PDB Chemical Component CMB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CMB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.403	1.378
C1	C6	1.415	1.389
C1	HC1	1.080	1.080
C2	C3	1.425	1.392
C3	C4	1.394	1.408
C3	N7	1.388	1.374
C4	C5	1.457	1.401
C4	C9	1.411	1.416
C5	C6	1.421	1.365
C5	C10	1.475	1.507
C6	HC6	1.080	1.080
N7	C8	1.387	1.382
N7	C17	1.469	1.465
C8	C9	1.451	1.359
C8	C11	1.419	1.470
C9	HC9	1.080	1.080
C10	H101	1.100	1.090
C10	H102	1.100	1.090
C10	H103	1.100	1.090
C11	N12	1.355	1.348
C11	O45	1.234	1.216
N12	C13	1.463	1.465
N12	H12	1.000	0.970
C13	C14	1.527	1.507
C13	H131	1.100	1.091
C13	H132	1.100	1.089
C14	C26	1.404	1.383
C14	C30	1.403	1.382
C17	C18	1.508	1.507
C17	H171	1.100	1.091
C17	H172	1.100	1.090
C18	C21	1.411	1.383
C18	C25	1.387	1.380
C21	C22	1.408	1.384
C21	H21	1.080	1.080
C22	C23	1.409	1.380
C22	H22	1.080	1.080
C23	C24	1.415	1.395
C23	H23	1.080	1.080
C24	C25	1.388	1.394
C24	C31	1.453	1.481
C25	H251	1.080	1.080
C26	C27	1.404	1.383
C26	H26	1.080	1.080
C27	C28	1.405	1.384
C27	CL1	1.757	1.735
C28	C29	1.409	1.384
C28	H28	1.080	1.079
C29	C30	1.411	1.383
C29	CL2	1.763	1.737
C30	H30	1.080	1.079
C31	N32	1.335	1.302
C31	N53	1.327	1.379
N32	H32	1.000	0.969
N53	H531	1.000	0.970
N53	H532	1.000	0.970
C2	HC2	1.080	1.080

Bond Angles for CMB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	118.2	120.7
C2	C1	HC1	120.9	119.6
C1	C2	C3	120.7	119.8
C1	C2	HC2	119.6	120.1
C6	C1	HC1	120.9	119.7
C1	C6	C5	121.4	120.6
C1	C6	HC6	119.3	119.7
C2	C3	C4	122.7	119.4
C2	C3	N7	128.1	133.2
C3	C2	HC2	119.7	120.1
C4	C3	N7	109.0	107.4
C3	C4	C5	116.6	119.7
C3	C4	C9	110.4	106.9
C3	N7	C8	106.5	108.8
C3	N7	C17	124.4	125.6
C5	C4	C9	132.9	133.4
C4	C5	C6	120.3	119.8
C4	C5	C10	120.6	120.1
C4	C9	C8	102.8	107.7
C4	C9	HC9	128.6	126.1
C6	C5	C10	119.1	120.1
C5	C6	HC6	119.3	119.7
C5	C10	H101	109.5	109.5
C5	C10	H102	109.5	109.5
C5	C10	H103	109.5	109.5
C8	N7	C17	128.7	125.6
N7	C8	C9	111.1	109.1
N7	C8	C11	124.6	125.5
N7	C17	C18	114.1	109.5
N7	C17	H171	108.0	109.5
N7	C17	H172	106.9	109.5
C9	C8	C11	124.2	125.5
C8	C9	HC9	128.6	126.1
C8	C11	N12	118.4	120.0
C8	C11	O45	120.8	120.0
H101	C10	H102	109.4	109.5
H101	C10	H103	109.5	109.4
H102	C10	H103	109.5	109.5
N12	C11	O45	120.7	120.0
C11	N12	C13	119.8	120.0
C11	N12	H12	120.1	120.0
C13	N12	H12	120.1	120.1
N12	C13	C14	117.2	109.4
N12	C13	H131	107.0	109.5
