PDB Chemical Component CO4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CO4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N2' C2D 1.304 1.382
N2' H2'1 1.020 0.970
N2' H2'2 1.019 0.969
C2D N3' 1.346 1.329
C2D N1' 1.358 1.319
N3' C4D 1.321 1.325
C4D N4' 1.360 1.377
C4D C4A 1.428 1.416
N4' H4'1 1.020 0.970
N4' H4'2 1.020 0.970
C4A C5D 1.445 1.399
C4A C8A 1.399 1.416
C5D C6D 1.373 1.370
C5D C51 1.514 1.508
C6D C7' 1.423 1.390
C6D C8' 1.552 1.507
C7' N8' 1.345 1.314
C7' H7' 1.103 1.080
N8' C8A 1.410 1.334
C8A N1' 1.399 1.341
C8' N9' 1.445 1.464
C8' H8'1 1.116 1.090
C8' H8'2 1.115 1.089
N9' C1' 1.383 1.399
N9' C9' 1.468 1.465
C1' C6' 1.426 1.387
C1' C2' 1.418 1.388
C6' C5' 1.386 1.386
C6' H6' 1.103 1.080
C5' O5' 1.375 1.360
C5' C4' 1.384 1.390
O5' C5B 1.436 1.429
C5B H5B1 1.116 1.090
C5B H5B2 1.115 1.089
C5B H5B3 1.115 1.090
C4' O4' 1.425 1.361
C4' C3' 1.389 1.390
O4' C4B 1.428 1.429
C4B H4B1 1.115 1.090
C4B H4B2 1.115 1.089
C4B H4B3 1.115 1.090
C3' O3' 1.381 1.360
C3' C2' 1.386 1.385
O3' C3B 1.446 1.429
C3B H3B1 1.115 1.090
C3B H3B2 1.115 1.091
C3B H3B3 1.115 1.089
C2' H2' 1.103 1.079
C9' H9'1 1.115 1.090
C9' H9'2 1.116 1.090
C9' H9'3 1.115 1.090
C51 H511 1.115 1.089
C51 H512 1.116 1.089
C51 H513 1.115 1.090

Bond Angles for CO4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2D N2' H2'1 105.7 120.0
C2D N2' H2'2 128.0 120.0
N2' C2D N3' 128.0 118.6
N2' C2D N1' 109.9 118.6
H2'1 N2' H2'2 105.7 120.0
N3' C2D N1' 122.1 122.9
C2D N3' C4D 120.4 121.3
C2D N1' C8A 117.2 120.5
N3' C4D N4' 112.2 120.9
N3' C4D C4A 123.6 118.3
N4' C4D C4A 124.1 120.8
C4D N4' H4'1 111.2 120.0
C4D N4' H4'2 112.1 120.0
C4D C4A C5D 128.1 122.2
C4D C4A C8A 113.0 118.6
H4'1 N4' H4'2 111.2 120.0
C5D C4A C8A 118.8 119.3
C4A C5D C6D 120.2 118.1
C4A C5D C51 119.5 121.0
C4A C8A N8' 121.4 119.8
C4A C8A N1' 123.5 118.5
C6D C5D C51 120.3 120.9
C5D C6D C7' 117.1 119.8
C5D C6D C8' 125.9 120.1
C5D C51 H511 108.6 109.4
C5D C51 H512 119.5 109.5
C5D C51 H513 108.6 109.5
C7' C6D C8' 117.0 120.0
C6D C7' N8' 125.3 121.8
C6D C7' H7' 120.5 119.1
C6D C8' N9' 125.8 109.5
C6D C8' H8'1 106.4 109.4
C6D C8' H8'2 106.5 109.4
N8' C7' H7' 114.2 119.2
C7' N8' C8A 117.0 121.2
N8' C8A N1' 115.1 121.7
