PDB Chemical Component COM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for COM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.533 |
1.530 |
C1 |
S1 |
1.795 |
1.814 |
C1 |
H11 |
1.114 |
1.090 |
C1 |
H12 |
1.115 |
1.089 |
C2 |
S2 |
1.797 |
1.813 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.115 |
1.089 |
S1 |
HS1 |
0.949 |
1.344 |
S2 |
O1S |
1.498 |
1.421 |
S2 |
O2S |
1.503 |
1.420 |
S2 |
O3S |
1.521 |
1.521 |
O3S |
HOS3 |
0.950 |
0.967 |
Bond Angles for COM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
S1 |
109.6 |
109.5 |
C2 |
C1 |
H11 |
112.1 |
109.4 |
C2 |
C1 |
H12 |
112.1 |
109.5 |
C1 |
C2 |
S2 |
111.5 |
109.5 |
C1 |
C2 |
H21 |
111.5 |
109.4 |
C1 |
C2 |
H22 |
111.5 |
109.5 |
S1 |
C1 |
H11 |
112.2 |
109.4 |
S1 |
C1 |
H12 |
112.2 |
109.5 |
C1 |
S1 |
HS1 |
109.6 |
100.0 |
H11 |
C1 |
H12 |
98.3 |
109.5 |
S2 |
C2 |
H21 |
111.4 |
109.5 |
S2 |
C2 |
H22 |
111.4 |
109.5 |
C2 |
S2 |
O1S |
108.2 |
111.6 |
C2 |
S2 |
O2S |
109.7 |
111.7 |
C2 |
S2 |
O3S |
108.9 |
103.2 |
H21 |
C2 |
H22 |
98.9 |
109.5 |
O1S |
S2 |
O2S |
110.2 |
122.1 |
O1S |
S2 |
O3S |
110.2 |
102.7 |
O2S |
S2 |
O3S |
109.6 |
102.9 |
S2 |
O3S |
HOS3 |
108.9 |
106.8 |
Torsion Angles for COM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
S1 |
C1 |
C2 |
H11 |
234.7 |
240.0 |
S1 |
C1 |
C2 |
H12 |
125.2 |
120.1 |
C2 |
C1 |
S1 |
HS1 |
180.0 |
180.0 |
H11 |
C1 |
C2 |
H12 |
250.5 |
240.0 |
S2 |
C2 |
C1 |
H21 |
234.7 |
120.0 |
S2 |
C2 |
C1 |
H22 |
125.2 |
239.9 |
C1 |
C2 |
S2 |
O1S |
319.0 |
70.3 |
C1 |
C2 |
S2 |
O2S |
79.3 |
289.8 |
C1 |
C2 |
S2 |
O3S |
199.2 |
180.0 |
H21 |
C2 |
C1 |
H22 |
250.5 |
120.0 |
C2 |
C1 |
S1 |
H11 |
125.3 |
120.0 |
C2 |
C1 |
S1 |
H12 |
234.8 |
240.0 |
S1 |
C1 |
C2 |
S2 |
198.0 |
180.0 |
S1 |
C1 |
C2 |
H21 |
323.3 |
60.0 |
S1 |
C1 |
C2 |
H22 |
72.8 |
300.1 |
H11 |
C1 |
S1 |
H12 |
109.5 |
120.0 |
C2 |
C1 |
H11 |
S1 |
236.1 |
240.0 |
C2 |
C1 |
H11 |
H12 |
118.0 |
120.0 |
H11 |
C1 |
C2 |
S2 |
323.3 |
300.0 |
H11 |
C1 |
C2 |
H21 |
88.6 |
180.0 |
H11 |
C1 |
C2 |
H22 |
198.1 |
60.0 |
S1 |
C1 |
H11 |
H12 |
241.9 |
240.0 |
