PDB Chemical Component CNT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CNT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CM 1.477 1.462
N CA 1.488 1.441
N H 1.030 1.025
CM HMC1 1.100 1.093
CM HMC2 1.100 1.094
CM HMC3 1.100 1.093
CA CB 1.537 1.534
CA C 1.531 1.522
CA HA 1.100 1.096
CB CG 1.522 1.510
CB HBC1 1.100 1.098
CB HBC2 1.100 1.099
CG CD2 1.401 1.386
CG CE1 1.406 1.386
CD2 CE2 1.399 1.395
CD2 HD2 1.061 1.088
CE2 CL 1.770 1.724
CE2 CZ 1.408 1.395
CZ OH 1.360 1.363
CZ CD1 1.404 1.394
OH HH 0.957 0.971
CD1 CE1 1.406 1.396
CD1 HD1 1.062 1.087
CE1 HE1 1.061 1.086
C O 1.229 1.226
C OXT   1.355
OXT HXT   0.980

Bond Angles for CNT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CM N CA 123.5 111.5
CM N H 105.8 108.5
N CM HMC1 109.5 110.1
N CM HMC2 109.5 110.2
N CM HMC3 109.5 110.2
CA N H 105.9 110.1
N CA CB 109.7 111.1
N CA C 112.3 111.1
N CA HA 107.6 106.2
HMC1 CM HMC2 109.5 108.8
HMC1 CM HMC3 109.5 108.8
HMC2 CM HMC3 109.5 108.7
CB CA C 110.1 110.0
CB CA HA 109.9 111.4
CA CB CG 110.2 113.0
CA CB HBC1 109.3 110.4
CA CB HBC2 109.0 110.1
C CA HA 107.2 106.9
CA C O 121.0 123.0
CA C OXT   114.8
CG CB HBC1 109.3 108.1
CG CB HBC2 109.1 109.7
CB CG CD2 119.6 119.4
CB CG CE1 120.3 119.3
HBC1 CB HBC2 109.9 105.2
CD2 CG CE1 120.1 121.3
CG CD2 CE2 120.0 119.3
CG CD2 HD2 120.0 120.3
CG CE1 CD1 120.0 119.3
CG CE1 HE1 120.0 121.2
CE2 CD2 HD2 120.0 120.4
CD2 CE2 CL 119.1 119.0
CD2 CE2 CZ 120.2 120.0
CL CE2 CZ 120.7 121.0
CE2 CZ OH 120.3 121.2
CE2 CZ CD1 119.9 120.0
OH CZ CD1 119.8 118.8
CZ OH HH 120.0 110.1
CZ CD1 CE1 119.8 120.0
CZ CD1 HD1 120.1 120.4
CE1 CD1 HD1 120.1 119.6
CD1 CE1 HE1 120.0 119.5
O C OXT   122.2
C OXT HXT   114.8

Torsion Angles for CNT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA N CM H 238.1 121.4
CM N CA CB 286.8 176.7
CM N CA C 49.5 299.5
CM N CA HA 167.3 55.4
HMC1 CM N HMC2 240.0 120.0
HMC1 CM N HMC3 120.0 240.0
HMC2 CM N HMC3 240.0 120.0
CM N CA H 121.9 239.5
CA N CM HMC1 251.5 283.8
CA N CM HMC2 11.5 163.8
CA N CM HMC3 131.5 43.8
CB CA N C 237.3 237.2
CB CA N HA 119.5 121.3
N CA CB CG 296.6 201.8
N CA CB HBC1 56.7 323.0
N CA CB HBC2 176.9 78.7
C CA N HA 242.2 244.1
N CA C O 236.6 325.5
N CA C OXT   145.1
CM N H CA 227.4 122.3
H N CM HMC1 13.4 162.4
H N CM HMC2 133.4 42.4
H N CM HMC3 253.4 282.4
H N CA CB 164.9 297.2
H N CA C 287.6 60.0
H N CA HA 45.4 175.9
HMC1 CM N CA 251.5 283.8
HMC1 CM N H 13.4 162.4
N CM HMC1 HMC2 120.0 239.1
N CM HMC1 HMC3 240.0 120.9
HMC2 CM HMC1 HMC3 120.0 241.8
HMC2 CM N CA 11.5 163.8
HMC2 CM N H 133.4 42.4
N CM HMC2 HMC1 240.0 120.8
N CM HMC2 HMC3 120.0 239.1
HMC1 CM HMC2 HMC3 240.0 118.3
HMC3 CM N CA 131.5 43.8
HMC3 CM N H 253.4 282.4
N CM HMC3 HMC1 120.0 239.2
N CM HMC3 HMC2 240.0 120.9