N9' C8' H8'1 106.4 109.5
N9' C8' H8'2 106.4 109.5
C8' N9' C1' 120.9 120.0
C8' N9' C9' 125.4 120.0
H8'1 C8' H8'2 103.1 109.4
C1' N9' C9' 111.3 120.0
N9' C1' C6' 119.9 120.0
N9' C1' C2' 116.1 119.9
N9' C9' H9'1 106.6 109.5
N9' C9' H9'2 125.4 109.4
N9' C9' H9'3 106.6 109.5
C6' C1' C2' 123.9 120.1
C1' C6' C5' 113.2 120.0
C1' C6' H6' 124.7 120.0
C1' C2' C3' 116.9 120.0
C1' C2' H2' 122.6 120.0
C5' C6' H6' 122.2 119.9
C6' C5' O5' 114.7 120.0
C6' C5' C4' 126.3 119.9
O5' C5' C4' 118.9 120.0
C5' O5' C5B 110.9 106.8
C5' C4' O4' 119.9 120.0
C5' C4' C3' 117.3 119.9
O5' C5B H5B1 111.7 109.5
O5' C5B H5B2 110.9 109.5
O5' C5B H5B3 111.7 109.5
H5B1 C5B H5B2 111.7 109.4
H5B1 C5B H5B3 98.7 109.5
H5B2 C5B H5B3 111.7 109.5
O4' C4' C3' 122.8 120.1
C4' O4' C4B 110.4 106.8
C4' C3' O3' 113.0 119.9
C4' C3' C2' 122.3 120.0
O4' C4B H4B1 111.9 109.4
O4' C4B H4B2 110.4 109.4
O4' C4B H4B3 111.9 109.4
H4B1 C4B H4B2 111.9 109.5
H4B1 C4B H4B3 98.5 109.5
H4B2 C4B H4B3 111.9 109.6
O3' C3' C2' 124.5 120.0
C3' O3' C3B 113.6 106.8
C3' C2' H2' 120.5 120.0
O3' C3B H3B1 110.7 109.5
O3' C3B H3B2 113.6 109.5
O3' C3B H3B3 110.7 109.4
H3B1 C3B H3B2 110.7 109.4
H3B1 C3B H3B3 99.6 109.5
H3B2 C3B H3B3 110.7 109.5
H9'1 C9' H9'2 106.6 109.5
H9'1 C9' H9'3 102.9 109.5
H9'2 C9' H9'3 106.6 109.5
H511 C51 H512 108.6 109.5
H511 C51 H513 101.4 109.4
H512 C51 H513 108.6 109.5

Torsion Angles for CO4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H2'1 N2' C2D H2'2 234.8 180.1
N3' C2D N2' N1' 182.1 179.9
N2' C2D N3' C4D 179.2 180.0
N2' C2D N1' C8A 178.7 180.0
C2D N2' H2'1 H2'2 138.1 179.9
H2'1 N2' C2D N3' 54.8 0.0
H2'1 N2' C2D N1' 232.6 180.1
C2D N2' H2'2 H2'1 234.8 180.1
H2'2 N2' C2D N3' 180.0 180.0
H2'2 N2' C2D N1' 357.8 0.0
N3' C2D N2' H2'1 54.8 0.0
N3' C2D N2' H2'2 180.0 180.0
N2' C2D N3' N1' 177.6 180.1
N3' C2D N1' C8A 356.8 0.1
C2D N3' C4D N4' 178.2 180.0
C2D N3' C4D C4A 2.5 0.0
N1' C2D N2' H2'1 232.6 180.1
N1' C2D N2' H2'2 357.8 0.0
N2' C2D N1' N3' 182.0 179.9
N1' C2D N3' C4D 1.6 360.0
C4A C8A N1' C2D 1.0 359.9
N8' C8A N1' C2D 181.3 179.9
C4D N3' C2D N1' 1.6 360.0
N4' C4D N3' C4A 175.7 180.0
N3' C4D N4' H4'1 54.7 41.7
N3' C4D N4' H4'2 180.0 221.6
N3' C4D C4A C5D 178.1 180.3
N3' C4D C4A C8A 355.6 360.0
