PDB Chemical Component COQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for COQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2B N1' 1.355 1.319
C2B N2' 1.355 1.382
C2B N3' 1.348 1.330
C4B C4A 1.412 1.417
C4B N3' 1.352 1.324
C4B N4' 1.360 1.378
C4A C5B 1.428 1.400
C4A C8A 1.409 1.415
C5B C6B 1.412 1.385
C5B H5' 1.103 1.081
C6B C7' 1.416 1.395
C6B N9' 1.380 1.398
C7' N8' 1.391 1.313
C7' H7' 1.103 1.080
C8A N1' 1.362 1.341
C8A N8' 1.372 1.333
C9' C1' 1.540 1.507
C9' N9' 1.461 1.465
C9' H9'1 1.115 1.090
C9' H9'2 1.115 1.090
C1' C2' 1.408 1.380
C1' C6' 1.424 1.381
C2' C3' 1.413 1.388
C2' H2' 1.103 1.081
C3' C4' 1.400 1.386
C3' O3' 1.408 1.358
C4' C5' 1.377 1.386
C4' H4' 1.103 1.080
C5' C6' 1.384 1.387
C5' O5' 1.412 1.359
C6' H6' 1.103 1.081
C31 O3' 1.427 1.428
C31 H311 1.115 1.090
C31 H312 1.115 1.090
C31 H313 1.116 1.090
C51 O5' 1.467 1.429
C51 H511 1.115 1.090
C51 H512 1.116 1.090
C51 H513 1.115 1.090
CN' N9' 1.461 1.465
CN' HCN1 1.115 1.090
CN' HCN2 1.115 1.090
CN' HCN3 1.115 1.089
N2' HN21 1.020 0.970
N2' HN22 1.020 0.970
N4' HN41 1.020 0.970
N4' HN42 1.020 0.970

Bond Angles for COQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1' C2B N2' 128.6 118.6
N1' C2B N3' 117.3 122.8
C2B N1' C8A 121.0 120.6
N2' C2B N3' 113.9 118.6
C2B N2' HN21 105.5 120.0
C2B N2' HN22 128.6 120.0
C2B N3' C4B 125.9 121.3
C4A C4B N3' 117.0 118.3
C4A C4B N4' 129.5 120.8
C4B C4A C5B 122.6 122.0
C4B C4A C8A 117.4 118.6
N3' C4B N4' 113.4 120.8
C4B N4' HN41 105.2 120.0
C4B N4' HN42 129.5 120.1
C5B C4A C8A 120.0 119.4
C4A C5B C6B 120.0 117.9
C4A C5B H5' 120.5 121.1
C4A C8A N1' 121.2 118.5
C4A C8A N8' 120.7 120.0
C6B C5B H5' 119.4 121.0
C5B C6B C7' 116.6 119.5
C5B C6B N9' 121.2 120.2
C7' C6B N9' 122.0 120.2
C6B C7' N8' 123.7 121.7
C6B C7' H7' 119.1 119.2
C6B N9' C9' 112.9 120.0
C6B N9' CN' 127.5 120.0
N8' C7' H7' 117.2 119.1
C7' N8' C8A 118.8 121.5
N1' C8A N8' 118.1 121.6
C1' C9' N9' 114.6 109.5
C1' C9' H9'1 110.3 109.5
C1' C9' H9'2 110.4 109.5
C9' C1' C2' 125.2 120.0
C9' C1' C6' 117.3 119.9
N9' C9' H9'1 110.4 109.5
N9' C9' H9'2 110.3 109.4
C9' N9' CN' 119.5 120.0
H9'1 C9' H9'2 99.9 109.5
C2' C1' C6' 117.2 120.1
C1' C2' C3' 119.2 120.1
C1' C2' H2' 120.2 120.0
C1' C6' C5' 121.8 120.1
C1' C6' H6' 120.6 120.0
C3' C2' H2' 120.6 119.9
C2' C3' C4' 122.3 119.9
C2' C3' O3' 122.6 120.1
C4' C3' O3' 114.9 120.0
C3' C4' C5' 117.8 119.9
C3' C4' H4' 121.9 120.0
C3' O3' C31 125.0 106.8
