PDB Chemical Component CMA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CMA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CA	CB	1.546	1.530
CA	C	1.526	1.507
CA	N	1.473	1.468
CA	HA	1.116	1.089
CB	CG	1.525	1.530
CB	HB1	1.115	1.090
CB	HB2	1.114	1.089
O	C	1.249	1.208
C	OXT	1.248	1.342
C1	C2	1.535	1.529
C1	N	1.472	1.469
C1	H11	1.116	1.090
C1	H12	1.115	1.089
C2	C3	1.538	1.506
C2	H21	1.115	1.090
C2	H22	1.116	1.090
C3	O1	1.254	1.208
C3	O2	1.255	1.342
O2	HO2	0.950	0.967
N	H	1.020	1.009
CG	CD	1.515	1.531
CG	HG1	1.116	1.089
CG	HG2	1.116	1.090
CD	NE	1.460	1.464
CD	HD1	1.115	1.089
CD	HD2	1.114	1.090
NE	CZ	1.342	1.375
NE	HE	1.021	0.969
CZ	NH1	1.334	1.374
CZ	NH2	1.323	1.304
NH1	HH11	1.020	0.971
NH1	HH12	1.020	0.970
NH2	HH21	1.020	0.969
OXT	HXT	0.949	0.967

Bond Angles for CMA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CB	CA	C	109.4	109.5
CB	CA	N	110.8	109.5
CB	CA	HA	108.8	109.5
CA	CB	CG	114.8	109.4
CA	CB	HB1	110.2	109.5
CA	CB	HB2	110.3	109.5
C	CA	N	110.0	109.5
C	CA	HA	109.6	109.5
CA	C	O	117.7	120.0
CA	C	OXT	118.6	120.0
N	CA	HA	108.2	109.4
CA	N	C1	123.3	106.7
CA	N	H	107.3	106.7
CG	CB	HB1	110.2	109.5
CG	CB	HB2	110.2	109.4
CB	CG	CD	111.9	109.4
CB	CG	HG1	111.3	109.5
CB	CG	HG2	111.3	109.4
HB1	CB	HB2	100.0	109.5
O	C	OXT	123.8	120.0
C	OXT	HXT	118.6	120.0
C2	C1	N	114.2	109.5
C2	C1	H11	110.5	109.5
C2	C1	H12	110.5	109.5
C1	C2	C3	114.0	109.6
C1	C2	H21	110.5	109.5
C1	C2	H22	110.5	109.4
N	C1	H11	110.5	109.4
N	C1	H12	110.5	109.5
C1	N	H	107.3	106.6
H11	C1	H12	99.7	109.4
C3	C2	H21	110.6	109.4
C3	C2	H22	110.5	109.5
C2	C3	O1	118.7	119.9
C2	C3	O2	118.7	120.1
H21	C2	H22	99.7	109.4
O1	C3	O2	122.6	120.0
C3	O2	HO2	118.7	120.0
CD	CG	HG1	111.3	109.5
CD	CG	HG2	111.3	109.4
CG	CD	NE	113.0	109.5
CG	CD	HD1	110.9	109.5
CG	CD	HD2	110.9	109.4
HG1	CG	HG2	99.0	109.5
NE	CD	HD1	110.9	109.5
NE	CD	HD2	110.9	109.4
CD	NE	CZ	124.9	120.0
CD	NE	HE	106.8	120.0
HD1	CD	HD2	99.5	109.4
CZ	NE	HE	106.8	120.0
NE	CZ	NH1	121.2	120.0
NE	CZ	NH2	119.3	120.0
NH1	CZ	NH2	119.5	120.0
CZ	NH1	HH11	121.2	120.0
CZ	NH1	HH12	108.0	120.0
CZ	NH2	HH21	38.5	120.0
HH11	NH1	HH12	108.0	119.9

Torsion Angles for CMA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	CA	CB	N	238.6	240.0
C	CA	CB	HA	119.7	120.0
CB	CA	C	O	90.1	270.0
CB	CA	C	OXT	270.0	90.0
N	CA	CB	HA	241.2	240.0
CB	CA	N	C1	57.2	150.1
CB	CA	N	H	292.0	263.8
CG	CB	CA	HB1	234.8	120.0
CG	CB	CA	HB2	125.3	240.1
CA	CB	CG	CD	239.0	180.0
CA	CB	CG	HG1	4.3	60.0
CA	CB	CG	HG2	113.7	299.9
HB1	CB	CA	HB2	250.5	120.0
CB	CA	C	N	121.9	120.0
CB	CA	C	HA	240.8	240.0
C	CA	CB	CG	115.8	180.0
C	CA	CB	HB1	241.0	60.0
C	CA	CB	HB2	350.5	300.0
N	CA	C	HA	118.9	120.0
C	CA	N	C1	178.3	270.0
C	CA	N	H	53.1	23.8
O	C	CA	OXT	180.1	180.0
CA	C	OXT	HXT	180.0	180.0
CB	CA	N	C	238.9	240.0
CB	CA	N	HA	119.2	120.0
N	CA	CB	CG	237.2	300.0
N	CA	CB	HB1	2.4	180.0
N	CA	CB	HB2	111.9	60.0
C	CA	N	HA	240.3	240.0
N	CA	C	O	328.2	150.0
N	CA	C	OXT	148.1	330.0
C2	C1	N	CA	246.3	180.0
CA	N	C1	H11	121.0	300.0
CA	N	C1	H12	11.6	59.9
C1	N	CA	H	125.2	246.3
CB	CA	HA	C	119.6	120.0
CB	CA	HA	N	239.6	240.0
HA	CA	CB	CG	356.0	60.0
HA	CA	CB	HB1	121.2	300.0
HA	CA	CB	HB2	230.8	179.9
C	CA	HA	N	120.0	120.0
HA	CA	C	O	209.4	30.0
HA	CA	C	OXT	29.3	210.0
HA	CA	N	C1	298.0	30.1
HA	CA	N	H	172.8	143.8
CG	CB	CA	C	115.8	180.0
CG	CB	CA	N	237.2	300.0
CG	CB	CA	HA	356.0	60.0
CA	CB	CG	HB1	125.2	240.0
CA	CB	CG	HB2	234.7	120.0
HB1	CB	CG	HB2	109.5	240.0
CD	CG	CB	HG1	234.7	120.1
CD	CG	CB	HG2	125.3	240.1
CB	CG	CD	NE	150.2	180.0
CB	CG	CD	HD1	275.4	59.9
CB	CG	CD	HD2	24.9	300.0
HG1	CG	CB	HG2	250.6	120.0
HB1	CB	CA	C	241.0	60.0
HB1	CB	CA	N	2.4	180.0
HB1	CB	CA	HA	121.2	300.0
CA	CB	HB1	CG	232.2	120.0
CA	CB	HB1	HB2	116.1	240.0
CG	CB	HB1	HB2	243.9	120.0
HB1	CB	CG	CD	113.8	300.1
HB1	CB	CG	HG1	239.1	180.0
HB1	CB	CG	HG2	348.5	59.9
HB2	CB	CA	C	350.5	300.0
HB2	CB	CA	N	111.9	60.0
HB2	CB	CA	HA	230.8	179.9
CA	CB	HB2	CG	127.8	240.1
CA	CB	HB2	HB1	243.9	120.0
CG	CB	HB2	HB1	116.1	239.9
HB2	CB	CG	CD	4.3	60.1
HB2	CB	CG	HG1	129.6	300.0
HB2	CB	CG	HG2	239.0	180.0
O	C	CA	N	328.2	150.0
O	C	CA	HA	209.4	30.0
CA	C	O	OXT	179.9	180.0
O	C	OXT	HXT	359.9	360.0
OXT	C	CA	N	148.1	330.0
OXT	C	CA	HA	29.3	210.0
CA	C	OXT	O	180.1	180.0
CA	N	C1	C2	246.3	180.0
N	C1	C2	H11	234.7	120.0
N	C1	C2	H12	125.3	239.9
C2	C1	N	H	11.5	66.2
H11	C1	C2	H12	250.6	119.9
C3	C2	C1	H21	234.7	240.0
C3	C2	C1	H22	125.2	120.0
C1	C2	C3	O1	191.9	360.0
C1	C2	C3	O2	12.1	180.0
H21	C2	C1	H22	250.6	240.1
C1	N	CA	HA	298.0	30.1
CA	N	C1	H	234.8	113.8
C2	C1	N	H11	125.3	240.0
C2	C1	N	H12	234.7	120.0
N	C1	C2	C3	306.1	180.0
N	C1	C2	H21	71.4	300.0
N	C1	C2	H22	180.8	59.9
H11	C1	N	H12	109.4	240.0
C2	C1	H11	N	232.6	120.0
C2	C1	H11	H12	116.3	240.1
H11	C1	C2	C3	71.4	60.0
H11	C1	C2	H21	196.7	180.0
H11	C1	C2	H22	306.1	299.9
N	C1	H11	H12	243.7	120.0
H11	C1	N	H	246.3	186.2
C2	C1	H12	N	127.4	239.9
C2	C1	H12	H11	243.7	119.9
H12	C1	C2	C3	180.8	300.1
H12	C1	C2	H21	306.1	60.1
H12	C1	C2	H22	55.5	180.0
N	C1	H12	H11	116.3	240.0
H12	C1	N	H	136.8	306.2
C3	C2	C1	N	306.1	180.0
C3	C2	C1	H11	71.4	60.0
C3	C2	C1	H12	180.8	300.1
C1	C2	C3	H21	125.3	120.0
C1	C2	C3	H22	234.8	240.0
H21	C2	C3	H22	109.5	120.0
O1	C3	C2	O2	179.8	180.0