N3' C4D N4' C4A 184.3 180.0
N4' C4D C4A C5D 2.9 0.3
N4' C4D C4A C8A 180.4 180.0
H4'1 N4' C4D H4'2 234.7 180.1
N3' C4D C4A N4' 175.2 180.0
C4A C4D N4' H4'1 230.4 221.7
C4A C4D N4' H4'2 355.7 41.6
C5D C4A C4D C8A 182.5 180.3
C4D C4A C5D C6D 174.5 180.2
C4D C4A C5D C51 356.7 360.0
C4D C4A C8A N8' 182.2 180.0
C4D C4A C8A N1' 2.6 0.1
H4'1 N4' C4D C4A 230.4 221.7
C4D N4' H4'1 H4'2 125.8 179.9
H4'2 N4' C4D C4A 355.7 41.6
C4D N4' H4'2 H4'1 234.7 180.1
C4D C4A C5D C8A 177.4 179.7
C5D C4A C8A N8' 360.0 359.7
C5D C4A C8A N1' 180.3 179.8
C6D C5D C4A C51 177.8 180.2
C4A C5D C6D C7' 5.3 359.5
C4A C5D C6D C8' 181.7 179.8
C4A C5D C51 H511 54.7 276.9
C4A C5D C51 H512 180.0 37.0
C4A C5D C51 H513 305.2 157.0
C2D N1' C8A C4A 1.0 359.9
C4D C4A C8A C5D 182.3 180.3
C8A C4A C5D C6D 357.1 0.5
C8A C4A C5D C51 179.3 180.3
C7' N8' C8A C4A 0.2 360.0
N8' C8A C4A N1' 179.6 179.9
C6D C5D C4A C8A 357.1 0.5
C4A C5D C6D C51 182.2 179.8
C6D C5D C51 H511 237.0 96.7
C6D C5D C51 H512 2.2 216.8
C6D C5D C51 H513 127.5 336.8
C7' C6D C5D C8' 183.6 179.7
C5D C6D C7' N8' 354.5 0.2
C5D C6D C7' H7' 174.5 180.3
C5D C6D C8' N9' 173.2 179.7
C5D C6D C8' H8'1 47.9 59.7
C5D C6D C8' H8'2 298.4 299.8
C51 C5D C4A C8A 179.3 180.3
C4A C5D C51 C6D 177.8 180.2
C51 C5D C6D C7' 183.1 179.7
C51 C5D C6D C8' 359.5 0.0
H511 C51 C5D H512 234.8 239.9
H511 C51 C5D H513 109.5 119.9
H512 C51 C5D H513 234.7 240.0
C7' C6D C5D C51 183.1 179.7
C5D C6D C7' C8' 176.7 180.3
C7' C6D C8' N9' 349.5 360.0
C7' C6D C8' H8'1 224.3 240.0
C7' C6D C8' H8'2 114.8 120.1
N8' C7' C6D H7' 180.0 180.0
C6D C7' N8' C8A 2.7 0.0
C8' C6D C5D C51 359.5 0.0
C5D C6D C8' C7' 183.6 179.7
C8' C6D C7' N8' 177.8 179.9
C8' C6D C7' H7' 357.8 360.0
N9' C8' C6D H8'1 125.3 120.0
N9' C8' C6D H8'2 234.7 239.9
C6D C8' N9' C1' 74.3 90.0
C6D C8' N9' C9' 273.5 270.0
H8'1 C8' C6D H8'2 109.5 119.9
C4A C8A N8' C7' 0.2 360.0
N8' C7' C6D C8' 177.8 179.9
C6D C7' N8' H7' 180.0 180.0
C7' N8' C8A N1' 179.8 179.9
H7' C7' C6D C8' 357.8 360.0
C6D C7' H7' N8' 180.0 180.0
H7' C7' N8' C8A 182.7 180.0
C2D N1' C8A N8' 181.3 179.9
C4A C8A N8' N1' 180.3 180.1
C8A N8' C7' H7' 182.7 180.0
C4A C8A N1' N8' 179.6 179.9
C6D C8' N9' H8'1 234.7 240.0
C6D C8' N9' H8'2 125.3 120.0
