PDB Chemical Component CNX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CNX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C1 |
1.168 |
1.136 |
| C1 |
C2 |
1.471 |
1.472 |
| C2 |
C3 |
1.531 |
1.529 |
| C3 |
C4 |
1.523 |
1.530 |
| C4 |
C5 |
1.516 |
1.530 |
| C5 |
C6 |
1.525 |
1.530 |
| C6 |
C7 |
1.509 |
1.529 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C7 |
H7B |
1.100 |
1.089 |
Bond Angles for CNX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
C2 |
169.8 |
179.9 |
| C1 |
C2 |
C3 |
112.3 |
109.5 |
| C1 |
C2 |
H2 |
108.5 |
109.5 |
| C1 |
C2 |
H2A |
107.9 |
109.5 |
| C2 |
C3 |
C4 |
106.2 |
109.5 |
| C3 |
C2 |
H2 |
108.6 |
109.5 |
| C3 |
C2 |
H2A |
107.9 |
109.5 |
| C2 |
C3 |
H3 |
110.6 |
109.5 |
| C2 |
C3 |
H3A |
111.2 |
109.5 |
| C3 |
C4 |
C5 |
113.3 |
109.5 |
| C4 |
C3 |
H3 |
110.6 |
109.5 |
| C4 |
C3 |
H3A |
111.3 |
109.5 |
| C3 |
C4 |
H4 |
108.2 |
109.5 |
| C3 |
C4 |
H4A |
107.4 |
109.5 |
| C4 |
C5 |
C6 |
108.0 |
109.5 |
| C5 |
C4 |
H4 |
108.2 |
109.5 |
| C5 |
C4 |
H4A |
107.3 |
109.5 |
| C4 |
C5 |
H5 |
109.9 |
109.5 |
| C4 |
C5 |
H5A |
110.3 |
109.5 |
| C5 |
C6 |
C7 |
110.5 |
109.5 |
| C6 |
C5 |
H5 |
110.0 |
109.5 |
| C6 |
C5 |
H5A |
110.3 |
109.5 |
| C5 |
C6 |
H6 |
109.2 |
109.5 |
| C5 |
C6 |
H6A |
108.9 |
109.5 |
| C7 |
C6 |
H6 |
109.1 |
109.5 |
| C7 |
C6 |
H6A |
108.9 |
109.5 |
| C6 |
C7 |
H7 |
109.5 |
109.5 |
| C6 |
C7 |
H7A |
109.5 |
109.5 |
| C6 |
C7 |
H7B |
109.5 |
109.5 |
| H2 |
C2 |
H2A |
111.7 |
109.5 |
| H3 |
C3 |
H3A |
107.0 |
109.4 |
| H4 |
C4 |
H4A |
112.5 |
109.5 |
| H5 |
C5 |
H5A |
108.4 |
109.5 |
| H6 |
C6 |
H6A |
110.3 |
109.4 |
| H7 |
C7 |
H7A |
109.5 |
109.5 |
| H7 |
C7 |
H7B |
109.4 |
109.5 |
| H7A |
C7 |
H7B |
109.4 |
109.5 |
Torsion Angles for CNX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
C2 |
C3 |
155.9 |
180.0 |
| N1 |
C1 |
C2 |
H2 |
275.9 |
300.0 |
| N1 |
C1 |
C2 |
H2A |
37.1 |
60.0 |
| C1 |
C2 |
C3 |
C4 |
29.9 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
H2A |
118.8 |
120.0 |
| C1 |
C2 |
C3 |
H3 |
149.9 |
300.0 |
| C1 |
C2 |
C3 |
H3A |
268.7 |
60.0 |
| H2 |
C2 |
C1 |
H2A |
238.8 |
240.0 |
| C1 |
C2 |
C3 |
H2 |
120.0 |
120.0 |
| C1 |
C2 |
C3 |
H2A |
241.2 |
240.0 |
| C2 |
C3 |
C4 |
C5 |
135.7 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
240.0 |
240.0 |
| C4 |
C3 |
C2 |
H3A |
121.2 |
120.0 |
| C2 |
C3 |
C4 |
H4 |
255.7 |
300.0 |
| C2 |
C3 |
C4 |
H4A |
17.4 |
60.0 |
| H2 |
C2 |
C3 |
H2A |
121.2 |
120.0 |
| H3 |
C3 |
C2 |
H3A |
241.2 |
240.1 |
| C4 |
C3 |
C2 |
H2 |
270.0 |
60.0 |
| C4 |
C3 |
C2 |
H2A |
148.8 |
300.0 |
