PDB Chemical Component CNU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CNU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1P |
P |
1.502 |
1.480 |
| O2P |
P |
1.529 |
1.610 |
| P |
O5' |
1.608 |
1.610 |
| P |
O3P |
1.503 |
1.610 |
| O2P |
HO2P |
0.950 |
0.967 |
| O3P |
HO3P |
0.950 |
0.966 |
| C5' |
O5' |
1.425 |
1.429 |
| C5' |
C4' |
1.525 |
1.530 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.091 |
| O4' |
C4' |
1.419 |
1.445 |
| C4' |
C3' |
1.521 |
1.545 |
| C4' |
H4' |
1.100 |
1.089 |
| O4' |
C1' |
1.458 |
1.444 |
| C2' |
C3' |
1.529 |
1.545 |
| C3' |
O3' |
1.449 |
1.428 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.951 |
0.967 |
| C1' |
C2' |
1.521 |
1.545 |
| C2' |
O2' |
1.435 |
1.430 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.966 |
| N1 |
C1' |
1.471 |
1.465 |
| C1' |
H1' |
1.100 |
1.090 |
| C2 |
N1 |
1.414 |
1.342 |
| N1 |
C6 |
1.349 |
1.361 |
| N3 |
C2 |
1.362 |
1.345 |
| O2 |
C2 |
1.261 |
1.215 |
| N3 |
C4 |
1.352 |
1.350 |
| N3 |
HN3 |
1.000 |
0.969 |
| O4 |
C4 |
1.268 |
1.217 |
| C4 |
C5 |
1.479 |
1.471 |
| C5 |
C6 |
1.404 |
1.380 |
| C6 |
H6 |
1.080 |
1.080 |
| C5 |
C52 |
1.296 |
1.432 |
| C52 |
N53 |
1.167 |
1.136 |
Bond Angles for CNU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1P |
P |
O5' |
105.3 |
109.4 |
| O1P |
P |
O3P |
118.2 |
109.5 |
| O2P |
P |
O5' |
107.5 |
109.5 |
| O2P |
P |
O3P |
114.7 |
109.5 |
| O3P |
P |
O5' |
97.5 |
109.5 |
| P |
O3P |
HO3P |
109.5 |
114.0 |
| C4' |
C5' |
H5' |
110.3 |
109.5 |
| C4' |
C5' |
H5'A |
110.8 |
109.4 |
| C5' |
C4' |
C3' |
112.9 |
110.4 |
| C5' |
C4' |
H4' |
106.5 |
110.4 |
| H5' |
C5' |
H5'A |
107.7 |
109.4 |
| O4' |
C4' |
C3' |
106.9 |
104.8 |
| O4' |
C4' |
H4' |
112.5 |
110.5 |
| C3' |
C4' |
H4' |
108.9 |
110.4 |
| C4' |
C3' |
O3' |
109.3 |
110.5 |
| C4' |
C3' |
H3' |
115.1 |
110.5 |
| O4' |
C1' |
C2' |
104.4 |
104.8 |
| O4' |
C1' |
H1' |
114.4 |
110.4 |
| C2' |
C3' |
H3' |
112.5 |
110.6 |
| O3' |
C3' |
H3' |
105.7 |
110.5 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C1' |
C2' |
H2' |
112.3 |
110.7 |
| O2' |
C2' |
H2' |
105.4 |
110.4 |
| C2' |
O2' |
HO2' |
109.5 |
114.1 |
| N1 |
C1' |
H1' |
104.2 |
110.4 |
| C2 |
N1 |
C6 |
120.9 |
121.5 |
| N1 |
C6 |
H6 |
119.8 |
120.3 |
| C4 |
N3 |
HN3 |