H8'1 C8' N9' H8'2 250.5 240.0
C1' N9' C8' C9' 160.9 180.0
C8' N9' C1' C6' 18.6 177.7
C8' N9' C1' C2' 196.0 357.6
C8' N9' C9' H9'1 54.7 185.2
C8' N9' C9' H9'2 180.0 305.2
C8' N9' C9' H9'3 305.3 65.2
C6D C8' H8'1 N9' 136.4 120.0
C6D C8' H8'1 H8'2 248.2 240.1
N9' C8' H8'1 H8'2 111.8 120.1
H8'1 C8' N9' C1' 199.6 210.0
H8'1 C8' N9' C9' 38.8 30.0
C6D C8' H8'2 N9' 223.6 239.9
C6D C8' H8'2 H8'1 111.8 119.9
N9' C8' H8'2 H8'1 248.2 240.0
H8'2 C8' N9' C1' 309.1 330.0
H8'2 C8' N9' C9' 148.2 150.0
C1' N9' C8' H8'1 199.6 210.0
C1' N9' C8' H8'2 309.1 330.0
C8' N9' C1' C9' 196.7 180.0
C1' N9' C9' H9'1 252.3 5.2
C1' N9' C9' H9'2 17.6 125.2
C1' N9' C9' H9'3 142.9 245.2
C6' C1' N9' C2' 182.6 180.0
N9' C1' C6' C5' 180.7 180.0
N9' C1' C6' H6' 0.7 360.0
N9' C1' C2' C3' 178.1 180.0
N9' C1' C2' H2' 358.1 0.0
C9' N9' C8' H8'1 38.8 30.0
C9' N9' C8' H8'2 148.2 150.0
C8' N9' C9' C1' 162.4 180.0
C9' N9' C1' C6' 181.9 357.7
C9' N9' C1' C2' 359.3 177.6
H9'1 C9' N9' H9'2 234.7 240.0
H9'1 C9' N9' H9'3 109.4 120.0
H9'2 C9' N9' H9'3 234.8 240.0
C6' C1' N9' C9' 181.9 357.7
N9' C1' C6' C2' 177.2 180.0
C6' C1' C2' C3' 355.5 359.9
C6' C1' C2' H2' 175.4 180.0
C5' C6' C1' H6' 180.0 180.0
C1' C6' C5' O5' 183.3 180.0
C1' C6' C5' C4' 359.2 0.2
C2' C1' N9' C9' 359.3 177.6
N9' C1' C2' C6' 182.7 180.0
C2' C1' C6' C5' 3.5 0.1
C2' C1' C6' H6' 183.5 180.0
C4' C3' C2' C1' 2.8 359.8
O3' C3' C2' C1' 178.9 180.0
C3' C2' C1' H2' 180.0 179.9
C5' C6' C1' C2' 3.5 0.1
C1' C6' C5' H6' 180.0 180.0
O5' C5' C6' C4' 184.1 179.7
C6' C5' O5' C5B 351.8 360.0
C6' C5' C4' O4' 181.5 180.0
C6' C5' C4' C3' 359.3 359.5
H6' C6' C1' C2' 183.5 180.0
C1' C6' H6' C5' 180.0 180.0
H6' C6' C5' O5' 3.3 0.0
H6' C6' C5' C4' 179.2 180.3
O5' C5' C6' H6' 3.3 0.0
C6' C5' O5' C4' 176.2 180.3
O5' C5' C4' O4' 357.3 0.3
O5' C5' C4' C3' 175.0 179.7
C5' O5' C5B H5B1 54.7 180.0
C5' O5' C5B H5B2 180.0 300.0
C5' O5' C5B H5B3 305.2 60.0
C4' C5' C6' H6' 179.2 180.3
C6' C5' C4' O5' 184.3 179.7
C4' C5' O5' C5B 175.6 179.7
O4' C4' C5' C3' 182.2 180.6
C5' C4' O4' C4B 184.3 269.5
C5' C4' C3' O3' 183.1 180.3
C5' C4' C3' C2' 359.7 0.5
C5B O5' C5' C4' 175.6 179.7
H5B1 C5B O5' H5B2 234.7 240.0
H5B1 C5B O5' H5B3 109.5 120.0
H5B2 C5B O5' H5B3 234.8 240.0