C2	C3	O2	HO2	180.0	180.0
H21	C2	C1	N	71.4	300.0
H21	C2	C1	H11	196.7	180.0
H21	C2	C1	H12	306.1	60.1
C1	C2	H21	C3	232.8	239.9
C1	C2	H21	H22	116.4	119.9
C3	C2	H21	H22	243.6	240.0
H21	C2	C3	O1	66.6	240.0
H21	C2	C3	O2	246.8	60.0
H22	C2	C1	N	180.8	59.9
H22	C2	C1	H11	306.1	299.9
H22	C2	C1	H12	55.5	180.0
C1	C2	H22	C3	127.2	120.1
C1	C2	H22	H21	243.6	240.1
C3	C2	H22	H21	116.4	119.9
H22	C2	C3	O1	317.2	120.0
H22	C2	C3	O2	137.4	300.1
O1	C3	C2	H21	66.6	240.0
O1	C3	C2	H22	317.2	120.0
C2	C3	O1	O2	180.2	180.0
O1	C3	O2	HO2	0.2	0.0
O2	C3	C2	H21	246.8	60.0
O2	C3	C2	H22	137.4	300.1
C2	C3	O2	O1	179.8	180.0
H	N	CA	HA	172.8	143.8
CA	N	H	C1	134.3	246.2
H	N	C1	H11	246.3	186.2
H	N	C1	H12	136.8	306.2
CD	CG	CB	HB1	113.8	300.1
CD	CG	CB	HB2	4.3	60.1
CB	CG	CD	HG1	125.3	239.9
CB	CG	CD	HG2	234.7	119.9
HG1	CG	CD	HG2	109.4	239.9
NE	CD	CG	HD1	234.8	120.1
NE	CD	CG	HD2	125.3	240.1
CG	CD	NE	CZ	179.2	180.0
CG	CD	NE	HE	53.9	359.9
HD1	CD	CG	HD2	250.5	119.9
HG1	CG	CB	HB1	239.1	180.0
HG1	CG	CB	HB2	129.6	300.0
CB	CG	HG1	CD	234.4	120.0
CB	CG	HG1	HG2	117.2	240.0
CD	CG	HG1	HG2	242.8	120.0
HG1	CG	CD	NE	24.9	300.1
HG1	CG	CD	HD1	150.1	180.0
HG1	CG	CD	HD2	259.6	60.0
HG2	CG	CB	HB1	348.5	59.9
HG2	CG	CB	HB2	239.0	180.0
CB	CG	HG2	CD	125.6	240.1
CB	CG	HG2	HG1	242.8	120.0
CD	CG	HG2	HG1	117.2	239.9
HG2	CG	CD	NE	275.5	60.2
HG2	CG	CD	HD1	40.7	300.0
HG2	CG	CD	HD2	150.2	180.1
NE	CD	CG	HG1	24.9	300.1
NE	CD	CG	HG2	275.5	60.2
CG	CD	NE	HD1	125.2	239.9
CG	CD	NE	HD2	234.8	119.9
HD1	CD	NE	HD2	109.5	240.0
CZ	NE	CD	HE	125.3	180.2
CD	NE	CZ	NH1	359.7	180.0
CD	NE	CZ	NH2	180.1	359.9
HD1	CD	CG	HG1	150.1	180.0
HD1	CD	CG	HG2	40.7	300.0
CG	CD	HD1	NE	233.6	120.1
CG	CD	HD1	HD2	116.8	240.1
NE	CD	HD1	HD2	243.2	120.0
HD1	CD	NE	CZ	53.9	300.1
HD1	CD	NE	HE	288.6	120.0
HD2	CD	CG	HG1	259.6	60.0
HD2	CD	CG	HG2	150.2	180.1
CG	CD	HD2	NE	126.4	240.0
CG	CD	HD2	HD1	243.2	120.0
NE	CD	HD2	HD1	116.8	240.0
HD2	CD	NE	CZ	304.4	60.1
HD2	CD	NE	HE	179.1	240.0
CZ	NE	CD	HD1	53.9	300.1
CZ	NE	CD	HD2	304.4	60.1
CD	NE	CZ	HE	234.7	179.8
NH1	CZ	NE	NH2	179.6	180.1
NE	CZ	NH1	HH11	180.0	179.9
NE	CZ	NH1	HH12	54.7	359.7
NE	CZ	NH2	HH21	129.1	360.0
HE	NE	CD	HD1	288.6	120.0
HE	NE	CD	HD2	179.1	240.0
CD	NE	HE	CZ	135.7	180.2
HE	NE	CZ	NH1	125.0	0.1
HE	NE	CZ	NH2	305.4	180.1
NH1	CZ	NE	HE	125.0	0.1
NE	CZ	NH1	NH2	180.4	179.9
NH1	CZ	NH2	HH21	309.5	179.9
HH11	NH1	CZ	HH12	125.3	180.2
NH2	CZ	NE	HE	305.4	180.1
NE	CZ	NH2	NH1	179.6	180.1
NH2	CZ	NH1	HH11	359.6	360.0
NH2	CZ	NH1	HH12	234.3	179.7
HH11	NH1	CZ	NH2	359.6	360.0
CZ	NH1	HH11	HH12	234.8	179.8
HH12	NH1	CZ	NH2	234.3	179.7
CZ	NH1	HH12	HH11	132.7	180.2