PDB Chemical Component CML
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CML
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.227 |
1.208 |
| O1 |
C1 |
1.259 |
1.208 |
| C1 |
O2 |
1.252 |
1.342 |
| C1 |
C2 |
1.516 |
1.507 |
| C2 |
SG |
1.847 |
1.814 |
| C2 |
C3 |
1.511 |
1.531 |
| C |
OXT |
1.329 |
1.343 |
| C |
CA |
1.523 |
1.508 |
| SG |
CB |
1.823 |
1.814 |
| CB |
CA |
1.528 |
1.530 |
| C3 |
C4 |
1.523 |
1.507 |
| CA |
N |
1.458 |
1.468 |
| O5 |
C4 |
1.261 |
1.209 |
| C4 |
O4 |
1.246 |
1.343 |
| C3 |
H31 |
1.100 |
1.090 |
| C3 |
H32 |
1.100 |
1.090 |
| C2 |
H1 |
1.100 |
1.090 |
| CB |
HB1 |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.089 |
| CA |
HA |
1.100 |
1.090 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.010 |
| O2 |
HO2 |
0.950 |
0.967 |
| O4 |
HO4 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for CML
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
122.7 |
120.0 |
| O1 |
C1 |
O2 |
125.2 |
120.0 |
| C1 |
O2 |
HO2 |
109.5 |
117.1 |
| C1 |
C2 |
SG |
111.4 |
109.5 |
| C1 |
C2 |
H1 |
108.9 |
109.5 |
| C2 |
SG |
CB |
98.1 |
103.0 |
| SG |
C2 |
H1 |
107.3 |
109.5 |
| C2 |
C3 |
H31 |
108.7 |
109.4 |
| C2 |
C3 |
H32 |
108.1 |
109.4 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| C |
CA |
N |
110.9 |
109.4 |
| C |
CA |
HA |
109.5 |
109.5 |
| SG |
CB |
CA |
115.1 |
109.4 |
| SG |
CB |
HB1 |
107.6 |
109.5 |
| SG |
CB |
HB2 |
106.3 |
109.4 |
| CB |
CA |
N |
112.9 |
109.5 |
| CA |
CB |
HB1 |
107.6 |
109.5 |
| CA |
CB |
HB2 |
106.3 |
109.5 |
| CB |
CA |
HA |
107.4 |
109.5 |
| N |
CA |
HA |
106.1 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| O5 |
C4 |
O4 |
125.5 |
120.0 |
| C4 |
O4 |
HO4 |
109.5 |
117.0 |
| H31 |
C3 |
H32 |
111.4 |
109.5 |
| HB1 |
CB |
HB2 |
114.0 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
Torsion Angles for CML
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| O |
C |
CA |
N |
166.9 |
340.0 |
| O |
C |
CA |
HA |
50.1 |
220.0 |
| O1 |
C1 |
O2 |
HO2 |
360.0 |
360.0 |
| O1 |
C1 |
C2 |
SG |
15.5 |
110.0 |
| O1 |
C1 |
C2 |
H1 |
257.4 |
350.0 |
| O2 |
C1 |
C2 |
SG |
195.7 |
290.0 |
| O2 |
C1 |
C2 |
H1 |
77.6 |
170.0 |
| C1 |
C2 |
SG |
CB |
167.2 |
295.0 |
| SG |
C2 |
C1 |
H1 |
118.1 |
120.0 |
| C1 |
C2 |
C3 |
H31 |
54.3 |
55.0 |
| C1 |
C2 |
C3 |
H32 |
175.3 |
295.0 |
| C1 |
C2 |
SG |
H1 |
240.9 |
240.0 |
| SG |
C2 |
