PDB Chemical Component CNK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CNK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3' |
C3' |
1.430 |
1.429 |
| O4' |
C4' |
1.427 |
1.429 |
| C3' |
C4' |
1.523 |
1.532 |
| C3' |
C2' |
1.532 |
1.532 |
| C4' |
C5' |
1.541 |
1.531 |
| O2' |
C2' |
1.429 |
1.429 |
| C2' |
C1' |
1.531 |
1.531 |
| O6' |
C6' |
1.433 |
1.429 |
| C5' |
C6' |
1.514 |
1.529 |
| C5' |
O5' |
1.443 |
1.429 |
| C1' |
O5' |
1.433 |
1.429 |
| C1' |
C1 |
1.503 |
1.507 |
| N2 |
C1 |
1.344 |
1.306 |
| N2 |
N3 |
1.357 |
1.286 |
| C1 |
N5 |
1.344 |
1.361 |
| N3 |
C4 |
1.326 |
1.315 |
| N5 |
C4 |
1.376 |
1.370 |
| C4 |
C6 |
1.474 |
1.476 |
| C12 |
C13 |
1.366 |
1.363 |
| C12 |
C7 |
1.422 |
1.402 |
| C6 |
C7 |
1.450 |
1.417 |
| C6 |
C11 |
1.391 |
1.386 |
| C13 |
C14 |
1.402 |
1.393 |
| C7 |
C8 |
1.432 |
1.416 |
| C11 |
C10 |
1.406 |
1.390 |
| C14 |
C15 |
1.355 |
1.361 |
| C8 |
C15 |
1.415 |
1.406 |
| C8 |
C9 |
1.414 |
1.406 |
| C10 |
C9 |
1.355 |
1.362 |
| C5' |
H1 |
1.100 |
1.090 |
| C4' |
H2 |
1.100 |
1.090 |
| C3' |
H3 |
1.100 |
1.090 |
| C2' |
H4 |
1.101 |
1.090 |
| C1' |
H5 |
1.100 |
1.089 |
| O2' |
H6 |
0.950 |
0.966 |
| O3' |
H7 |
0.950 |
0.967 |
| O4' |
H8 |
0.950 |
0.967 |
| C6' |
H9 |
1.100 |
1.091 |
| C6' |
H10 |
1.100 |
1.091 |
| O6' |
H11 |
0.950 |
0.967 |
| N5 |
H12 |
1.000 |
0.970 |
| C11 |
H13 |
1.080 |
1.079 |
| C10 |
H14 |
1.081 |
1.081 |
| C9 |
H15 |
1.080 |
1.080 |
| C15 |
H16 |
1.080 |
1.080 |
| C14 |
H17 |
1.080 |
1.080 |
| C13 |
H18 |
1.080 |
1.081 |
| C12 |
H19 |
1.080 |
1.080 |
Bond Angles for CNK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
H3 |
109.5 |
109.6 |
| O4' |
C4' |
H2 |
109.8 |
109.5 |
| C3' |
C4' |
H2 |
108.5 |
109.5 |
| C3' |
C2' |
C1' |
109.1 |
109.1 |
| C2' |
C3' |
H3 |
108.1 |
109.5 |
| C3' |
C2' |
H4 |
108.7 |
109.5 |
| C4' |
C5' |
C6' |
113.3 |
109.5 |
| C4' |
C5' |
H1 |
108.3 |
109.5 |
| O2' |
C2' |
H4 |
110.2 |
109.6 |
| C2' |
C1' |
C1 |
113.8 |
109.5 |
| C1' |
C2' |
H4 |
108.8 |
109.6 |
| C2' |
C1' |
H5 |
107.9 |
109.5 |