H11 |
C1 |
S1 |
HS1 |
54.7 |
60.1 |
C2 |
C1 |
H12 |
S1 |
123.8 |
120.1 |
C2 |
C1 |
H12 |
H11 |
241.9 |
240.0 |
H12 |
C1 |
C2 |
S2 |
72.8 |
59.9 |
H12 |
C1 |
C2 |
H21 |
198.1 |
300.0 |
H12 |
C1 |
C2 |
H22 |
307.5 |
180.0 |
S1 |
C1 |
H12 |
H11 |
118.1 |
120.0 |
H12 |
C1 |
S1 |
HS1 |
305.2 |
300.1 |
S2 |
C2 |
C1 |
S1 |
198.0 |
180.0 |
S2 |
C2 |
C1 |
H11 |
323.3 |
300.0 |
S2 |
C2 |
C1 |
H12 |
72.8 |
59.9 |
C1 |
C2 |
S2 |
H21 |
125.3 |
240.1 |
C1 |
C2 |
S2 |
H22 |
234.7 |
120.0 |
H21 |
C2 |
S2 |
H22 |
109.4 |
240.0 |
O1S |
S2 |
C2 |
O2S |
239.7 |
140.5 |
O1S |
S2 |
C2 |
O3S |
119.8 |
250.3 |
O2S |
S2 |
C2 |
O3S |
240.0 |
109.8 |
C2 |
S2 |
O3S |
HOS3 |
180.0 |
180.0 |
H21 |
C2 |
C1 |
S1 |
323.3 |
60.0 |
H21 |
C2 |
C1 |
H11 |
88.6 |
180.0 |
H21 |
C2 |
C1 |
H12 |
198.1 |
300.0 |
C1 |
C2 |
H21 |
S2 |
234.7 |
120.0 |
C1 |
C2 |
H21 |
H22 |
117.4 |
240.0 |
S2 |
C2 |
H21 |
H22 |
242.7 |
120.0 |
H21 |
C2 |
S2 |
O1S |
193.7 |
190.3 |
H21 |
C2 |
S2 |
O2S |
313.9 |
49.7 |
H21 |
C2 |
S2 |
O3S |
73.9 |
299.9 |
H22 |
C2 |
C1 |
S1 |
72.8 |
300.1 |
H22 |
C2 |
C1 |
H11 |
198.1 |
60.0 |
H22 |
C2 |
C1 |
H12 |
307.5 |
180.0 |
C1 |
C2 |
H22 |
S2 |
125.3 |
240.0 |
C1 |
C2 |
H22 |
H21 |
242.6 |
120.0 |
S2 |
C2 |
H22 |
H21 |
117.3 |
240.0 |
H22 |
C2 |
S2 |
O1S |
84.3 |
310.3 |
H22 |
C2 |
S2 |
O2S |
204.5 |
169.7 |
H22 |
C2 |
S2 |
O3S |
324.5 |
59.9 |
HS1 |
S1 |
C1 |
H11 |
54.7 |
60.1 |
HS1 |
S1 |
C1 |
H12 |
305.2 |
300.1 |
O1S |
S2 |
C2 |
H21 |
193.7 |
190.3 |
O1S |
S2 |
C2 |
H22 |
84.3 |
310.3 |
C2 |
S2 |
O1S |
O2S |
120.0 |
224.2 |
C2 |
S2 |
O1S |
O3S |
241.1 |
109.9 |
O2S |
S2 |
O1S |
O3S |
121.1 |
245.7 |
O1S |
S2 |
O3S |
HOS3 |
61.4 |
296.2 |
O2S |
S2 |
C2 |
H21 |
313.9 |
49.7 |
O2S |
S2 |
C2 |
H22 |
204.5 |
169.7 |
C2 |
S2 |
O2S |
O1S |
241.0 |
135.8 |
C2 |
S2 |
O2S |
O3S |
119.5 |
250.0 |
O1S |
S2 |
O2S |
O3S |
238.6 |
114.2 |
O2S |
S2 |
O3S |
HOS3 |
300.0 |
63.8 |
O3S |
S2 |
C2 |
H21 |
73.9 |
299.9 |
O3S |
S2 |
C2 |
H22 |
324.5 |
59.9 |
C2 |
S2 |
O3S |
O1S |
118.5 |
243.9 |
C2 |
S2 |
O3S |
O2S |
240.0 |
116.3 |
O1S |
S2 |
O3S |
O2S |
121.4 |
232.4 |