118.9 |
119.8 |
| N3 |
C4 |
C5 |
118.4 |
118.5 |
| O4 |
C4 |
C5 |
120.1 |
120.8 |
| C4 |
C5 |
C6 |
118.2 |
118.1 |
| C4 |
C5 |
C52 |
121.3 |
120.9 |
| C5 |
C6 |
H6 |
119.8 |
120.4 |
| C5 |
C52 |
N53 |
178.3 |
180.0 |
Torsion Angles for CNU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P |
O1P |
O5' |
116.3 |
120.0 |
| O2P |
P |
O1P |
O3P |
223.8 |
240.0 |
| O3P |
P |
O1P |
O5' |
252.5 |
240.0 |
| O1P |
P |
O3P |
HO3P |
284.0 |
179.9 |
| O1P |
P |
O2P |
O5' |
245.0 |
240.0 |
| O1P |
P |
O2P |
O3P |
137.8 |
120.0 |
| O3P |
P |
O2P |
O5' |
107.3 |
120.0 |
| O2P |
P |
O3P |
HO3P |
58.8 |
299.9 |
| O1P |
P |
O5' |
O3P |
238.0 |
240.0 |
| O2P |
P |
O5' |
O3P |
119.0 |
120.0 |
| O5' |
P |
O3P |
HO3P |
172.1 |
60.0 |
| O1P |
P |
O3P |
O5' |
111.9 |
120.0 |
| O2P |
P |
O3P |
O5' |
246.7 |
240.0 |
| HO2P |
O2P |
P |
O5' |
301.4 |
180.0 |
| HO2P |
O2P |
P |
O3P |
48.7 |
300.0 |
| HO3P |
O3P |
P |
O5' |
172.1 |
60.0 |
| H5' |
C5' |
C4' |
H5'A |
119.1 |
120.0 |
| O4' |
C4' |
C5' |
C3' |
241.2 |
244.7 |
| O4' |
C4' |
C5' |
H4' |
121.8 |
122.4 |
| C3' |
C4' |
C5' |
H4' |
240.6 |
237.7 |
| C5' |
C4' |
C3' |
O3' |
147.5 |
98.6 |
| C5' |
C4' |
C3' |
H3' |
28.7 |
336.0 |
| C4' |
C5' |
H5' |
H5'A |
239.0 |
240.0 |
| H5' |
C5' |
C4' |
C3' |
172.9 |
64.9 |
| H5' |
C5' |
C4' |
H4' |
292.4 |
187.2 |
| C4' |
C5' |
H5'A |
H5' |
120.7 |
120.0 |
| H5'A |
C5' |
C4' |
C3' |
53.8 |
305.0 |
| H5'A |
C5' |
C4' |
H4' |
173.2 |
67.2 |
| O4' |
C4' |
C5' |
H5' |
54.1 |
309.6 |
| O4' |
C4' |
C5' |
H5'A |
295.0 |
189.6 |
| C5' |
C4' |
O4' |
C3' |
122.5 |
118.8 |
| C5' |
C4' |
O4' |
H4' |
242.0 |
237.7 |
| C3' |
C4' |
O4' |
H4' |
119.5 |
118.9 |
| O4' |
C4' |
C3' |
O3' |
267.7 |
217.4 |
| O4' |
C4' |
C3' |
H3' |
148.9 |
94.8 |
| C3' |
C4' |
C5' |
H5' |
172.9 |
64.9 |
| C3' |
C4' |
C5' |
H5'A |
53.8 |
305.0 |
| C5' |
C4' |
C3' |
H4' |
118.0 |
122.3 |
| O4' |
C4' |
C3' |
H4' |
238.2 |
241.0 |
| C2' |
C3' |
C4' |
H3' |
237.7 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
118.8 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
227.6 |
180.0 |
| H4' |
C4' |
C5' |
H5' |
292.4 |
187.2 |
| H4' |
C4' |
C5' |
H5'A |
173.2 |
67.2 |
| C5' |
C4' |
H4' |
C3' |
238.0 |
237.7 |
| O4' |
C4' |
H4' |
C3' |
118.3 |
115.4 |
| H4' |
C4' |
C3' |
