |
N2 |
359.5 |
0.4 |
C8 |
C7 |
C10 |
C11 |
177.1 |
180.1 |
C9 |
C8 |
C7 |
O3 |
179.4 |
180.3 |
C7 |
C8 |
C9 |
H91 |
14.5 |
179.7 |
C7 |
C8 |
C9 |
H92 |
254.5 |
299.7 |
C7 |
C8 |
C9 |
H93 |
134.5 |
59.7 |
C7 |
C8 |
O3 |
N2 |
359.6 |
0.3 |
C4 |
C7 |
C10 |
C8 |
179.2 |
179.6 |
C10 |
C7 |
C8 |
C9 |
180.0 |
179.9 |
C10 |
C7 |
C8 |
O3 |
0.6 |
359.6 |
O3 |
N2 |
C10 |
C7 |
0.3 |
359.7 |
N2 |
C10 |
C7 |
C11 |
182.3 |
180.3 |
C7 |
C10 |
C11 |
C12 |
243.6 |
140.4 |
C7 |
C10 |
C11 |
C16 |
63.3 |
320.1 |
C9 |
C8 |
C7 |
C10 |
180.0 |
179.9 |
C7 |
C8 |
C9 |
O3 |
180.7 |
179.7 |
C9 |
C8 |
O3 |
N2 |
180.1 |
180.0 |
H91 |
C9 |
C8 |
H92 |
120.0 |
240.0 |
H91 |
C9 |
C8 |
H93 |
240.0 |
120.1 |
H92 |
C9 |
C8 |
H93 |
120.0 |
240.1 |
O3 |
C8 |
C7 |
C10 |
0.6 |
359.6 |
C7 |
C8 |
O3 |
C9 |
179.5 |
180.3 |
O3 |
C8 |
C9 |
H91 |
193.9 |
0.0 |
O3 |
C8 |
C9 |
H92 |
73.9 |
120.0 |
O3 |
C8 |
C9 |
H93 |
313.8 |
240.0 |
C8 |
O3 |
N2 |
C10 |
0.1 |
0.0 |
H91 |
C9 |
C8 |
O3 |
193.9 |
0.0 |
C8 |
C9 |
H91 |
H92 |
240.0 |
120.0 |
C8 |
C9 |
H91 |
H93 |
120.0 |
240.0 |
H92 |
C9 |
H91 |
H93 |
240.0 |
120.0 |
H92 |
C9 |
C8 |
O3 |
73.9 |
120.0 |
C8 |
C9 |
H92 |
H91 |
120.0 |
240.0 |
C8 |
C9 |
H92 |
H93 |
240.0 |
120.0 |
H91 |
C9 |
H92 |
H93 |
120.0 |
240.0 |
H93 |
C9 |
C8 |
O3 |
313.8 |
240.0 |
C8 |
C9 |
H93 |
H91 |
240.0 |
120.1 |
C8 |
C9 |
H93 |
H92 |
120.0 |
240.0 |
H91 |
C9 |
H93 |
H92 |
240.0 |
120.0 |
C7 |
C10 |
N2 |
O3 |
0.3 |
359.7 |
O3 |
N2 |
C10 |
C11 |
182.4 |
180.0 |
C7 |
C10 |
N2 |
C11 |
177.9 |
179.7 |
N2 |
C10 |
C11 |
C12 |
60.9 |
320.0 |
N2 |
C10 |
C11 |
C16 |
240.6 |
139.7 |
C7 |
C10 |
C11 |
N2 |
182.7 |
180.4 |
C12 |
C11 |
C10 |
C16 |
180.3 |
180.3 |
C10 |
C11 |
C12 |
C13 |
179.7 |
180.0 |
C10 |
C11 |
C12 |
H12 |
359.6 |
360.0 |
C10 |
C11 |
C16 |
C15 |
180.3 |
179.7 |
C10 |
C11 |
C16 |
H16 |
0.3 |
0.3 |
C10 |
C11 |
C12 |
C16 |
179.7 |
179.7 |
C12 |
C11 |
C16 |
C15 |
0.0 |
359.4 |
C12 |
C11 |
C16 |
H16 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C11 |
C12 |
C13 |
C14 |
359.9 |
360.0 |
C11 |
C12 |
C13 |
H13 |
179.9 |
180.0 |
C10 |
C11 |
C16 |
C12 |
180.3 |
180.3 |
C16 |
C11 |
C12 |
C13 |
360.0 |
0.3 |
C16 |
C11 |
C12 |
H12 |
180.0 |
180.3 |
C14 |
C15 |
C16 |
C11 |
0.1 |
0.6 |
C11 |
C16 |
C15 |
H15 |
180.1 |
180.3 |
C15 |
C16 |
C11 |
H16 |
180.0 |
179.4 |
C13 |
C12 |
C11 |
C16 |
360.0 |
0.3 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
C15 |
0.2 |
0.0 |
C12 |
C13 |
C14 |
H14 |
180.1 |
180.0 |
H12 |
C12 |
C11 |
C16 |
180.0 |
180.3 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
H12 |
C12 |
C13 |
C14 |
180.0 |
180.0 |
H12 |
C12 |
C13 |
H13 |
359.9 |
0.0 |
C14 |
C13 |
C12 |
H12 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
C13 |
C14 |
C15 |
C16 |
359.8 |
359.7 |
C13 |
C14 |
C15 |
H15 |
179.8 |
179.9 |
H13 |
C13 |
C12 |
H12 |
359.9 |
0.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
180.0 |
H13 |
C13 |
C14 |
C15 |
180.2 |
180.0 |
H13 |
C13 |
C14 |
H14 |
0.2 |
359.9 |
C11 |
C16 |
C15 |
C14 |
0.1 |
0.6 |
C15 |
C14 |
C13 |
H13 |
180.2 |
180.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
C16 |
C15 |
C14 |
H15 |
180.0 |
179.7 |
C14 |
C15 |
C16 |
H16 |
180.1 |
180.0 |
H14 |
C14 |
C13 |
H13 |
0.2 |
359.9 |
C13 |
C14 |
H14 |
C15 |
180.0 |
180.1 |
H14 |
C14 |
C15 |
C16 |
179.9 |
179.7 |
H14 |
C14 |
C15 |
H15 |
359.8 |
0.0 |
C11 |
C16 |
C15 |
H16 |
180.0 |
180.6 |
C16 |
C15 |
C14 |
H14 |
179.9 |
179.7 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.3 |
H15 |
C15 |
C14 |
H14 |
359.8 |
0.0 |
C14 |
C15 |
H15 |
C16 |
180.0 |
179.7 |
H15 |
C15 |
C16 |
H16 |
0.1 |
359.7 |
C11 |
C16 |
H16 |
C15 |
180.0 |
179.4 |
H16 |
C16 |
C15 |
H15 |
0.1 |
359.7 |