PDB Chemical Component CM9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CM9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C8	1.208	1.208
C8	C9	1.509	1.509
C8	N3	1.346	1.346
C9	C10	1.521	1.521
C9	C15	1.522	1.522
C10	C11	1.530	1.530
C11	C12	1.528	1.528
C12	C13	1.524	1.524
C12	C14	1.532	1.532
C14	C15	1.527	1.527
N3	C7	1.473	1.473
C7	C16	1.529	1.529
C7	C6	1.522	1.522
C16	C17	1.531	1.531
C17	S	1.774	1.774
S	C18	1.765	1.765
C6	O2	1.223	1.223
C6	N2	1.339	1.339
N2	C5	1.406	1.406
C5	C1	1.398	1.398
C5	C4	1.373	1.373
C1	C2	1.409	1.409
C2	N1	1.335	1.335
N1	C3	1.343	1.343
C3	C4	1.394	1.394
C9	H9	1.100	1.100
N3	H3	1.000	1.000
C10	H101	1.100	1.100
C10	H102	1.100	1.100
C15	H151	1.100	1.100
C15	H152	1.100	1.100
C11	H111	1.100	1.100
C11	H112	1.100	1.100
C12	H12	1.100	1.100
C13	H131	1.100	1.100
C13	H132	1.100	1.100
C13	H133	1.101	1.100
C14	H141	1.100	1.100
C14	H142	1.100	1.100
C7	H7	1.100	1.100
C16	H161	1.100	1.100
C16	H162	1.100	1.100
C17	H171	1.100	1.100
C17	H172	1.100	1.100
C18	H181	1.100	1.100
C18	H182	1.100	1.100
C18	H183	1.100	1.100
N2	H2	1.000	1.000
C1	H1	1.080	1.080
C4	H4	1.080	1.080
C2	HA	1.080	1.080
C3	HB	1.080	1.080

Bond Angles for CM9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C8	C9	115.3	115.3
O1	C8	N3	121.5	121.5
C9	C8	N3	123.2	123.2
C8	C9	C10	116.5	116.5
C8	C9	C15	112.4	112.4
C8	C9	H9	102.6	102.6
C8	N3	C7	118.4	118.4
C8	N3	H3	120.8	120.8
C10	C9	C15	110.8	110.8
C9	C10	C11	110.8	110.8
C10	C9	H9	104.4	104.4
C9	C10	H101	109.0	109.0
C9	C10	H102	108.7	108.7
C9	C15	C14	109.7	109.7
C15	C9	H9	109.3	109.3
C9	C15	H151	109.4	109.4
C9	C15	H152	109.4	109.4
C10	C11	C12	114.3	114.3
C11	C10	H101	109.1	109.1
C11	C10	H102	108.8	108.8
C10	C11	H111	107.9	107.9
C10	C11	H112	106.8	106.8
C11	C12	C13	109.8	109.8
C11	C12	C14	112.0	112.0
C12	C11	H111	107.9	107.9
C12	C11	H112	106.8	106.8
C11	C12	H12	107.6	107.6
C13	C12	C14	109.7	109.7
C13	C12	H12	110.0	110.0
C12	C13	H131	109.5	109.5
C12	C13	H132	109.5	109.5
C12	C13	H133	109.5	109.5
C12	C14	C15	113.7	113.7
C14	C12	H12	107.7	107.7
C12	C14	H141	108.1	108.1
C12	C14	H142	107.1	107.1
C14	C15	H151	109.4	109.4
C14	C15	H152	109.3	109.3
C15	C14	H141	108.1	108.1
C15	C14	H142	107.1	107.1
N3	C7	C16	111.0	111.0
N3	C7	C6	108.0	108.0
C7	N3	H3	120.8	120.8
N3	C7	H7	110.3	110.3
C16	C7	C6	112.1	112.1
C7	C16	C17	109.5	109.5
C16	C7	H7	106.1	106.1