| O6' |
C6' |
H9 |
108.7 |
109.5 |
| O6' |
C6' |
H10 |
108.7 |
109.4 |
| C6' |
C5' |
H1 |
108.6 |
109.5 |
| C5' |
C6' |
H9 |
108.7 |
109.5 |
| C5' |
C6' |
H10 |
108.7 |
109.5 |
| C1' |
C1 |
N5 |
125.6 |
126.3 |
| C1 |
C1' |
H5 |
108.2 |
109.5 |
| C1 |
N5 |
C4 |
105.7 |
105.8 |
| C1 |
N5 |
H12 |
127.1 |
127.1 |
| N3 |
C4 |
C6 |
126.4 |
126.6 |
| N5 |
C4 |
C6 |
122.4 |
126.5 |
| C4 |
N5 |
H12 |
127.1 |
127.2 |
| C4 |
C6 |
C7 |
122.6 |
120.3 |
| C4 |
C6 |
C11 |
118.6 |
120.4 |
| C12 |
C13 |
H18 |
119.6 |
119.5 |
| C11 |
C6 |
C7 |
118.8 |
119.3 |
| C6 |
C7 |
C8 |
118.4 |
119.3 |
| C6 |
C11 |
C10 |
121.4 |
120.6 |
| C6 |
C11 |
H13 |
119.3 |
119.7 |
| C13 |
C14 |
H17 |
119.9 |
119.5 |
| C7 |
C8 |
C15 |
119.8 |
119.3 |
| C11 |
C10 |
C9 |
120.7 |
121.2 |
| C10 |
C11 |
H13 |
119.3 |
119.7 |
| C11 |
C10 |
H14 |
119.7 |
119.4 |
| C14 |
C15 |
H16 |
119.5 |
120.2 |
| C8 |
C15 |
H16 |
119.5 |
120.1 |
| C8 |
C9 |
H15 |
119.5 |
119.9 |
| C9 |
C10 |
H14 |
119.7 |
119.4 |
| C10 |
C9 |
H15 |
119.5 |
120.0 |
| H9 |
C6' |
H10 |
109.5 |
109.5 |
Torsion Angles for CNK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
C4' |
H2 |
54.4 |
56.9 |
| C2' |
C3' |
O3' |
H3 |
240.8 |
239.8 |
| O3' |
C3' |
C2' |
H4 |
303.0 |
303.1 |
| C3' |
C4' |
O4' |
H2 |
119.6 |
120.1 |
| O4' |
C4' |
C5' |
C6' |
65.3 |
62.5 |
| O4' |
C4' |
C5' |
H1 |
304.7 |
302.4 |
| O4' |
C4' |
C3' |
H2 |
239.6 |
239.9 |
| C3' |
C4' |
C5' |
C6' |
187.1 |
182.4 |
| C3' |
C4' |
C5' |
H1 |
66.5 |
62.4 |
| O3' |
C3' |
C2' |
H3 |
120.0 |
120.2 |
| C2' |
C3' |
C4' |
H2 |
292.1 |
297.1 |
| O2' |
C2' |
C3' |
H4 |
121.0 |
120.2 |
| C3' |
C2' |
C1' |
C1 |
181.4 |
177.6 |
| C1' |
C2' |
C3' |
H4 |
241.5 |
240.1 |
| C3' |
C2' |
C1' |
H5 |
301.5 |
297.6 |
| C6' |
C5' |
C4' |
H1 |
120.6 |
120.0 |
| C4' |
C5' |
C6' |
H9 |
288.9 |
304.9 |
| C4' |
C5' |
C6' |
H10 |
169.8 |
65.0 |
| O2' |
C2' |
C3' |
H3 |
304.1 |
303.0 |
| C3' |
C2' |
O2' |
H4 |
239.8 |
239.9 |
| C1' |
C2' |
O2' |
H4 |
119.6 |
120.2 |
| O2' |
C2' |
C1' |
H5 |
62.5 |
57.5 |
| C1' |
C2' |
C3' |