C3 |
H31 |
176.9 |
175.0 |
| SG |
C2 |
C3 |
H32 |
297.9 |
55.0 |
| C2 |
SG |
CB |
CA |
176.4 |
180.0 |
| C2 |
SG |
CB |
HB1 |
296.5 |
300.0 |
| C2 |
SG |
CB |
HB2 |
59.0 |
60.0 |
| H31 |
C3 |
C2 |
H32 |
239.0 |
120.0 |
| OXT |
C |
CA |
N |
346.8 |
160.0 |
| OXT |
C |
CA |
HA |
229.9 |
39.9 |
| CB |
CA |
C |
N |
125.5 |
120.0 |
| C |
CA |
CB |
HB1 |
186.0 |
60.0 |
| C |
CA |
CB |
HB2 |
63.4 |
300.0 |
| CB |
CA |
C |
HA |
242.3 |
240.0 |
| N |
CA |
C |
HA |
116.8 |
120.0 |
| C |
CA |
N |
H |
230.7 |
296.0 |
| C |
CA |
N |
H2 |
350.7 |
60.0 |
| CB |
SG |
C2 |
H1 |
286.3 |
55.0 |
| SG |
CB |
CA |
N |
70.3 |
300.0 |
| CA |
CB |
SG |
HB1 |
240.0 |
240.0 |
| CA |
CB |
SG |
HB2 |
117.4 |
120.0 |
| SG |
CB |
CA |
HA |
187.0 |
60.0 |
| HB1 |
CB |
SG |
HB2 |
237.5 |
240.0 |
| C |
CA |
CB |
N |
235.7 |
240.1 |
| C |
CA |
CB |
HA |
119.0 |
120.0 |
| SG |
CB |
CA |
HB1 |
120.0 |
120.0 |
| SG |
CB |
CA |
HB2 |
242.5 |
240.0 |
| N |
CA |
CB |
HA |
243.3 |
240.0 |
| CB |
CA |
N |
H |
107.0 |
176.0 |
| CB |
CA |
N |
H2 |
227.0 |
300.1 |
| HB1 |
CB |
CA |
HB2 |
122.5 |
120.1 |
| C3 |
C4 |
O4 |
HO4 |
179.9 |
180.3 |
| C |
CA |
N |
HA |
241.1 |
240.0 |
| N |
CA |
CB |
HB1 |
310.3 |
180.0 |
| N |
CA |
CB |
HB2 |
187.8 |
59.9 |
| CB |
CA |
N |
HA |
117.4 |
120.0 |
| H |
N |
CA |
H2 |
240.0 |
235.9 |
| O5 |
C4 |
O4 |
HO4 |
0.0 |
0.0 |
| C2 |
C3 |
H31 |
H32 |
119.0 |
240.0 |
| C2 |
C3 |
H32 |
H31 |
240.7 |
120.0 |
| C1 |
C2 |
H1 |
SG |
120.7 |
120.0 |
| H1 |
C2 |
SG |
CB |
286.3 |
55.0 |
| H1 |
C2 |
C3 |
H31 |
295.1 |
295.0 |
| H1 |
C2 |
C3 |
H32 |
56.1 |
175.0 |
| SG |
CB |
HB1 |
CA |
235.3 |
240.0 |
| SG |
CB |
HB1 |
HB2 |
117.7 |
120.0 |
| HB1 |
CB |
CA |
N |
310.3 |
180.0 |
| CA |
CB |
HB1 |
HB2 |
242.3 |
239.9 |
| HB1 |
CB |
CA |
HA |
67.0 |
300.0 |
| SG |
CB |
HB2 |
CA |
123.2 |
120.0 |
| SG |
CB |
HB2 |
HB1 |
241.6 |
240.0 |
| HB2 |
CB |
CA |
N |
187.8 |
59.9 |
| CA |
CB |
HB2 |
HB1 |
118.4 |
120.0 |
| HB2 |
CB |
CA |
HA |
304.5 |
180.0 |
| C |
CA |
HA |
N |
119.8 |
120.0 |
| CB |
CA |
HA |
N |
239.0 |
240.0 |
| HA |
CA |
CB |
HB1 |
67.0 |
300.0 |
| HA |
CA |
CB |
HB2 |
304.5 |
180.0 |
| HA |
CA |
N |
H |
349.6 |
56.0 |
| HA |
CA |
N |
H2 |
109.6 |
180.1 |
| H |
N |
CA |
HA |
349.6 |
56.0 |
| CA |
N |
H |
H2 |
120.0 |
124.1 |
| H2 |
N |
CA |
HA |
109.6 |
180.1 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |