PDB Chemical Component CNT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CNT
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CM |
1.477 |
1.462 |
N |
CA |
1.488 |
1.441 |
N |
H |
1.030 |
1.025 |
CM |
HMC1 |
1.100 |
1.093 |
CM |
HMC2 |
1.100 |
1.094 |
CM |
HMC3 |
1.100 |
1.093 |
CA |
CB |
1.537 |
1.534 |
CA |
C |
1.531 |
1.522 |
CA |
HA |
1.100 |
1.096 |
CB |
CG |
1.522 |
1.510 |
CB |
HBC1 |
1.100 |
1.098 |
CB |
HBC2 |
1.100 |
1.099 |
CG |
CD2 |
1.401 |
1.386 |
CG |
CE1 |
1.406 |
1.386 |
CD2 |
CE2 |
1.399 |
1.395 |
CD2 |
HD2 |
1.061 |
1.088 |
CE2 |
CL |
1.770 |
1.724 |
CE2 |
CZ |
1.408 |
1.395 |
CZ |
OH |
1.360 |
1.363 |
CZ |
CD1 |
1.404 |
1.394 |
OH |
HH |
0.957 |
0.971 |
CD1 |
CE1 |
1.406 |
1.396 |
CD1 |
HD1 |
1.062 |
1.087 |
CE1 |
HE1 |
1.061 |
1.086 |
C |
O |
1.229 |
1.226 |
C |
OXT |
|
1.355 |
OXT |
HXT |
|
0.980 |
Bond Angles for CNT
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CM |
N |
CA |
123.5 |
111.5 |
CM |
N |
H |
105.8 |
108.5 |
N |
CM |
HMC1 |
109.5 |
110.1 |
N |
CM |
HMC2 |
109.5 |
110.2 |
N |
CM |
HMC3 |
109.5 |
110.2 |
CA |
N |
H |
105.9 |
110.1 |
N |
CA |
CB |
109.7 |
111.1 |
N |
CA |
C |
112.3 |
111.1 |
N |
CA |
HA |
107.6 |
106.2 |
HMC1 |
CM |
HMC2 |
109.5 |
108.8 |
HMC1 |
CM |
HMC3 |
109.5 |
108.8 |
HMC2 |
CM |
HMC3 |
109.5 |
108.7 |
CB |
CA |
C |
110.1 |
110.0 |
CB |
CA |
HA |
109.9 |
111.4 |
CA |
CB |
CG |
110.2 |
113.0 |
CA |
CB |
HBC1 |
109.3 |
110.4 |
CA |
CB |
HBC2 |
109.0 |
110.1 |
C |
CA |
HA |
107.2 |
106.9 |
CA |
C |
O |
121.0 |
123.0 |
CA |
C |
OXT |
|
114.8 |
CG |
CB |
HBC1 |
109.3 |
108.1 |
CG |
CB |
HBC2 |
109.1 |
109.7 |
CB |
CG |
CD2 |
119.6 |
119.4 |
CB |
CG |
CE1 |
120.3 |
119.3 |
HBC1 |
CB |
HBC2 |
109.9 |
105.2 |
CD2 |
CG |
CE1 |
120.1 |
121.3 |
CG |
CD2 |
CE2 |
120.0 |
119.3 |
CG |
CD2 |
HD2 |
120.0 |
120.3 |
CG |
CE1 |
CD1 |
120.0 |
119.3 |
CG |
CE1 |
HE1 |
120.0 |
121.2 |
CE2 |
CD2 |
HD2 |
120.0 |
120.4 |
CD2 |
CE2 |
CL |
119.1 |
119.0 |
CD2 |
CE2 |
CZ |
120.2 |
120.0 |
CL |
CE2 |
CZ |
120.7 |
121.0 |
CE2 |
CZ |
OH |
120.3 |
121.2 |
CE2 |
CZ |
CD1 |
119.9 |
120.0 |
OH |
CZ |
CD1 |
119.8 |
118.8 |
CZ |
OH |
HH |
120.0 |
110.1 |
CZ |
CD1 |
CE1 |
119.8 |
120.0 |
CZ |
CD1 |
HD1 |
120.1 |
120.4 |
CE1 |
CD1 |
HD1 |
120.1 |
119.6 |
CD1 |
CE1 |
HE1 |
120.0 |
119.5 |
O |
C |
OXT |
|
122.2 |
C |
OXT |
HXT |
|
114.8 |
Torsion Angles for CNT
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
CM |
H |
238.1 |
121.4 |
CM |
N |
CA |
CB |
286.8 |
176.7 |
CM |
N |
CA |
C |
49.5 |
299.5 |
CM |
N |
CA |
HA |
167.3 |
55.4 |
HMC1 |
CM |
N |
HMC2 |
240.0 |
120.0 |
HMC1 |
CM |
N |
HMC3 |
120.0 |
240.0 |
HMC2 |
CM |
N |
HMC3 |
240.0 |
120.0 |
CM |
N |
CA |
H |
121.9 |
239.5 |
CA |
N |
CM |
HMC1 |
251.5 |
283.8 |
CA |
N |
CM |
HMC2 |
11.5 |
163.8 |
CA |
N |
CM |
HMC3 |
131.5 |
43.8 |
CB |
CA |
N |
C |
237.3 |
237.2 |
CB |
CA |
N |
HA |
119.5 |
121.3 |
N |
CA |
CB |
CG |
296.6 |
201.8 |
N |
CA |
CB |
HBC1 |
56.7 |
323.0 |
N |
CA |
CB |
HBC2 |
176.9 |
78.7 |
C |
CA |
N |
HA |
242.2 |
244.1 |
N |
CA |
C |
O |
236.6 |
325.5 |
N |
CA |
C |
OXT |
|
145.1 |
CM |
N |
H |
CA |
227.4 |
122.3 |
H |
N |
CM |
HMC1 |
13.4 |
162.4 |
H |
N |
CM |
HMC2 |
133.4 |
42.4 |
H |
N |
CM |
HMC3 |
253.4 |
282.4 |
H |
N |
CA |
CB |
164.9 |
297.2 |
H |
N |
CA |
C |
287.6 |
60.0 |
H |
N |
CA |
HA |
45.4 |
175.9 |
HMC1 |
CM |
N |
CA |
251.5 |
283.8 |
HMC1 |
CM |
N |
H |
13.4 |
162.4 |
N |
CM |
HMC1 |
HMC2 |
120.0 |
239.1 |
N |
CM |
HMC1 |
HMC3 |
240.0 |
120.9 |
HMC2 |
CM |
HMC1 |
HMC3 |
120.0 |
241.8 |
HMC2 |
CM |
N |
CA |
11.5 |
163.8 |
HMC2 |
CM |
N |
H |
133.4 |
42.4 |
N |
CM |
HMC2 |
HMC1 |
240.0 |
120.8 |
N |
CM |
HMC2 |
HMC3 |
120.0 |
239.1 |
HMC1 |
CM |
HMC2 |
HMC3 |
240.0 |
118.3 |
HMC3 |
CM |
N |
CA |
131.5 |
43.8 |
HMC3 |
CM |
N |
H |
253.4 |
282.4 |
N |
CM |
HMC3 |
HMC1 |
120.0 |
239.2 |
N |
CM |
HMC3 |
HMC2 |
240.0 |
120.9 |
HMC1 |
CM |
HMC3 |
HMC2 |
120.0 |
241.7 |
CB |
CA |
N |
H |
164.9 |
297.2 |
N |
CA |
CB |
C |
124.0 |
123.5 |
N |
CA |
CB |
HA |
241.9 |
241.8 |