C5' C4' H4' 120.3 120.1
C4' C5' C6' 121.2 120.0
C4' C5' O5' 115.9 120.0
C6' C5' O5' 122.4 120.0
C5' C6' H6' 117.6 120.0
C5' O5' C51 106.2 106.8
O3' C31 H311 106.7 109.4
O3' C31 H312 125.0 109.5
O3' C31 H313 106.7 109.4
H311 C31 H312 106.7 109.5
H311 C31 H313 102.9 109.5
H312 C31 H313 106.7 109.5
O5' C51 H511 113.4 109.5
O5' C51 H512 106.2 109.5
O5' C51 H513 113.5 109.5
H511 C51 H512 113.5 109.4
H511 C51 H513 97.0 109.4
H512 C51 H513 113.4 109.5
N9' CN' HCN1 105.9 109.5
N9' CN' HCN2 127.5 109.5
N9' CN' HCN3 105.9 109.5
HCN1 CN' HCN2 105.9 109.4
HCN1 CN' HCN3 103.5 109.5
HCN2 CN' HCN3 105.9 109.5
HN21 N2' HN22 105.6 120.0
HN41 N4' HN42 105.2 120.0

Torsion Angles for COQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N2' C2B N1' N3' 185.5 180.0
N1' C2B N2' HN21 54.7 179.9
N1' C2B N2' HN22 180.0 0.1
N1' C2B N3' C4B 3.9 360.0
C4A C8A N1' C2B 3.1 0.0
C2B N1' C8A N8' 183.2 180.0
N1' C2B N2' N3' 174.7 180.0
N2' C2B N1' C8A 180.7 180.0
N2' C2B N3' C4B 179.2 180.0
HN21 N2' C2B HN22 234.7 179.8
N1' C2B N3' N2' 184.7 180.0
N3' C2B N1' C8A 355.2 360.0
N3' C2B N2' HN21 240.0 359.9
N3' C2B N2' HN22 5.3 180.1
C4A C4B N3' C2B 359.1 0.0
C2B N3' C4B N4' 180.8 180.0
C2B N3' C4B C4A 359.1 0.0
N3' C4B C4A N4' 182.1 180.0
C4A C4B N4' HN41 54.7 180.1
C4A C4B N4' HN42 180.0 0.0
C5B C4A C4B C8A 182.4 180.2
C4B C4A C5B C6B 178.4 180.2
C4B C4A C5B H5' 358.4 0.0
C4B C4A C8A N1' 359.9 0.0
C4B C4A C8A N8' 179.8 180.0
C4A C4B N3' N4' 178.2 180.0
N3' C4B C4A C5B 181.4 180.2
N3' C4B C4A C8A 359.0 360.0
N3' C4B N4' HN41 232.7 0.1
N3' C4B N4' HN42 358.0 180.0
C4A C4B N4' N3' 182.0 180.0
N4' C4B C4A C5B 359.3 0.2
N4' C4B C4A C8A 176.9 180.0
HN41 N4' C4B HN42 234.7 180.1
C5B C4A C4B N3' 181.4 180.2
C5B C4A C4B N4' 359.3 0.2
C4B C4A C5B C8A 177.5 179.8
C5B C4A C8A N1' 177.6 179.8
C5B C4A C8A N8' 357.5 359.8
C6B C5B C4A H5' 180.0 180.2
C4A C5B C6B C7' 2.1 359.6
C4A C5B C6B N9' 177.0 179.8
C2B N1' C8A C4A 3.1 0.0
C8A C4A C4B N3' 359.0 360.0
C8A C4A C4B N4' 176.9 180.0
C4B C4A C8A C5B 182.3 180.2
C8A C4A C5B C6B 0.9 0.5
C8A C4A C5B H5' 180.9 180.3
C7' N8' C8A C4A 1.0 360.0
N1' C8A C4A N8' 180.1 180.0
C6B C5B C4A C8A 0.9 0.5
C4A C5B C6B H5' 180.0 179.8
C7' C6B C5B N9' 185.1 179.8
C5B C6B C7' N8' 356.2 0.2
C5B C6B C7' H7' 176.2 180.2
C5B C6B N9' C9' 269.6 179.7
C5B C6B N9' CN' 92.8 359.8
H5' C5B C4A C8A 180.9 180.3
C4A C5B H5' C6B 180.0 180.2
H5' C5B C6B C7' 182.1 179.7
H5' C5B C6B N9' 357.0 360.0