| C2 |
C3 |
C4 |
H3 |
120.0 |
120.0 |
| C2 |
C3 |
C4 |
H3A |
238.8 |
240.0 |
| C3 |
C4 |
C5 |
C6 |
159.2 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
240.0 |
240.0 |
| C5 |
C4 |
C3 |
H4A |
118.3 |
120.0 |
| C3 |
C4 |
C5 |
H5 |
279.2 |
300.0 |
| C3 |
C4 |
C5 |
H5A |
38.7 |
60.0 |
| H3 |
C3 |
C4 |
H3A |
118.8 |
119.9 |
| H4 |
C4 |
C3 |
H4A |
238.3 |
240.0 |
| C5 |
C4 |
C3 |
H3 |
15.7 |
60.0 |
| C5 |
C4 |
C3 |
H3A |
256.9 |
300.0 |
| C3 |
C4 |
C5 |
H4 |
120.0 |
120.0 |
| C3 |
C4 |
C5 |
H4A |
241.7 |
240.0 |
| C4 |
C5 |
C6 |
C7 |
115.2 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
240.0 |
240.0 |
| C6 |
C5 |
C4 |
H5A |
120.6 |
120.0 |
| C4 |
C5 |
C6 |
H6 |
235.2 |
300.0 |
| C4 |
C5 |
C6 |
H6A |
355.7 |
60.0 |
| H4 |
C4 |
C5 |
H4A |
121.7 |
120.0 |
| H5 |
C5 |
C4 |
H5A |
240.6 |
240.0 |
| C6 |
C5 |
C4 |
H4 |
39.2 |
60.0 |
| C6 |
C5 |
C4 |
H4A |
277.6 |
300.0 |
| C4 |
C5 |
C6 |
H5 |
120.0 |
120.0 |
| C4 |
C5 |
C6 |
H5A |
239.4 |
240.0 |
| C7 |
C6 |
C5 |
H6 |
240.0 |
240.0 |
| C7 |
C6 |
C5 |
H6A |
119.5 |
120.0 |
| C5 |
C6 |
C7 |
H7 |
327.9 |
300.0 |
| C5 |
C6 |
C7 |
H7A |
87.9 |
60.0 |
| C5 |
C6 |
C7 |
H7B |
207.9 |
180.0 |
| H5 |
C5 |
C6 |
H5A |
119.4 |
120.0 |
| H6 |
C6 |
C5 |
H6A |
239.6 |
240.1 |
| C7 |
C6 |
C5 |
H5 |
355.2 |
60.0 |
| C7 |
C6 |
C5 |
H5A |
235.8 |
300.0 |
| C5 |
C6 |
C7 |
H6 |
120.0 |
120.0 |
| C5 |
C6 |
C7 |
H6A |
240.4 |
240.0 |
| H6 |
C6 |
C7 |
H6A |
120.4 |
119.9 |
| H7 |
C7 |
C6 |
H7A |
240.0 |
240.0 |
| H7 |
C7 |
C6 |
H7B |
120.0 |
120.0 |
| H7A |
C7 |
C6 |
H7B |
240.0 |
240.0 |
| C1 |
C2 |
H2 |
C3 |
237.7 |
240.0 |
| C1 |
C2 |
H2 |
H2A |
118.8 |
120.0 |
| H2 |
C2 |
C3 |
C4 |
270.0 |
60.0 |
| C3 |
C2 |
H2 |
H2A |
241.1 |
240.0 |
| H2 |
C2 |
C3 |
H3 |
30.0 |
180.0 |
| H2 |
C2 |
C3 |
H3A |
148.7 |
300.0 |
| C1 |
C2 |
H2A |
C3 |
121.6 |
120.0 |
| C1 |
C2 |
H2A |
H2 |
240.8 |
240.0 |
| H2A |
C2 |
C3 |
C4 |
148.8 |
300.0 |
| C3 |
C2 |
H2A |
H2 |
119.2 |
120.0 |
| H2A |
C2 |
C3 |
H3 |
268.7 |
60.0 |
| H2A |
C2 |
C3 |
H3A |
27.5 |
180.0 |
| C2 |
C3 |
H3 |
C4 |
242.7 |
240.0 |
| H3 |
C3 |
C2 |
H2 |
30.0 |
180.0 |
| H3 |
C3 |
C2 |
H2A |
268.7 |
60.0 |
| C2 |
C3 |
H3 |
H3A |
121.3 |
120.0 |
| H3 |
C3 |
C4 |
C5 |
15.7 |
60.0 |
| C4 |
C3 |
H3 |
H3A |
238.7 |
240.0 |
| H3 |
C3 |
C4 |
H4 |
135.7 |
180.0 |
| H3 |
C3 |
C4 |
H4A |
257.4 |
300.0 |
| C2 |
C3 |
H3A |
C4 |
118.2 |
120.0 |
| H3A |
C3 |
C2 |
H2 |
148.7 |
300.0 |
| H3A |
C3 |
C2 |
H2A |
27.5 |
180.0 |
| C2 |
C3 |
H3A |
H3 |
239.1 |
240.0 |
| H3A |
C3 |
C4 |
C5 |
256.9 |
300.0 |
| C4 |
C3 |
H3A |
H3 |
120.9 |
120.0 |