O3' |
29.5 |
336.3 |
| H4' |
C4' |
C3' |
H3' |
270.7 |
213.7 |
| C1' |
O4' |
C4' |
C3' |
352.9 |
40.5 |
| C1' |
O4' |
C4' |
H4' |
233.4 |
281.7 |
| O4' |
C1' |
C2' |
H2' |
268.4 |
265.3 |
| N1 |
C1' |
O4' |
H1' |
116.7 |
122.4 |
| C2' |
C3' |
C4' |
H4' |
148.5 |
95.0 |
| C4' |
C3' |
C2' |
H3' |
124.0 |
118.7 |
| O4' |
C1' |
C2' |
C3' |
31.7 |
24.0 |
| O3' |
C3' |
C2' |
H3' |
241.0 |
237.3 |
| C2' |
C3' |
O3' |
HO3' |
115.0 |
65.4 |
| O3' |
C3' |
C4' |
H4' |
29.5 |
336.3 |
| C4' |
C3' |
O3' |
H3' |
235.5 |
237.4 |
| C2' |
C3' |
O3' |
H3' |
122.9 |
122.7 |
| H3' |
C3' |
C4' |
H4' |
270.7 |
213.7 |
| C4' |
C3' |
H3' |
O3' |
120.8 |
122.6 |
| H3' |
C3' |
O3' |
HO3' |
352.1 |
302.6 |
| HO3' |
O3' |
C3' |
H3' |
352.1 |
302.6 |
| O4' |
C1' |
C2' |
H1' |
123.1 |
118.9 |
| C1' |
C2' |
C3' |
H3' |
200.7 |
241.3 |
| O2' |
C2' |
C1' |
H2' |
241.5 |
237.4 |
| C1' |
C2' |
O2' |
HO2' |
262.6 |
183.9 |
| O4' |
C1' |
C2' |
O2' |
149.9 |
142.6 |
| O2' |
C2' |
C3' |
H3' |
81.1 |
122.6 |
| C1' |
C2' |
O2' |
H2' |
122.5 |
122.8 |
| H2' |
C2' |
C3' |
H3' |
322.7 |
0.1 |
| H2' |
C2' |
O2' |
HO2' |
140.1 |
61.1 |
| HO2' |
O2' |
C2' |
H2' |
140.1 |
61.1 |
| O4' |
C1' |
N1 |
H1' |
237.0 |
237.6 |
| N1 |
C1' |
C2' |
H2' |
28.6 |
24.1 |
| O4' |
C1' |
H1' |
C2' |
243.1 |
244.6 |
| H1' |
C1' |
C2' |
H2' |
145.3 |
146.4 |
| C2 |
N1 |
C1' |
H1' |
179.5 |
176.2 |
| C2 |
N1 |
C6 |
H6 |
180.5 |
179.7 |
| C6 |
N1 |
C1' |
H1' |
3.5 |
355.9 |
| C4 |
C5 |
C6 |
N1 |
0.3 |
0.5 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.8 |
| N3 |
C2 |
N1 |
C6 |
358.3 |
0.2 |
| O2 |
C2 |
N1 |
C6 |
179.3 |
180.3 |
| O4 |
C4 |
N3 |
C5 |
180.3 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
360.0 |
359.8 |
| N3 |
C4 |
C5 |
C52 |
179.9 |
180.0 |
| HN3 |
N3 |
C4 |
C5 |
178.9 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
359.1 |
0.0 |
| N3 |
C4 |
O4 |
C5 |
179.7 |
179.9 |
| O4 |
C4 |
C5 |
C6 |
179.7 |
179.7 |
| O4 |
C4 |
C5 |
C52 |
359.7 |
359.9 |
| C5 |
C4 |
N3 |
HN3 |
178.9 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.3 |
180.3 |
| C4 |
C5 |
C52 |
N53 |
5.6 |
266.5 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.2 |
| C4 |
C5 |
C6 |
C52 |
180.0 |
180.2 |
| C4 |
C5 |
C52 |
C6 |
180.0 |
179.8 |
| C52 |
C5 |
C6 |
H6 |
0.3 |
0.1 |