O5' C5B H5B1 H5B2 124.9 120.0
O5' C5B H5B1 H5B3 242.4 240.0
H5B2 C5B H5B1 H5B3 117.6 120.0
O5' C5B H5B2 H5B1 234.7 240.0
O5' C5B H5B2 H5B3 125.3 120.0
H5B1 C5B H5B2 H5B3 250.5 240.0
O5' C5B H5B3 H5B1 117.6 120.0
O5' C5B H5B3 H5B2 235.2 240.0
H5B1 C5B H5B3 H5B2 117.6 120.0
C5' C4' O4' C3' 177.6 179.4
O4' C4' C3' O3' 0.8 359.7
O4' C4' C3' C2' 177.4 180.0
C4' O4' C4B H4B1 54.7 180.0
C4' O4' C4B H4B2 180.0 300.0
C4' O4' C4B H4B3 305.2 60.0
C1' C2' C3' C4' 2.8 359.8
C5' C4' C3' O4' 182.3 180.6
C3' C4' O4' C4B 6.6 90.0
O3' C3' C4' C2' 183.5 179.7
C4' C3' O3' C3B 183.3 180.3
C4' C3' C2' H2' 182.8 179.7
C4B O4' C4' C3' 6.6 90.0
H4B1 C4B O4' H4B2 234.7 240.1
H4B1 C4B O4' H4B3 109.5 120.0
H4B2 C4B O4' H4B3 234.8 239.9
O4' C4B H4B1 H4B2 124.5 119.9
O4' C4B H4B1 H4B3 242.2 240.0
H4B2 C4B H4B1 H4B3 117.8 120.2
O4' C4B H4B2 H4B1 234.7 240.1
O4' C4B H4B2 H4B3 125.2 120.0
H4B1 C4B H4B2 H4B3 250.5 239.9
O4' C4B H4B3 H4B1 117.8 120.0
O4' C4B H4B3 H4B2 235.6 240.1
H4B1 C4B H4B3 H4B2 117.8 120.1
C1' C2' C3' O3' 178.9 180.0
C4' C3' O3' C2' 176.5 180.3
O3' C3' C2' H2' 358.9 360.0
C3' O3' C3B H3B1 54.7 180.0
C3' O3' C3B H3B2 180.0 300.0
C3' O3' C3B H3B3 305.2 60.0
C1' C2' C3' H2' 180.0 180.1
C4' C3' C2' O3' 183.9 179.7
C2' C3' O3' C3B 6.8 0.0
C3B O3' C3' C2' 6.8 0.0
H3B1 C3B O3' H3B2 234.8 240.0
H3B1 C3B O3' H3B3 109.5 120.0
H3B2 C3B O3' H3B3 234.7 240.0
O3' C3B H3B1 H3B2 126.8 120.0
O3' C3B H3B1 H3B3 243.4 240.0
H3B2 C3B H3B1 H3B3 116.6 120.0
O3' C3B H3B2 H3B1 234.7 240.0
O3' C3B H3B2 H3B3 125.2 120.0
H3B1 C3B H3B2 H3B3 250.5 240.0
O3' C3B H3B3 H3B1 116.6 120.0
O3' C3B H3B3 H3B2 233.1 240.0
H3B1 C3B H3B3 H3B2 116.6 120.0
C1' C2' H2' C3' 180.0 179.9
N9' C9' H9'1 H9'2 136.0 120.0
N9' C9' H9'1 H9'3 248.0 240.0
H9'2 C9' H9'1 H9'3 112.0 120.0
N9' C9' H9'2 H9'1 234.7 240.0
N9' C9' H9'2 H9'3 125.3 120.0
H9'1 C9' H9'2 H9'3 250.6 240.0
N9' C9' H9'3 H9'1 112.0 120.0
N9' C9' H9'3 H9'2 224.0 240.0
H9'1 C9' H9'3 H9'2 112.0 120.0
C5D C51 H511 H512 131.4 120.0
C5D C51 H511 H513 245.7 240.1
H512 C51 H511 H513 114.3 120.1
C5D C51 H512 H511 234.8 240.0
C5D C51 H512 H513 125.3 120.0
H511 C51 H512 H513 250.5 240.0
C5D C51 H513 H511 114.3 119.9
C5D C51 H513 H512 228.6 240.0
H511 C51 H513 H512 114.3 120.1