| H3A |
C3 |
C4 |
H4 |
16.9 |
60.0 |
| H3A |
C3 |
C4 |
H4A |
138.6 |
180.0 |
| C3 |
C4 |
H4 |
C5 |
236.8 |
240.0 |
| H4 |
C4 |
C3 |
H3 |
135.7 |
180.0 |
| H4 |
C4 |
C3 |
H3A |
16.9 |
60.0 |
| C3 |
C4 |
H4 |
H4A |
118.5 |
120.0 |
| H4 |
C4 |
C5 |
C6 |
39.2 |
60.0 |
| C5 |
C4 |
H4 |
H4A |
241.6 |
240.0 |
| H4 |
C4 |
C5 |
H5 |
159.2 |
180.0 |
| H4 |
C4 |
C5 |
H5A |
278.7 |
300.0 |
| C3 |
C4 |
H4A |
C5 |
122.1 |
120.0 |
| H4A |
C4 |
C3 |
H3 |
257.4 |
300.0 |
| H4A |
C4 |
C3 |
H3A |
138.6 |
180.0 |
| C3 |
C4 |
H4A |
H4 |
241.0 |
240.0 |
| H4A |
C4 |
C5 |
C6 |
277.6 |
300.0 |
| C5 |
C4 |
H4A |
H4 |
118.9 |
120.0 |
| H4A |
C4 |
C5 |
H5 |
37.6 |
60.0 |
| H4A |
C4 |
C5 |
H5A |
157.0 |
180.0 |
| C4 |
C5 |
H5 |
C6 |
241.2 |
240.0 |
| H5 |
C5 |
C4 |
H4 |
159.2 |
180.0 |
| H5 |
C5 |
C4 |
H4A |
37.6 |
60.0 |
| C4 |
C5 |
H5 |
H5A |
120.6 |
120.0 |
| H5 |
C5 |
C6 |
C7 |
355.2 |
60.0 |
| C6 |
C5 |
H5 |
H5A |
239.4 |
240.0 |
| H5 |
C5 |
C6 |
H6 |
115.2 |
180.0 |
| H5 |
C5 |
C6 |
H6A |
235.7 |
300.0 |
| C4 |
C5 |
H5A |
C6 |
119.2 |
120.0 |
| H5A |
C5 |
C4 |
H4 |
278.7 |
300.0 |
| H5A |
C5 |
C4 |
H4A |
157.0 |
180.0 |
| C4 |
C5 |
H5A |
H5 |
239.6 |
240.0 |
| H5A |
C5 |
C6 |
C7 |
235.8 |
300.0 |
| C6 |
C5 |
H5A |
H5 |
120.4 |
120.0 |
| H5A |
C5 |
C6 |
H6 |
355.8 |
60.0 |
| H5A |
C5 |
C6 |
H6A |
116.2 |
180.0 |
| C5 |
C6 |
H6 |
C7 |
239.1 |
240.0 |
| H6 |
C6 |
C5 |
H5 |
115.2 |
180.0 |
| H6 |
C6 |
C5 |
H5A |
355.8 |
60.0 |
| C5 |
C6 |
H6 |
H6A |
119.6 |
120.0 |
| C7 |
C6 |
H6 |
H6A |
240.5 |
240.0 |
| H6 |
C6 |
C7 |
H7 |
207.8 |
180.0 |
| H6 |
C6 |
C7 |
H7A |
327.9 |
300.0 |
| H6 |
C6 |
C7 |
H7B |
87.9 |
60.0 |
| C5 |
C6 |
H6A |
C7 |
120.6 |
120.0 |
| H6A |
C6 |
C5 |
H5 |
235.7 |
300.0 |
| H6A |
C6 |
C5 |
H5A |
116.2 |
180.0 |
| C5 |
C6 |
H6A |
H6 |
240.3 |
240.0 |
| C7 |
C6 |
H6A |
H6 |
119.7 |
120.0 |
| H6A |
C6 |
C7 |
H7 |
87.4 |
60.0 |
| H6A |
C6 |
C7 |
H7A |
207.5 |
180.0 |
| H6A |
C6 |
C7 |
H7B |
327.5 |
300.0 |
| H7 |
C7 |
C6 |
H6 |
207.8 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
87.4 |
60.0 |
| C6 |
C7 |
H7 |
H7A |
120.0 |
120.0 |
| C6 |
C7 |
H7 |
H7B |
240.0 |
240.0 |
| H7A |
C7 |
H7 |
H7B |
119.9 |
120.0 |
| H7A |
C7 |
C6 |
H6 |
327.9 |
300.0 |
| H7A |
C7 |
C6 |
H6A |
207.5 |
180.0 |
| C6 |
C7 |
H7A |
H7 |
239.9 |
240.0 |
| C6 |
C7 |
H7A |
H7B |
120.0 |
120.0 |
| H7 |
C7 |
H7A |
H7B |
240.1 |
240.0 |
| H7B |
C7 |
C6 |
H6 |
87.9 |
60.0 |
| H7B |
C7 |
C6 |
H6A |
327.5 |
300.0 |
| C6 |
C7 |
H7B |
H7 |
120.0 |
120.0 |
| C6 |
C7 |
H7B |
H7A |
240.0 |
240.0 |
| H7 |
C7 |
H7B |
H7A |
120.0 |
120.0 |