H3 |
64.6 |
62.9 |
| C3' |
C2' |
C1' |
H4 |
118.5 |
119.9 |
| O2' |
C2' |
C1' |
H4 |
239.5 |
239.8 |
| C2' |
C1' |
C1 |
N5 |
145.8 |
125.0 |
| C1 |
C1' |
C2' |
H5 |
240.0 |
239.9 |
| O6' |
C6' |
C5' |
H1 |
169.7 |
305.0 |
| C5' |
C6' |
O6' |
H9 |
239.5 |
120.0 |
| C5' |
C6' |
O6' |
H10 |
120.5 |
240.0 |
| H9 |
C6' |
O6' |
H10 |
240.9 |
119.9 |
| C4' |
C5' |
C6' |
H1 |
239.6 |
240.0 |
| O6' |
C6' |
C5' |
H9 |
120.4 |
240.0 |
| O6' |
C6' |
C5' |
H10 |
239.6 |
120.0 |
| H9 |
C6' |
C5' |
H10 |
119.1 |
240.0 |
| C1 |
C1' |
C2' |
H4 |
63.0 |
57.7 |
| C2' |
C1' |
C1 |
H5 |
119.9 |
120.0 |
| C1' |
C1 |
N5 |
C4 |
179.6 |
180.0 |
| C1' |
C1 |
N5 |
H12 |
359.6 |
0.0 |
| N2 |
C1 |
C1' |
H5 |
204.8 |
184.7 |
| N2 |
C1 |
N5 |
H12 |
180.6 |
180.3 |
| N2 |
N3 |
C4 |
C6 |
178.0 |
179.8 |
| N5 |
C1 |
C1' |
H5 |
26.0 |
5.0 |
| C1 |
N5 |
C4 |
C6 |
182.0 |
180.0 |
| C4 |
N5 |
C1 |
H12 |
180.0 |
180.0 |
| N5 |
C4 |
N3 |
C6 |
183.4 |
179.9 |
| N3 |
C4 |
N5 |
H12 |
178.8 |
180.0 |
| N3 |
C4 |
C6 |
C7 |
22.1 |
353.8 |
| N3 |
C4 |
C6 |
C11 |
202.9 |
174.2 |
| C1 |
N5 |
C4 |
H12 |
180.0 |
180.0 |
| N3 |
C4 |
N5 |
C6 |
176.8 |
180.1 |
| N5 |
C4 |
C6 |
C7 |
198.4 |
173.9 |
| N5 |
C4 |
C6 |
C11 |
19.1 |
354.2 |
| C6 |
C4 |
N5 |
H12 |
2.0 |
359.9 |
| C11 |
C6 |
C4 |
C7 |
180.8 |
180.4 |
| C4 |
C6 |
C7 |
C8 |
180.4 |
179.8 |
| C4 |
C6 |
C11 |
C10 |
179.6 |
179.9 |
| C4 |
C6 |
C11 |
H13 |
359.6 |
359.9 |
| C12 |
C13 |
C14 |
H17 |
178.8 |
179.4 |
| C4 |
C6 |
C7 |
C11 |
180.8 |
180.3 |
| C7 |
C6 |
C11 |
C10 |
0.4 |
0.3 |
| C7 |
C6 |
C11 |
H13 |
180.3 |
180.3 |
| C6 |
C7 |
C8 |
C15 |
180.5 |
180.3 |
| C4 |
C6 |
C11 |
C7 |
179.2 |
179.7 |
| C11 |
C6 |
C7 |
C8 |
359.6 |
359.4 |
| C6 |
C11 |
C10 |
C9 |
359.5 |
0.0 |
| C10 |
C11 |
C6 |
H13 |
180.0 |
180.0 |
| C6 |
C11 |
C10 |
H14 |
179.5 |
180.0 |
| C13 |
C14 |
C15 |
H16 |
180.5 |
180.0 |
| C7 |
C8 |
C15 |
H16 |
180.3 |
180.3 |
| C7 |
C8 |
C9 |
H15 |
179.3 |
179.7 |
| C10 |
C11 |
C6 |
C7 |
0.4 |
0.3 |
| C6 |
C11 |
C10 |
