PDB Chemical Component CNU

Ideal Model

Chemical Description

Name 5-CYANO-URIDINE-5'-MONOPHOSPHATE
Synonyms 5-cyano-UMP; 5-cyanouridine 5'-(dihydrogen phosphate)
Formula C10 H12 N3 O9 P
Formal charge 0
Molecular weight 349.191 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms O3P HO3P HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-cyanouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(5-cyano-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C#N)C(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C#N)C(=O)NC2=O
Stereo SMILES (OpenEye) C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C#N
InChI descriptor InChI=1S/C10H12N3O9P/c11-1-4-2-13(10(17)12-8(4)16)9-7(15)6(14)5(22-9)3-21-23(18,19)20/h2,5-7,9,14-15H,3H2,(H,12,16,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1
InChIKey descriptor BUHKUGLYORHFNN-JXOAFFINSA-N

Status Information

Last modified 2020-06-17
Created 2007-12-14
Release status REL
Model PDB code 3BK0
Processing site RCSB