C |
CA |
CB |
HA |
117.9 |
118.4 |
CB |
CA |
C |
O |
359.1 |
89.0 |
CB |
CA |
C |
OXT |
|
268.6 |
CG |
CB |
CA |
HBC1 |
239.9 |
238.8 |
CG |
CB |
CA |
HBC2 |
119.7 |
123.1 |
CA |
CB |
CG |
CD2 |
269.0 |
270.0 |
CA |
CB |
CG |
CE1 |
86.1 |
90.1 |
HBC1 |
CB |
CA |
HBC2 |
239.8 |
244.3 |
C |
CA |
N |
H |
287.6 |
60.0 |
N |
CA |
C |
CB |
237.5 |
236.5 |
N |
CA |
C |
HA |
117.9 |
115.5 |
CB |
CA |
C |
HA |
240.5 |
238.9 |
C |
CA |
CB |
CG |
172.6 |
78.3 |
C |
CA |
CB |
HBC1 |
292.7 |
199.5 |
C |
CA |
CB |
HBC2 |
52.9 |
315.2 |
O |
C |
CA |
OXT |
|
180.4 |
CA |
C |
OXT |
HXT |
|
180.4 |
HA |
CA |
N |
H |
45.4 |
175.9 |
N |
CA |
HA |
CB |
119.4 |
121.1 |
N |
CA |
HA |
C |
239.0 |
241.3 |
CB |
CA |
HA |
C |
119.6 |
120.2 |
HA |
CA |
CB |
CG |
54.7 |
320.0 |
HA |
CA |
CB |
HBC1 |
174.8 |
81.2 |
HA |
CA |
CB |
HBC2 |
295.0 |
196.9 |
HA |
CA |
C |
O |
118.7 |
210.0 |
HA |
CA |
C |
OXT |
|
29.6 |
CG |
CB |
CA |
C |
172.6 |
78.3 |
CG |
CB |
CA |
HA |
54.7 |
320.0 |
CA |
CB |
CG |
HBC1 |
120.1 |
122.5 |
CA |
CB |
CG |
HBC2 |
240.3 |
236.7 |
HBC1 |
CB |
CG |
HBC2 |
120.2 |
114.2 |
CD2 |
CG |
CB |
CE1 |
183.0 |
179.9 |
CB |
CG |
CD2 |
CE2 |
176.6 |
180.1 |
CB |
CG |
CD2 |
HD2 |
356.6 |
0.1 |
CB |
CG |
CE1 |
CD1 |
183.3 |
179.9 |
CB |
CG |
CE1 |
HE1 |
3.3 |
360.0 |
HBC1 |
CB |
CA |
C |
292.7 |
199.5 |
HBC1 |
CB |
CA |
HA |
174.8 |
81.2 |
CA |
CB |
HBC1 |
CG |
239.4 |
236.0 |
CA |
CB |
HBC1 |
HBC2 |
119.7 |
118.8 |
CG |
CB |
HBC1 |
HBC2 |
240.3 |
242.8 |
HBC1 |
CB |
CG |
CD2 |
148.9 |
147.5 |
HBC1 |
CB |
CG |
CE1 |
325.9 |
327.6 |
HBC2 |
CB |
CA |
C |
52.9 |
315.2 |
HBC2 |
CB |
CA |
HA |
295.0 |
196.9 |
CA |
CB |
HBC2 |
CG |
120.4 |
124.9 |
CA |
CB |
HBC2 |
HBC1 |
240.2 |
241.0 |
CG |
CB |
HBC2 |
HBC1 |
119.8 |
116.1 |
HBC2 |
CB |
CG |
CD2 |
28.7 |
33.3 |
HBC2 |
CB |
CG |
CE1 |
205.7 |
213.4 |
CD2 |
CG |
CB |
HBC1 |
148.9 |
147.5 |
CD2 |
CG |
CB |
HBC2 |
28.7 |
33.3 |
CB |
CG |
CD2 |
CE1 |
177.0 |
180.1 |
CD2 |
CG |
CE1 |
CD1 |
0.3 |
0.1 |
CD2 |
CG |
CE1 |
HE1 |