HMC1 CM HMC3 HMC2 120.0 241.7
CB CA N H 164.9 297.2
N CA CB C 124.0 123.5
N CA CB HA 241.9 241.8
C CA CB HA 117.9 118.4
CB CA C O 359.1 89.0
CB CA C OXT   268.6
CG CB CA HBC1 239.9 238.8
CG CB CA HBC2 119.7 123.1
CA CB CG CD2 269.0 270.0
CA CB CG CE1 86.1 90.1
HBC1 CB CA HBC2 239.8 244.3
C CA N H 287.6 60.0
N CA C CB 237.5 236.5
N CA C HA 117.9 115.5
CB CA C HA 240.5 238.9
C CA CB CG 172.6 78.3
C CA CB HBC1 292.7 199.5
C CA CB HBC2 52.9 315.2
O C CA OXT   180.4
CA C OXT HXT   180.4
HA CA N H 45.4 175.9
N CA HA CB 119.4 121.1
N CA HA C 239.0 241.3
CB CA HA C 119.6 120.2
HA CA CB CG 54.7 320.0
HA CA CB HBC1 174.8 81.2
HA CA CB HBC2 295.0 196.9
HA CA C O 118.7 210.0
HA CA C OXT   29.6
CG CB CA C 172.6 78.3
CG CB CA HA 54.7 320.0
CA CB CG HBC1 120.1 122.5
CA CB CG HBC2 240.3 236.7
HBC1 CB CG HBC2 120.2 114.2
CD2 CG CB CE1 183.0 179.9
CB CG CD2 CE2 176.6 180.1
CB CG CD2 HD2 356.6 0.1
CB CG CE1 CD1 183.3 179.9
CB CG CE1 HE1 3.3 360.0
HBC1 CB CA C 292.7 199.5
HBC1 CB CA HA 174.8 81.2
CA CB HBC1 CG 239.4 236.0
CA CB HBC1 HBC2 119.7 118.8
CG CB HBC1 HBC2 240.3 242.8
HBC1 CB CG CD2 148.9 147.5
HBC1 CB CG CE1 325.9 327.6
HBC2 CB CA C 52.9 315.2
HBC2 CB CA HA 295.0 196.9
CA CB HBC2 CG 120.4 124.9
CA CB HBC2 HBC1 240.2 241.0
CG CB HBC2 HBC1 119.8 116.1
HBC2 CB CG CD2 28.7 33.3
HBC2 CB CG CE1 205.7 213.4
CD2 CG CB HBC1 148.9 147.5
CD2 CG CB HBC2 28.7 33.3
CB CG CD2 CE1 177.0 180.1
CD2 CG CE1 CD1 0.3 0.1
CD2 CG CE1 HE1 180.3 180.1
CE2 CD2 CG HD2 180.0 180.0
CG CD2 CE2 CL 181.5 180.1
CG CD2 CE2 CZ 0.4 0.1
CE1 CG CB HBC1 325.9 327.6
CE1 CG CB HBC2 205.7 213.4
CB CG CE1 CD2 183.0 179.9
CE1 CG CD2 CE2 359.6 359.9
CE1 CG CD2 HD2 179.6 180.0
CZ CD1 CE1 CG 360.0 360.0
CG CE1 CD1 HD1 180.0 179.9
CD1 CE1 CG HE1 180.0 180.0
CE2 CD2 CG CE1 359.6 359.9
CG CD2 CE2 HD2 180.0 180.0
CL CE2 CD2 CZ 181.2 180.1
CD2 CE2 CZ OH 179.8 180.0
CD2 CE2 CZ CD1 359.9 359.9
HD2 CD2 CG CE1 179.6 180.0
CG CD2 HD2 CE2 180.0 180.0
HD2 CD2 CE2 CL 1.5 0.1
HD2 CD2 CE2 CZ 180.4 180.0
CL CE2 CD2 HD2 1.5 0.1
CD2 CE2 CL CZ 178.8 179.9
CL CE2 CZ OH 358.7 359.9
CL CE2 CZ CD1 178.7 179.9
CZ CE2 CD2 HD2 180.4 180.0
CD2 CE2 CZ CL 181.2 180.1
OH CZ CE2 CD1 180.0 180.0
CE2 CZ OH HH 0.0 347.4
CE2 CZ CD1 CE1 360.0 0.0
CE2 CZ CD1 HD1 179.9 180.1
CE2 CZ OH CD1 180.0 180.0
OH CZ CD1 CE1 180.0 180.0
OH CZ CD1 HD1 360.0 0.0
CG CE1 CD1 CZ 360.0 360.0
CE2 CZ CD1 OH 180.0 180.0
CD1 CZ OH HH 180.0 167.4
CE1 CD1 CZ HD1 180.0 180.0
CZ CD1 CE1 HE1 180.0 179.9
HH OH CZ CD1 180.0 167.4
CG CE1 CD1 HE1 180.0 180.0
CZ CD1 CE1 HD1 180.0 180.0
CZ CD1 HD1 CE1 180.0 180.0
HD1 CD1 CE1 HE1 360.0 359.9
CG CE1 HE1 CD1 180.0 180.0
HE1 CE1 CD1 HD1 360.0 359.9
O C CA HA 118.7 210.0
CA C O OXT   179.6
O C OXT HXT   0.0
OXT C CA HA   29.6
CA C OXT O   180.4