C7' C6B C5B H5' 182.1 179.7
C5B C6B C7' N9' 174.9 180.2
C7' C6B N9' C9' 84.3 359.9
C7' C6B N9' CN' 267.5 180.0
N8' C7' C6B H7' 180.0 179.9
C6B C7' N8' C8A 2.3 0.1
N9' C6B C5B H5' 357.0 360.0
C5B C6B N9' C7' 185.3 179.8
N9' C6B C7' N8' 181.3 180.0
N9' C6B C7' H7' 1.3 0.0
C1' C9' N9' C6B 288.2 270.0
C6B N9' C9' H9'1 53.4 150.0
C6B N9' C9' H9'2 162.9 30.1
C9' N9' C6B CN' 176.8 179.9
C6B N9' CN' HCN1 54.7 180.0
C6B N9' CN' HCN2 180.0 300.0
C6B N9' CN' HCN3 305.3 60.0
C4A C8A N8' C7' 1.0 360.0
N8' C7' C6B N9' 181.3 180.0
C6B C7' N8' H7' 180.0 180.1
N1' C8A N8' C7' 180.9 180.0
H7' C7' C6B N9' 1.3 0.0
C6B C7' H7' N8' 180.0 179.9
H7' C7' N8' C8A 182.3 180.0
C8A N1' C2B N2' 180.7 180.0
C8A N1' C2B N3' 355.2 360.0
C4A C8A N1' N8' 179.9 180.0
C7' N8' C8A N1' 180.9 180.0
C4A C8A N8' N1' 180.1 180.0
C8A N8' C7' H7' 182.3 180.0
C6B N9' C9' C1' 288.2 270.0
N9' C9' C1' H9'1 125.3 240.0
N9' C9' C1' H9'2 234.7 120.0
C1' C9' N9' CN' 105.3 90.0
H9'1 C9' C1' H9'2 109.5 240.0
C2' C1' C9' C6' 174.3 179.9
C9' C1' C2' C3' 180.3 180.0
C9' C1' C2' H2' 0.3 0.1
C9' C1' C6' C5' 176.4 180.0
C9' C1' C6' H6' 356.4 360.0
C6B N9' C9' CN' 182.9 180.1
C1' C9' N9' H9'1 234.7 120.0
C1' C9' N9' H9'2 125.3 240.0
N9' C9' C1' C2' 308.9 90.0
N9' C9' C1' C6' 134.6 270.0
H9'1 C9' N9' H9'2 250.5 120.0
C9' N9' CN' HCN1 238.1 0.1
C9' N9' CN' HCN2 3.4 120.0
C9' N9' CN' HCN3 128.7 240.0
C1' C9' H9'1 N9' 127.6 240.0
C1' C9' H9'1 H9'2 243.8 120.0
H9'1 C9' C1' C2' 183.6 210.0
H9'1 C9' C1' C6' 9.4 30.0
N9' C9' H9'1 H9'2 116.2 240.1
H9'1 C9' N9' CN' 230.5 330.0
C1' C9' H9'2 N9' 232.4 120.0
C1' C9' H9'2 H9'1 116.2 240.0
H9'2 C9' C1' C2' 74.2 330.0
H9'2 C9' C1' C6' 259.9 150.1
N9' C9' H9'2 H9'1 243.8 120.0
H9'2 C9' N9' CN' 340.0 210.0
C2' C1' C9' N9' 308.9 90.0
C2' C1' C9' H9'1 183.6 210.0
C2' C1' C9' H9'2 74.2 330.0
C9' C1' C2' C6' 185.7 180.1
C2' C1' C6' C5' 1.7 0.1
C2' C1' C6' H6' 181.7 180.0
C3' C2' C1' H2' 180.0 180.0
C1' C2' C3' C4' 3.5 0.2
C1' C2' C3' O3' 179.5 180.0
C6' C1' C9' N9' 134.6 270.0
C6' C1' C9' H9'1 9.4 30.0
C6' C1' C9' H9'2 259.9 150.1
C9' C1' C6' C2' 174.7 179.9
C6' C1' C2' C3' 354.6 360.0
C6' C1' C2' H2' 174.6 180.0
C4' C5' C6' C1' 4.4 359.7
C1' C6' C5' O5' 176.4 180.0
C5' C6' C1' H6' 180.0 180.0
C3' C2' C1' C6' 354.6 360.0
C1' C2' C3' H2' 180.0 180.0
C4' C3' C2' O3' 184.0 180.2
C2' C3' C4' C5' 2.5 359.5
C2' C3' C4' H4' 182.5 180.0
C2' C3' O3' C31 94.7 180.0
H2' C2' C1' C6' 174.6 180.0
