PDB Chemical Component CMY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CMY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O1Y C1Y 1.239 1.361
O1Y H1Y 0.950 0.981
C1Y N1Y 1.485 1.380
C1Y O1   1.225
N1Y C2Y 1.483 1.437
N1Y H1 1.000 1.019
C2Y C3Y 1.517 1.526
C2Y H2Y1 1.100 1.094
C2Y H2Y2 1.100 1.095
C3Y C4Y 1.524 1.533
C3Y H3Y1 1.100 1.097
C3Y H3Y2 1.100 1.098
C4Y C5Y 1.503 1.531
C4Y H4Y1 1.101 1.098
C4Y H4Y2 1.100 1.096
C5Y C6Y 1.528 1.533
C5Y H5Y1 1.100 1.096
C5Y H5Y2 1.100 1.096
C6Y C7Y 1.510 1.525
C6Y H6Y1 1.100 1.097
C6Y H6Y2 1.100 1.097
C7Y N2Y 1.471 1.437
C7Y H7Y1 1.100 1.095
C7Y H7Y2 1.100 1.095
N2Y H11 1.001 1.008
N2Y H12 1.000 1.008

Bond Angles for CMY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1Y O1Y H1Y 109.5 111.8
O1Y C1Y N1Y 125.9 110.9
O1Y C1Y O1   122.4
N1Y C1Y O1   126.8
C1Y N1Y C2Y 117.1 123.8
C1Y N1Y H1 121.5 118.1
C2Y N1Y H1 121.5 118.1
N1Y C2Y C3Y 113.8 112.6
N1Y C2Y H2Y1 107.1 107.9
N1Y C2Y H2Y2 108.1 106.8
C3Y C2Y H2Y1 107.1 111.8
C3Y C2Y H2Y2 108.0 109.8
C2Y C3Y C4Y 104.9 114.9
C2Y C3Y H3Y1 112.0 108.7
C2Y C3Y H3Y2 111.0 108.9
H2Y1 C2Y H2Y2 112.9 107.6
C4Y C3Y H3Y1 112.0 109.2
C4Y C3Y H3Y2 111.0 108.2
C3Y C4Y C5Y 111.1 113.4
C3Y C4Y H4Y1 108.6 107.9
C3Y C4Y H4Y2 108.9 110.0
H3Y1 C3Y H3Y2 106.0 106.6
C5Y C4Y H4Y1 108.5 109.0
C5Y C4Y H4Y2 109.0 109.8
C4Y C5Y C6Y 106.8 111.1
C4Y C5Y H5Y1 110.9 109.6
C4Y C5Y H5Y2 110.4 109.8
H4Y1 C4Y H4Y2 110.8 106.5
C6Y C5Y H5Y1 110.9 109.5
C6Y C5Y H5Y2 110.4 109.3
C5Y C6Y C7Y 109.4 112.5
C5Y C6Y H6Y1 109.5 109.2
C5Y C6Y H6Y2 109.5 109.6
H5Y1 C5Y H5Y2 107.4 107.3
C7Y C6Y H6Y1 109.5 108.5
C7Y C6Y H6Y2 109.5 109.8
C6Y C7Y N2Y 108.7 112.6
C6Y C7Y H7Y1 109.9 111.0
C6Y C7Y H7Y2 109.7 110.1
H6Y1 C6Y H6Y2 109.5 107.1
N2Y C7Y H7Y1 109.9 107.8
N2Y C7Y H7Y2 109.7 106.9
C7Y N2Y H11 109.4 119.2
C7Y N2Y H12 109.5 119.2