N12	C13	H132	105.2	109.5
C14	C13	H131	107.0	109.4
C14	C13	H132	105.2	109.5
C13	C14	C26	119.5	120.0
C13	C14	C30	121.9	120.0
H131	C13	H132	115.7	109.5
C26	C14	C30	118.5	120.0
C14	C26	C27	121.9	120.1
C14	C26	H26	119.1	119.9
C14	C30	C29	121.0	120.0
C14	C30	H30	119.5	120.0
C18	C17	H171	107.9	109.4
C18	C17	H172	106.9	109.5
C17	C18	C21	124.8	120.0
C17	C18	C25	114.1	119.9
H171	C17	H172	113.2	109.5
C21	C18	C25	120.9	120.1
C18	C21	C22	120.0	120.3
C18	C21	H21	120.0	119.8
C18	C25	C24	119.7	119.8
C18	C25	H251	120.2	120.1
C22	C21	H21	120.0	119.9
C21	C22	C23	118.6	120.1
C21	C22	H22	120.7	120.0
C23	C22	H22	120.7	119.9
C22	C23	C24	120.5	119.9
C22	C23	H23	119.8	120.1
C24	C23	H23	119.8	120.0
C23	C24	C25	120.2	119.7
C23	C24	C31	124.0	120.1
C25	C24	C31	115.7	120.1
C24	C25	H251	120.2	120.1
C24	C31	N32	122.9	120.0
C24	C31	N53	115.6	120.0
C27	C26	H26	119.1	120.0
C26	C27	C28	118.8	120.0
C26	C27	CL1	120.1	120.0
C28	C27	CL1	121.0	120.0
C27	C28	C29	120.6	119.9
C27	C28	H28	119.7	120.0
C29	C28	H28	119.7	120.1
C28	C29	C30	119.2	120.0
C28	C29	CL2	121.1	119.9
C30	C29	CL2	119.6	120.0
C29	C30	H30	119.5	120.0
N32	C31	N53	121.5	120.0
C31	N32	H32	109.5	120.0
C31	N53	H531	109.5	120.0
C31	N53	H532	125.3	120.0
H531	N53	H532	125.2	120.0

Torsion Angles for CMB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	HC1	180.0	180.3
C2	C1	C6	C5	358.6	360.0
C2	C1	C6	HC6	178.6	180.0
C1	C2	C3	C4	1.4	360.0
C1	C2	C3	N7	186.1	180.1
C3	C2	C1	HC2	180.0	180.0
C2	C1	C6	HC1	180.0	179.7
C6	C1	C2	C3	0.1	0.0
C6	C1	C2	HC2	180.1	180.0
C4	C5	C6	C1	1.3	0.0
C1	C6	C5	C10	182.9	180.0
C5	C6	C1	HC6	180.0	180.0
C2	C1	HC1	C6	180.0	180.3
HC1	C1	C2	C3	180.1	179.7
HC1	C1	C2	HC2	0.1	359.7
HC1	C1	C6	C5	178.6	180.3
HC1	C1	C6	HC6	358.6	0.3
C3	C2	C1	C6	0.1	0.0
C3	C2	C1	HC1	180.1	179.7
C1	C2	C3	HC2	180.0	180.0
C4	C3	C2	N7	175.4	179.9
C2	C3	C4	C5	358.4	0.0
C2	C3	C4	C9	179.5	180.0
C2	C3	N7	C8	178.0	179.9
C2	C3	N7	C17	5.2	359.9
C2	C3	C4	N7	183.9	180.1
C4	C3	C2	HC2	181.5	180.0
C4	C3	N7	C8	2.1	0.0
C4	C3	N7	C17	189.4	180.0
C5	C4	C3	C9	178.9	180.0
C3	C4	C5	C6	0.2	360.0
C3	C4	C5	C10	178.6	179.9
C3	C4	C9	C8	4.5	0.1
C3	C4	C9	HC9	184.5	180.0
C2	C3	N7	C4	175.9	179.9
N7	C3	C2	HC2	6.1	0.1
N7	C3	C4	C5	174.6	180.0
N7	C3	C4	C9	355.7	359.9
C8	N7	C3	C17	172.7	180.0
C3	N7	C8	C9	0.8	0.0
C3	N7	C8	C11	182.2	180.0
C3	N7	C17	C18	268.8	84.2
C3	N7	C17	H171	28.7	204.1
C3	N7	C17	H172	150.9	324.1
C1	C6	C5	C4	1.3	0.0
C5	C4	C3	N7	174.6	180.0
C3	C4	C5	C9	181.4	180.0
C5	C4	C9	C8	185.8	180.0
C5	C4	C9	HC9	5.8	360.0
C6	C5	C4	C10	181.7	180.0
C4	C5	C6	HC6	181.3	180.0
C4	C5	C10	H101	155.2	90.0
C4	C5	C10	H102	275.2	210.0
C4	C5	C10	H103	35.2	330.0
C9	C4	C3	N7	355.7	359.9
C3	C4	C9	C5	178.7	180.0
C9	C4	C5	C6	178.9	180.0
C9	C4	C5	C10	357.2	360.0
N7	C8	C9	C4	356.7	360.0
C4	C9	C8	C11	175.3	180.0
C8	C9	C4	HC9	180.0	180.0
C5	C6	C1	HC1	178.6	180.3
C1	C6	C5	HC6	180.0	180.0
C6	C5	C4	C9	178.9	180.0
C4	C5	C6	C10	178.4	180.0
C6	C5	C10	H101	333.6	269.9
C6	C5	C10	H102	93.5	30.0
C6	C5	C10	H103	213.6	150.0
C10	C5	C4	C9	357.2	360.0
C4	C5	C10	C6	181.6	180.0
C10	C5	C6	HC6	2.9	0.0
H101	C10	C5	H102	240.0	240.0
H101	C10	C5	H103	120.0	120.0
H102	C10	C5	H103	240.0	240.0
HC6	C6	C1	HC1	358.6	0.3
C1	C6	HC6	C5	180.0	180.0
HC6	C6	C5	C10	2.9	0.0
C3	N7	C8	C17	187.7	180.0
C4	C9	C8	N7	356.7	360.0
C8	N7	C17	C18	97.7	264.1
C8	N7	C17	H171	217.7	24.1
C8	N7	C17	H172	339.8	144.1
C9	C8	N7	C11	178.6	180.0
N7	C8	C9	HC9	176.7	180.0
N7	C8	C11	N12	151.3	184.7
N7	C8	C11	O45	332.4	4.8
C3	N7	C17	C8	171.0	180.0
C17	N7	C8	C9	173.1	180.0
C17	N7	C8	C11	354.5	0.0
C18	C17	N7	H171	240.0	240.0
C18	C17	N7	H172	117.9	120.0
N7	C17	C18	C21	330.3	85.1
N7	C17	C18	C25	154.8	264.9
H171	C17	N7	H172	237.9	240.0
C4	C9	C8	HC9	180.0	180.0
C9	C8	N7	C17	173.1	180.0
N7	C8	C9	C11	181.4	180.0
C9	C8	C11	N12	332.9	4.7
C9	C8	C11	O45	154.0	184.8
C11	C8	N7	C17	354.5	0.0
N7	C8	C11	C9	178.4	180.0
C11	C8	C9	HC9	355.3	0.0
N12	C11	C8	O45	178.9	179.9
C8	C11	N12	C13	180.4	185.0
C8	C11	N12	H12	0.4	5.1
C4	C9	HC9	C8	180.0	180.1
HC9	C9	C8	C11	355.3	0.0
C5	C10	H101	H102	120.0	120.0
C5	C10	H101	H103	240.0	240.0
H102	C10	H101	H103	120.0	120.0
C5	C10	H102	H101	240.0	240.0
C5	C10	H102	H103	120.0	120.0
H101	C10	H102	H103	240.0	240.0
C5	C10	H103	H101	120.0	120.0
C5	C10	H103	H102	240.0	240.0
H101	C10	H103	H102	120.0	120.1
C8	C11	N12	O45	181.1	180.1
C13	N12	C11	H12	180.0	179.9
C11	N12	C13	C14	69.1	180.0
C11	N12	C13	H131	189.1	300.0
C11	N12	C13	H132	312.6	60.1
C8	C11	O45	N12	178.9	179.9
O45	C11	N12	C13	359.3	5.0
O45	C11	N12	H12	179.3	185.1
C13	N12	C11	O45	359.3	5.0
C11	N12	C13	H12	180.0	180.1
C14	C13	N12	H131	240.0	240.1
C14	C13	N12	H132	116.4	120.0
N12	C13	C14	C26	192.3	90.0
N12	C13	C14	C30	17.1	269.7
H131	C13	N12	H132	236.4	239.9
H12	N12	C11	O45	179.3	185.1