180.3 |
180.1 |
CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
CG |
CD2 |
CE2 |
CL |
181.5 |
180.1 |
CG |
CD2 |
CE2 |
CZ |
0.4 |
0.1 |
CE1 |
CG |
CB |
HBC1 |
325.9 |
327.6 |
CE1 |
CG |
CB |
HBC2 |
205.7 |
213.4 |
CB |
CG |
CE1 |
CD2 |
183.0 |
179.9 |
CE1 |
CG |
CD2 |
CE2 |
359.6 |
359.9 |
CE1 |
CG |
CD2 |
HD2 |
179.6 |
180.0 |
CZ |
CD1 |
CE1 |
CG |
360.0 |
360.0 |
CG |
CE1 |
CD1 |
HD1 |
180.0 |
179.9 |
CD1 |
CE1 |
CG |
HE1 |
180.0 |
180.0 |
CE2 |
CD2 |
CG |
CE1 |
359.6 |
359.9 |
CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
CL |
CE2 |
CD2 |
CZ |
181.2 |
180.1 |
CD2 |
CE2 |
CZ |
OH |
179.8 |
180.0 |
CD2 |
CE2 |
CZ |
CD1 |
359.9 |
359.9 |
HD2 |
CD2 |
CG |
CE1 |
179.6 |
180.0 |
CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
HD2 |
CD2 |
CE2 |
CL |
1.5 |
0.1 |
HD2 |
CD2 |
CE2 |
CZ |
180.4 |
180.0 |
CL |
CE2 |
CD2 |
HD2 |
1.5 |
0.1 |
CD2 |
CE2 |
CL |
CZ |
178.8 |
179.9 |
CL |
CE2 |
CZ |
OH |
358.7 |
359.9 |
CL |
CE2 |
CZ |
CD1 |
178.7 |
179.9 |
CZ |
CE2 |
CD2 |
HD2 |
180.4 |
180.0 |
CD2 |
CE2 |
CZ |
CL |
181.2 |
180.1 |
OH |
CZ |
CE2 |
CD1 |
180.0 |
180.0 |
CE2 |
CZ |
OH |
HH |
0.0 |
347.4 |
CE2 |
CZ |
CD1 |
CE1 |
360.0 |
0.0 |
CE2 |
CZ |
CD1 |
HD1 |
179.9 |
180.1 |
CE2 |
CZ |
OH |
CD1 |
180.0 |
180.0 |
OH |
CZ |
CD1 |
CE1 |
180.0 |
180.0 |
OH |
CZ |
CD1 |
HD1 |
360.0 |
0.0 |
CG |
CE1 |
CD1 |
CZ |
360.0 |
360.0 |
CE2 |
CZ |
CD1 |
OH |
180.0 |
180.0 |
CD1 |
CZ |
OH |
HH |
180.0 |
167.4 |
CE1 |
CD1 |
CZ |
HD1 |
180.0 |
180.0 |
CZ |
CD1 |
CE1 |
HE1 |
180.0 |
179.9 |
HH |
OH |
CZ |
CD1 |
180.0 |
167.4 |
CG |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
CZ |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
CZ |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
HD1 |
CD1 |
CE1 |
HE1 |
360.0 |
359.9 |
CG |
CE1 |
HE1 |
CD1 |
180.0 |
180.0 |
HE1 |
CE1 |
CD1 |
HD1 |
360.0 |
359.9 |
O |
C |
CA |
HA |
118.7 |
210.0 |
CA |
C |
O |
OXT |
|
179.6 |
O |
C |
OXT |
HXT |
|
0.0 |
OXT |
C |
CA |
HA |
|
29.6 |
CA |
C |
OXT |
O |
|
180.4 |