C7	C16	H161	109.5	109.5
C7	C16	H162	109.4	109.4
C7	C6	O2	121.4	121.4
C7	C6	N2	113.5	113.5
C6	C7	H7	109.2	109.2
C16	C17	S	113.0	113.0
C17	C16	H161	109.5	109.5
C17	C16	H162	109.5	109.5
C16	C17	H171	108.3	108.3
C16	C17	H172	107.5	107.5
C17	S	C18	100.9	100.9
S	C17	H171	108.3	108.3
S	C17	H172	107.5	107.5
S	C18	H181	109.5	109.5
S	C18	H182	109.5	109.5
S	C18	H183	109.5	109.5
O2	C6	N2	125.1	125.1
C6	N2	C5	129.9	129.9
C6	N2	H2	115.1	115.1
N2	C5	C1	125.7	125.7
N2	C5	C4	115.9	115.9
C5	N2	H2	115.1	115.1
C1	C5	C4	118.4	118.4
C5	C1	C2	119.8	119.8
C5	C1	H1	120.1	120.1
C5	C4	C3	119.5	119.5
C5	C4	H4	120.2	120.2
C1	C2	N1	120.3	120.3
C2	C1	H1	120.1	120.1
C1	C2	HA	119.9	119.9
C2	N1	C3	120.3	120.3
N1	C2	HA	119.8	119.9
N1	C3	C4	121.7	121.7
N1	C3	HB	119.1	119.1
C3	C4	H4	120.2	120.2
C4	C3	HB	119.1	119.1
H101	C10	H102	110.5	110.5
H151	C15	H152	109.7	109.7
H111	C11	H112	113.3	113.3
H131	C13	H132	109.5	109.5
H131	C13	H133	109.5	109.4
H132	C13	H133	109.5	109.5
H141	C14	H142	112.8	112.8
H161	C16	H162	109.5	109.5
H171	C17	H172	112.3	112.3
H181	C18	H182	109.5	109.5
H181	C18	H183	109.4	109.5
H182	C18	H183	109.5	109.5

Torsion Angles for CM9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C9	C8	O1	N3	182.9	182.9
O1	C8	C9	C10	274.3	274.3
O1	C8	C9	C15	145.0	145.0
O1	C8	C9	H9	27.7	27.7
O1	C8	N3	C7	359.5	359.5
O1	C8	N3	H3	179.5	179.5
O1	C8	C9	N3	177.1	177.1
C9	C8	N3	C7	176.3	176.3
C9	C8	N3	H3	356.4	356.4
C10	C9	C8	C15	129.4	129.4
C8	C9	C10	C11	182.8	182.8
C10	C9	C8	H9	246.7	246.7
C8	C9	C10	H101	302.8	302.8
C8	C9	C10	H102	63.3	63.3
C8	C9	C15	C14	198.8	198.8
C15	C9	C8	H9	117.3	117.3
C8	C9	C15	H151	318.8	318.8
C8	C9	C15	H152	78.9	78.9
O1	C8	N3	C9	183.1	183.1
N3	C8	C9	C10	97.3	97.3
N3	C8	C9	C15	327.9	327.9
N3	C8	C9	H9	210.6	210.6
C8	N3	C7	C16	157.4	157.4
C8	N3	C7	C6	280.7	280.7
C7	N3	C8	H3	180.0	180.0
C8	N3	C7	H7	40.0	40.0
C10	C9	C8	N3	97.3	97.3
C8	C9	C10	C15	229.9	229.9
C8	C9	C10	H9	112.3	112.3
C10	C9	C15	C14	66.6	66.6
C15	C9	C10	H9	242.4	242.4
C10	C9	C15	H151	186.6	186.6
C10	C9	C15	H152	306.7	306.7
C9	C10	C11	C12	347.7	347.7
C11	C10	C9	H101	240.0	240.0
C11	C10	C9	H102	119.5	119.5
C9	C10	C11	H111	107.7	107.7
C9	C10	C11	H112	229.8	229.8
H101	C10	C9	H102	239.5	239.5
C15	C9	C8	N3	327.9	327.9
C8	C9	C15	C10	132.2	132.2
C8	C9	C15	H9	246.8	246.8
C15	C9	C10	C11	312.9	312.9
C10	C9	C15	H9	114.6	114.6