C1' C2' H2' C3' 180.0 180.0
H2' C2' C3' C4' 183.5 180.2
H2' C2' C3' O3' 359.4 360.0
C4' C3' C2' H2' 183.5 180.2
C2' C3' C4' O3' 176.3 179.8
C4' C3' O3' C31 271.0 359.8
C5' C4' C3' H4' 180.0 179.5
C3' C4' C5' C6' 353.6 0.5
C3' C4' C5' O5' 181.1 180.2
O3' C3' C2' H2' 359.4 360.0
C2' C3' O3' C4' 183.7 180.2
O3' C3' C4' C5' 186.3 179.7
O3' C3' C4' H4' 6.3 0.2
C3' O3' C31 H311 54.8 180.0
C3' O3' C31 H312 180.0 300.0
C3' O3' C31 H313 305.3 60.0
C1' C6' C5' C4' 4.4 359.7
C5' C4' C3' O3' 186.3 179.7
C3' C4' C5' H4' 180.0 180.5
C6' C5' C4' O5' 172.5 180.3
C4' C5' C6' H6' 184.5 179.7
C4' C5' O5' C51 348.2 0.3
H4' C4' C3' O3' 6.3 0.2
C3' C4' H4' C5' 180.0 179.5
H4' C4' C5' C6' 173.6 180.0
H4' C4' C5' O5' 1.1 359.7
C1' C6' C5' H6' 180.0 180.0
C6' C5' C4' H4' 173.6 180.0
C4' C5' C6' O5' 188.0 179.7
C6' C5' O5' C51 175.8 180.0
O5' C5' C4' H4' 1.1 359.7
C4' C5' O5' C6' 172.4 180.3
O5' C5' C6' H6' 356.5 0.1
C5' O5' C51 H511 54.7 180.0
C5' O5' C51 H512 180.0 299.9
C5' O5' C51 H513 305.3 60.0
C1' C6' H6' C5' 180.0 180.0
H6' C6' C5' O5' 356.5 0.1
H311 C31 O3' H312 234.7 240.0
H311 C31 O3' H313 109.5 120.0
H312 C31 O3' H313 234.8 240.0
O3' C31 H311 H312 135.7 120.0
O3' C31 H311 H313 247.8 240.1
H312 C31 H311 H313 112.2 120.1
O3' C31 H312 H311 234.8 240.0
O3' C31 H312 H313 125.2 119.9
H311 C31 H312 H313 250.5 239.9
O3' C31 H313 H311 112.2 120.0
O3' C31 H313 H312 224.3 240.0
H311 C31 H313 H312 112.2 120.1
H511 C51 O5' H512 234.7 240.1
H511 C51 O5' H513 109.5 120.0
H512 C51 O5' H513 234.7 239.9
O5' C51 H511 H512 121.3 120.0
O5' C51 H511 H513 240.6 240.0
H512 C51 H511 H513 119.3 120.0
O5' C51 H512 H511 234.7 240.0
O5' C51 H512 H513 125.3 120.1
H511 C51 H512 H513 250.5 240.1
O5' C51 H513 H511 119.4 120.0
O5' C51 H513 H512 238.7 239.9
H511 C51 H513 H512 119.4 119.9
C6B N9' CN' C9' 176.6 179.9
CN' N9' C9' H9'1 230.5 330.0
CN' N9' C9' H9'2 340.0 210.0
HCN1 CN' N9' HCN2 234.7 240.0
HCN1 CN' N9' HCN3 109.5 120.0
HCN2 CN' N9' HCN3 234.7 240.0
N9' CN' HCN1 HCN2 137.7 120.0
N9' CN' HCN1 HCN3 248.9 240.0
HCN2 CN' HCN1 HCN3 111.2 120.0
N9' CN' HCN2 HCN1 234.7 240.0
N9' CN' HCN2 HCN3 125.3 120.0
HCN1 CN' HCN2 HCN3 250.6 240.0
N9' CN' HCN3 HCN1 111.2 120.1
N9' CN' HCN3 HCN2 222.3 240.0
HCN1 CN' HCN3 HCN2 111.1 119.9
HN21 N2' C2B N3' 240.0 359.9
C2B N2' HN21 HN22 138.5 180.2
HN22 N2' C2B N3' 5.3 180.1
C2B N2' HN22 HN21 234.8 179.8
C4B N4' HN41 HN42 139.3 179.9
C4B N4' HN42 HN41 234.7 180.1