H7Y1 C7Y H7Y2 108.9 108.1
H11 N2Y H12 109.5 120.2

Torsion Angles for CMY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1Y C1Y O1Y O1   180.0
O1Y C1Y N1Y C2Y 0.6 180.0
O1Y C1Y N1Y H1 180.6 360.0
H1Y O1Y C1Y N1Y 78.5 180.0
H1Y O1Y C1Y O1   0.0
N1Y C1Y O1Y H1Y 78.5 180.0
O1Y C1Y N1Y O1   180.0
C2Y N1Y C1Y H1 180.0 180.0
C1Y N1Y C2Y C3Y 61.8 90.0
C1Y N1Y C2Y H2Y1 303.6 326.2
C1Y N1Y C2Y H2Y2 181.8 210.6
O1 C1Y O1Y H1Y   0.0
O1Y C1Y O1 N1Y   180.0
O1 C1Y N1Y C2Y   360.0
O1 C1Y N1Y H1   180.0
C2Y N1Y C1Y O1   360.0
C1Y N1Y C2Y H1 180.0 180.0
C3Y C2Y N1Y H2Y1 118.1 123.9
C3Y C2Y N1Y H2Y2 240.0 239.4
N1Y C2Y C3Y C4Y 178.7 58.3
N1Y C2Y C3Y H3Y1 57.0 295.6
N1Y C2Y C3Y H3Y2 298.7 179.8
H2Y1 C2Y N1Y H2Y2 121.9 115.5
H1 N1Y C1Y O1   180.0
C1Y N1Y H1 C2Y 180.0 180.0
H1 N1Y C2Y C3Y 241.8 270.0
H1 N1Y C2Y H2Y1 123.7 146.2
H1 N1Y C2Y H2Y2 1.8 30.6
C3Y C2Y N1Y H1 241.8 270.0
N1Y C2Y C3Y H2Y1 241.9 238.3
N1Y C2Y C3Y H2Y2 120.0 118.9
H2Y1 C2Y C3Y H2Y2 238.2 240.6
C4Y C3Y C2Y H3Y1 121.7 122.7
C4Y C3Y C2Y H3Y2 240.0 238.5
C2Y C3Y C4Y C5Y 181.2 177.5
C2Y C3Y C4Y H4Y1 61.9 56.7
C2Y C3Y C4Y H4Y2 301.2 300.9
H3Y1 C3Y C2Y H3Y2 118.3 115.8
H2Y1 C2Y N1Y H1 123.7 146.2
N1Y C2Y H2Y1 C3Y 122.4 124.4
N1Y C2Y H2Y1 H2Y2 241.2 245.0
C3Y C2Y H2Y1 H2Y2 118.8 120.6
H2Y1 C2Y C3Y C4Y 296.8 180.0
H2Y1 C2Y C3Y H3Y1 175.1 57.3
H2Y1 C2Y C3Y H3Y2 56.8 301.5
H2Y2 C2Y N1Y H1 1.8 30.6
N1Y C2Y H2Y2 C3Y 236.5 237.6
N1Y C2Y H2Y2 H2Y1 118.3 115.7
C3Y C2Y H2Y2 H2Y1 241.8 238.1
H2Y2 C2Y C3Y C4Y 58.7 299.4
H2Y2 C2Y C3Y H3Y1 297.0 176.7
H2Y2 C2Y C3Y H3Y2 178.7 60.9
C4Y C3Y C2Y H2Y1 296.8 180.0
C4Y C3Y C2Y H2Y2 58.7 299.4
C2Y C3Y C4Y H3Y1 238.3 237.6
C2Y C3Y C4Y H3Y2 120.0 121.9
H3Y1 C3Y C4Y H3Y2 241.7 244.4
C5Y C4Y C3Y H4Y1 119.3 120.8
C5Y C4Y C3Y H4Y2 240.0 236.6
C3Y C4Y C5Y C6Y 179.4 179.7
C3Y C4Y C5Y H5Y1 58.4 300.9