C11	N12	H12	C13	180.0	179.9
H12	N12	C13	C14	249.1	360.0
H12	N12	C13	H131	9.1	119.9
H12	N12	C13	H132	132.6	240.0
C14	C13	N12	H12	249.1	360.0
N12	C13	C14	H131	120.0	120.0
N12	C13	C14	H132	243.6	240.0
H131	C13	C14	H132	123.6	120.0
C26	C14	C13	C30	175.2	180.3
C13	C14	C26	C27	185.9	180.0
C13	C14	C26	H26	5.9	0.0
C13	C14	C30	C29	174.0	179.8
C13	C14	C30	H30	354.0	0.0
H131	C13	N12	H12	9.1	119.9
N12	C13	H131	C14	233.7	240.1
N12	C13	H131	H132	116.9	120.1
C14	C13	H131	H132	243.2	240.0
H131	C13	C14	C26	72.3	330.0
H131	C13	C14	C30	257.1	149.7
H132	C13	N12	H12	132.6	240.0
N12	C13	H132	C14	124.3	120.0
N12	C13	H132	H131	242.2	239.9
C14	C13	H132	H131	117.8	120.0
H132	C13	C14	C26	308.8	210.0
H132	C13	C14	C30	133.5	29.7
C26	C14	C13	H131	72.3	330.0
C26	C14	C13	H132	308.8	210.0
C13	C14	C26	C30	184.6	179.7
C26	C14	C30	C29	358.7	359.5
C26	C14	C30	H30	178.7	179.7
C27	C26	C14	H26	180.0	179.9
C14	C26	C27	C28	359.0	0.0
C14	C26	C27	CL1	175.5	180.0
C30	C14	C13	H131	257.1	149.7
C30	C14	C13	H132	133.5	29.7
C13	C14	C30	C26	175.3	180.3
C30	C14	C26	C27	1.3	0.2
C30	C14	C26	H26	181.3	180.3
C28	C29	C30	C14	1.1	0.5
C14	C30	C29	CL2	183.6	180.3
C29	C30	C14	H30	180.0	179.8
N7	C17	C18	H171	120.0	120.0
N7	C17	C18	H172	242.1	240.0
H171	C17	C18	H172	122.1	120.0
C21	C18	C17	C25	175.5	180.2
C17	C18	C21	C22	188.9	180.0
C17	C18	C21	H21	9.0	360.0
C17	C18	C25	C24	172.4	179.7
C17	C18	C25	H251	352.5	359.9
N7	C17	H171	C18	236.2	240.0
N7	C17	H171	H172	118.1	120.0
C18	C17	H171	H172	241.9	240.0
H171	C17	C18	C21	210.3	325.1
H171	C17	C18	C25	34.8	144.9
N7	C17	H172	C18	122.6	120.0
N7	C17	H172	H171	241.3	240.0
C18	C17	H172	H171	118.7	120.0
H172	C17	C18	C21	88.2	205.1
H172	C17	C18	C25	272.7	24.9
C21	C18	C17	H171	210.3	325.1
C21	C18	C17	H172	88.2	205.1
C17	C18	C21	C25	184.8	179.8
C21	C18	C25	C24	356.8	359.5
C21	C18	C25	H251	176.8	179.7
C22	C21	C18	H21	180.0	180.0
C18	C21	C22	C23	358.5	360.0
C18	C21	C22	H22	178.5	180.0
C25	C18	C17	H171	34.8	144.9
C25	C18	C17	H172	272.7	24.9
C17	C18	C25	C21	175.7	180.2
C25	C18	C21	C22	4.1	0.2
C25	C18	C21	H21	184.1	180.2
C23	C24	C25	C18	359.7	0.5
C18	C25	C24	C31	178.4	180.2
C24	C25	C18	H251	180.0	179.8
C22	C21	C18	C25	4.1	0.2
C18	C21	C22	H21	180.0	180.0
C23	C22	C21	H22	180.0	180.0
C21	C22	C23	C24	358.0	0.1
C21	C22	C23	H23	178.0	180.0
H21	C21	C18	C25	184.1	180.2
C18	C21	H21	C22	180.0	180.0