H13 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H14 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H15 |
180.7 |
180.0 |
| C8 |
C15 |
C14 |
H16 |
180.0 |
180.0 |
| C14 |
C15 |
C8 |
H16 |
180.0 |
180.0 |
| C15 |
C8 |
C9 |
H15 |
359.4 |
0.0 |
| C6 |
C7 |
C8 |
C9 |
0.5 |
0.6 |
| C8 |
C9 |
C10 |
H14 |
180.6 |
180.1 |
| C10 |
C9 |
C8 |
H15 |
180.0 |
179.9 |
| C9 |
C10 |
C11 |
H13 |
179.5 |
180.0 |
| C11 |
C10 |
C9 |
H14 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
H15 |
180.0 |
180.1 |
| C4' |
C5' |
H1 |
C6' |
123.5 |
120.0 |
| H1 |
C5' |
C6' |
H9 |
49.3 |
65.0 |
| H1 |
C5' |
C6' |
H10 |
290.2 |
185.0 |
| H2 |
C4' |
C5' |
C6' |
306.1 |
302.3 |
| H2 |
C4' |
C5' |
H1 |
185.5 |
182.3 |
| H3 |
C3' |
C4' |
H2 |
173.6 |
177.2 |
| H3 |
C3' |
C2' |
C1' |
64.6 |
62.9 |
| H3 |
C3' |
C2' |
H4 |
183.1 |
182.8 |
| C3' |
C2' |
H4 |
C1' |
241.3 |
240.3 |
| H4 |
C2' |
C3' |
H3 |
183.1 |
182.8 |
| H4 |
C2' |
C1' |
C1 |
63.0 |
57.7 |
| H4 |
C2' |
C1' |
H5 |
183.0 |
177.7 |
| C2' |
C1' |
H5 |
C1 |
236.5 |
240.0 |
| H5 |
C1' |
C2' |
H4 |
183.0 |
177.7 |
| H5 |
C1' |
C1 |
N5 |
26.0 |
5.0 |
| H6 |
O2' |
C2' |
H4 |
300.2 |
60.1 |
| H7 |
O3' |
C3' |
H3 |
61.5 |
59.7 |
| H8 |
O4' |
C4' |
H2 |
60.4 |
300.1 |
| O6' |
C6' |
H9 |
H10 |
118.6 |
240.1 |
| H9 |
C6' |
C5' |
H1 |
49.3 |
65.0 |
| C5' |
C6' |
H9 |
H10 |
241.4 |
120.1 |
| O6' |
C6' |
H10 |
H9 |
241.4 |
120.0 |
| H10 |
C6' |
C5' |
H1 |
290.2 |
185.0 |
| C5' |
C6' |
H10 |
H9 |
118.6 |
240.0 |
| H11 |
O6' |
C6' |
H9 |
300.5 |
60.0 |
| H11 |
O6' |
C6' |
H10 |
59.6 |
300.0 |
| C1 |
N5 |
H12 |
C4 |
180.0 |
179.9 |
| H12 |
N5 |
C4 |
C6 |
2.0 |
359.9 |
| H13 |
C11 |
C6 |
C7 |
180.3 |
180.3 |
| C6 |
C11 |
H13 |
C10 |
180.0 |
180.0 |
| H13 |
C11 |
C10 |
C9 |
179.5 |
180.0 |
| H13 |
C11 |
C10 |
H14 |
359.5 |
360.0 |
| C11 |
C10 |
H14 |
C9 |
180.0 |
180.0 |
| H14 |
C10 |
C11 |
H13 |
359.5 |
360.0 |
| H14 |
C10 |
C9 |
H15 |
0.6 |
360.0 |
| H15 |
C9 |
C10 |
H14 |
0.6 |
360.0 |
| H17 |
C14 |
C15 |
H16 |
0.5 |
360.0 |
| H18 |
C13 |
C14 |
H17 |
358.8 |
360.0 |
| H19 |
C12 |
C13 |
H18 |
1.1 |
359.4 |