C3Y C4Y C5Y H5Y2 299.4 58.6
H4Y1 C4Y C3Y H4Y2 120.7 115.8
H3Y1 C3Y C2Y H2Y1 175.1 57.3
H3Y1 C3Y C2Y H2Y2 297.0 176.7
C2Y C3Y H3Y1 C4Y 117.5 126.1
C2Y C3Y H3Y1 H3Y2 238.8 242.7
C4Y C3Y H3Y1 H3Y2 121.2 116.6
H3Y1 C3Y C4Y C5Y 302.9 300.0
H3Y1 C3Y C4Y H4Y1 183.6 179.1
H3Y1 C3Y C4Y H4Y2 63.0 63.3
H3Y2 C3Y C2Y H2Y1 56.8 301.5
H3Y2 C3Y C2Y H2Y2 178.7 60.9
C2Y C3Y H3Y2 C4Y 243.7 234.5
C2Y C3Y H3Y2 H3Y1 121.9 117.2
C4Y C3Y H3Y2 H3Y1 238.1 242.7
H3Y2 C3Y C4Y C5Y 61.2 55.6
H3Y2 C3Y C4Y H4Y1 301.9 294.8
H3Y2 C3Y C4Y H4Y2 181.2 179.0
C5Y C4Y C3Y H3Y1 302.9 300.0
C5Y C4Y C3Y H3Y2 61.2 55.6
C3Y C4Y C5Y H4Y1 240.7 239.8
C3Y C4Y C5Y H4Y2 120.0 123.5
H4Y1 C4Y C5Y H4Y2 239.3 243.7
C6Y C5Y C4Y H5Y1 121.0 238.8
C6Y C5Y C4Y H5Y2 240.0 121.1
C4Y C5Y C6Y C7Y 180.8 180.5
C4Y C5Y C6Y H6Y1 60.8 60.0
C4Y C5Y C6Y H6Y2 300.8 303.0
H5Y1 C5Y C4Y H5Y2 119.0 242.3
H4Y1 C4Y C3Y H3Y1 183.6 179.1
H4Y1 C4Y C3Y H3Y2 301.9 294.8
C3Y C4Y H4Y1 C5Y 120.9 123.6
C3Y C4Y H4Y1 H4Y2 240.5 241.9
C5Y C4Y H4Y1 H4Y2 119.6 118.4
H4Y1 C4Y C5Y C6Y 298.7 299.9
H4Y1 C4Y C5Y H5Y1 177.7 61.1
H4Y1 C4Y C5Y H5Y2 58.8 178.8
H4Y2 C4Y C3Y H3Y1 63.0 63.3
H4Y2 C4Y C3Y H3Y2 181.2 179.0
C3Y C4Y H4Y2 C5Y 238.6 234.5
C3Y C4Y H4Y2 H4Y1 119.3 116.7
C5Y C4Y H4Y2 H4Y1 240.7 242.2
H4Y2 C4Y C5Y C6Y 59.4 56.2
H4Y2 C4Y C5Y H5Y1 298.4 177.4
H4Y2 C4Y C5Y H5Y2 179.4 295.1
C6Y C5Y C4Y H4Y1 298.7 299.9
C6Y C5Y C4Y H4Y2 59.4 56.2
C4Y C5Y C6Y H5Y1 239.0 121.2
C4Y C5Y C6Y H5Y2 120.0 238.6
H5Y1 C5Y C6Y H5Y2 241.0 117.4
C7Y C6Y C5Y H6Y1 120.0 120.5
C7Y C6Y C5Y H6Y2 240.0 237.5
C5Y C6Y C7Y N2Y 60.1 181.0
C5Y C6Y C7Y H7Y1 299.8 60.0
C5Y C6Y C7Y H7Y2 180.1 300.3
H6Y1 C6Y C5Y H6Y2 120.0 117.0
H5Y1 C5Y C4Y H4Y1 177.7 61.1
H5Y1 C5Y C4Y H4Y2 298.4 177.4
C4Y C5Y H5Y1 C6Y 118.6 237.9
C4Y C5Y H5Y1 H5Y2 239.3 119.2
C6Y C5Y H5Y1 H5Y2 120.7 241.4
H5Y1 C5Y C6Y C7Y 301.8 59.3
H5Y1 C5Y C6Y H6Y1 181.8 298.8
H5Y1 C5Y C6Y H6Y2 61.8 181.8
H5Y2 C5Y C4Y H4Y1 58.8 178.8
H5Y2 C5Y C4Y H4Y2 179.4 295.1
C4Y C5Y H5Y2 C6Y 242.1 122.2
C4Y C5Y H5Y2 H5Y1 121.1 240.9
C6Y C5Y H5Y2 H5Y1 238.9 118.8
H5Y2 C5Y C6Y C7Y 60.8 301.9
H5Y2 C5Y C6Y H6Y1 300.8 181.4
H5Y2 C5Y C6Y H6Y2 180.8 64.4
C7Y C6Y C5Y H5Y1 301.8 59.3
C7Y C6Y C5Y H5Y2 60.8 301.9
C5Y C6Y C7Y H6Y1 240.0 239.1
C5Y C6Y C7Y H6Y2 120.0 122.4
H6Y1 C6Y C7Y H6Y2 240.0 243.3
N2Y C7Y C6Y H7Y1 120.3 121.0
N2Y C7Y C6Y H7Y2 240.0 240.8
C6Y C7Y N2Y H11 345.5 311.6
C6Y C7Y N2Y H12 225.5 145.0
H7Y1 C7Y C6Y H7Y2 119.7 119.7
H6Y1 C6Y C5Y H5Y1 181.8 298.8
H6Y1 C6Y C5Y H5Y2 300.8 181.4
C5Y C6Y H6Y1 C7Y 120.0 122.9
C5Y C6Y H6Y1 H6Y2 240.0 241.4
C7Y C6Y H6Y1 H6Y2 120.0 118.5
H6Y1 C6Y C7Y N2Y 180.1 301.9
H6Y1 C6Y C7Y H7Y1 59.9 180.9
H6Y1 C6Y C7Y H7Y2 300.1 61.2
H6Y2 C6Y C5Y H5Y1 61.8 181.8
H6Y2 C6Y C5Y H5Y2 180.8 64.4
C5Y C6Y H6Y2 C7Y 240.0 235.9
C5Y C6Y H6Y2 H6Y1 120.0 118.3
C7Y C6Y H6Y2 H6Y1 240.0 242.4
H6Y2 C6Y C7Y N2Y 300.1 58.7
H6Y2 C6Y C7Y H7Y1 179.9 297.6
H6Y2 C6Y C7Y H7Y2 60.1 177.9
N2Y C7Y C6Y H6Y1 180.1 301.9
N2Y C7Y C6Y H6Y2 300.1 58.7
C6Y C7Y N2Y H7Y1 239.7 237.1
C6Y C7Y N2Y H7Y2 120.0 121.0
H7Y1 C7Y N2Y H7Y2 240.3 243.9
H11 N2Y C7Y H12 120.0 166.6
H7Y1 C7Y C6Y H6Y1 59.9 180.9
H7Y1 C7Y C6Y H6Y2 179.9 297.6
C6Y C7Y H7Y1 N2Y 119.6 123.8
C6Y C7Y H7Y1 H7Y2 239.8 239.1
N2Y C7Y H7Y1 H7Y2 120.2 115.3
H7Y1 C7Y N2Y H11 105.8 74.5
H7Y1 C7Y N2Y H12 345.8 267.9
H7Y2 C7Y C6Y H6Y1 300.1 61.2
H7Y2 C7Y C6Y H6Y2 60.1 177.9
C6Y C7Y H7Y2 N2Y 240.6 237.3
C6Y C7Y H7Y2 H7Y1 120.3 121.4
N2Y C7Y H7Y2 H7Y1 239.7 244.1
H7Y2 C7Y N2Y H11 225.5 190.6
H7Y2 C7Y N2Y H12 105.5 24.0
H11 N2Y C7Y H7Y1 105.8 74.5
H11 N2Y C7Y H7Y2 225.5 190.6
C7Y N2Y H11 H12 240.0 193.5
H12 N2Y C7Y H7Y1 345.8 267.9
H12 N2Y C7Y H7Y2 105.5 24.0
C7Y N2Y H12 H11 120.0 166.5