H21	C21	C22	C23	178.5	180.0
H21	C21	C22	H22	358.5	0.0
C23	C22	C21	H21	178.5	180.0
C21	C22	C23	H22	180.0	180.0
C24	C23	C22	H23	180.0	180.1
C22	C23	C24	C25	2.9	359.7
C22	C23	C24	C31	184.4	180.0
H22	C22	C21	H21	358.5	0.0
C21	C22	H22	C23	180.0	180.0
H22	C22	C23	C24	178.0	180.1
H22	C22	C23	H23	358.0	360.0
C18	C25	C24	C23	359.7	0.5
C24	C23	C22	H22	178.0	180.1
C22	C23	C24	H23	180.0	179.9
C25	C24	C23	C31	178.5	179.7
C23	C24	C25	H251	179.7	180.3
C23	C24	C31	N32	343.5	180.0
C23	C24	C31	N53	166.1	359.9
H23	C23	C22	H22	358.0	360.0
C22	C23	H23	C24	180.0	180.1
H23	C23	C24	C25	182.9	179.8
H23	C23	C24	C31	4.4	0.1
C18	C25	C24	H251	180.0	180.2
C25	C24	C23	H23	182.9	179.8
C23	C24	C25	C31	181.4	180.3
C25	C24	C31	N32	165.0	0.3
C25	C24	C31	N53	347.5	180.3
C31	C24	C23	H23	4.4	0.1
C23	C24	C31	C25	178.6	179.7
C31	C24	C25	H251	358.3	0.0
N32	C31	C24	N53	177.4	180.0
C24	C31	N32	H32	180.0	180.0
C24	C31	N53	H531	358.9	0.0
C24	C31	N53	H532	178.9	180.1
C18	C25	H251	C24	180.0	179.8
H251	C25	C24	C31	358.3	0.0
C27	C26	C14	C30	1.3	0.2
C14	C26	C27	H26	180.0	180.1
C28	C27	C26	CL1	183.5	180.0
C26	C27	C28	C29	0.7	359.9
C26	C27	C28	H28	180.7	179.9
H26	C26	C14	C30	181.3	180.3
C14	C26	H26	C27	180.0	179.9
H26	C26	C27	C28	179.0	180.0
H26	C26	C27	CL1	355.5	359.9
C28	C27	C26	H26	179.0	180.0
C26	C27	C28	CL1	176.5	180.0
C29	C28	C27	H28	180.0	180.0
C27	C28	C29	C30	359.3	359.8
C27	C28	C29	CL2	176.6	180.0
CL1	C27	C26	H26	355.5	359.9
C26	C27	CL1	C28	183.6	180.0
CL1	C27	C28	C29	184.2	180.0
CL1	C27	C28	H28	4.2	360.0
C14	C30	C29	C28	1.1	0.5
C29	C28	C27	CL1	184.2	180.0
C27	C28	C29	H28	180.0	180.0
C30	C29	C28	CL2	182.6	179.8
C28	C29	C30	H30	181.1	180.2
H28	C28	C27	CL1	4.2	360.0
C27	C28	H28	C29	180.0	180.0
H28	C28	C29	C30	179.3	179.8
H28	C28	C29	CL2	356.6	360.0
C14	C30	C29	H30	180.0	180.2
C30	C29	C28	H28	179.3	179.8
C28	C29	C30	CL2	177.4	180.2
CL2	C29	C28	H28	356.6	360.0
C28	C29	CL2	C30	182.6	179.8
CL2	C29	C30	H30	3.6	0.1
C14	C30	H30	C29	180.0	179.8
H30	C30	C29	CL2	3.6	0.1
C24	C31	N32	N53	182.7	180.0
N32	C31	N53	H531	181.5	180.0
N32	C31	N53	H532	1.4	0.1
C24	C31	N53	N32	177.5	180.0
N53	C31	N32	H32	357.3	0.0
H531	N53	C31	H532	180.0	179.9
H32	N32	C31	N53	357.3	0.0
C31	N53	H531	H532	180.0	180.1
C31	N53	H532	H531	180.0	179.9
HC2	C2	C1	C6	180.1	180.0
HC2	C2	C1	HC1	0.1	359.7
C1	C2	HC2	C3	180.0	180.0
HC2	C2	C3	C4	181.5	180.0
HC2	C2	C3	N7	6.1	0.1