C15	C9	C10	H101	72.9	72.9
C15	C9	C10	H102	193.4	193.4
C12	C14	C15	C9	337.1	337.1
C14	C15	C9	H151	240.0	240.0
C14	C15	C9	H152	119.9	119.9
C9	C15	C14	H141	217.1	217.1
C9	C15	C14	H142	95.3	95.3
H151	C15	C9	H152	239.9	239.9
C11	C10	C9	C15	312.9	312.9
C11	C10	C9	H9	70.5	70.5
C9	C10	C11	H101	120.0	120.0
C9	C10	C11	H102	240.5	240.5
C10	C11	C12	C13	176.4	176.4
C10	C11	C12	C14	54.3	54.3
C12	C11	C10	H111	240.0	240.0
C12	C11	C10	H112	117.9	117.9
C10	C11	C12	H12	296.1	296.1
H101	C10	C11	H102	120.5	120.5
H111	C11	C10	H112	237.9	237.9
C12	C11	C10	H101	227.7	227.7
C12	C11	C10	H102	107.2	107.2
C10	C11	C12	H111	120.0	120.0
C10	C11	C12	H112	242.1	242.1
C13	C12	C11	C14	122.2	122.2
C13	C12	C11	H12	240.3	240.3
C11	C12	C13	H131	311.3	311.3
C11	C12	C13	H132	71.3	71.3
C11	C12	C13	H133	191.3	191.3
C11	C12	C14	C15	325.5	325.5
C14	C12	C11	H12	118.2	118.2
C11	C12	C14	H141	85.5	85.5
C11	C12	C14	H142	207.4	207.4
H111	C11	C12	H112	122.1	122.1
C11	C12	C13	C14	236.5	236.5
C13	C12	C11	H111	56.4	56.4
C13	C12	C11	H112	294.3	294.3
C11	C12	C13	H12	118.2	118.2
C13	C12	C14	C15	203.3	203.3
C14	C12	C13	H12	241.7	241.7
C13	C12	C14	H141	323.3	323.3
C13	C12	C14	H142	85.1	85.1
H131	C13	C12	H132	240.0	240.0
H131	C13	C12	H133	120.0	120.0
H132	C13	C12	H133	240.0	240.0
C9	C15	C14	C12	337.1	337.1
C11	C12	C14	C13	122.2	122.2
C14	C12	C11	H111	294.2	294.2
C14	C12	C11	H112	172.1	172.1
C11	C12	C14	H12	241.9	241.9
C13	C12	C14	H12	119.7	119.7
C14	C12	C13	H131	74.8	74.8
C14	C12	C13	H132	194.8	194.8
C14	C12	C13	H133	314.7	314.8
C12	C14	C15	H151	217.1	217.1
C12	C14	C15	H152	97.0	97.0
C15	C14	C12	H141	240.0	240.0
C15	C14	C12	H142	118.1	118.1
H141	C14	C12	H142	238.1	238.1
C14	C15	C9	H9	312.0	312.0
C9	C15	C14	H151	120.0	120.0
C9	C15	C14	H152	240.1	240.1
C15	C14	C12	H12	83.6	83.6
C12	C14	C15	H141	120.0	120.0
C12	C14	C15	H142	241.9	241.9
H151	C15	C14	H152	120.1	120.1
H141	C14	C15	H142	121.9	121.9
C8	N3	C7	H3	180.0	180.0
C16	C7	N3	C6	236.7	236.7
N3	C7	C16	C17	276.4	276.4
C16	C7	N3	H7	117.4	117.4
N3	C7	C16	H161	36.4	36.4
N3	C7	C16	H162	156.4	156.4
N3	C7	C6	O2	156.1	156.1
N3	C7	C6	N2	337.1	337.1
C6	C7	N3	H7	240.7	240.7
N3	C7	C16	C6	120.9	120.9
C16	C7	N3	H3	337.4	337.4
N3	C7	C16	H7	240.1	240.1
C16	C7	C6	O2	278.7	278.7
C16	C7	C6	N2	99.8	99.8
C6	C7	C16	H7	119.2	119.2
C7	C16	C17	S	186.3	186.3
C17	C16	C7	H161	240.0	240.0
C17	C16	C7	H162	120.0	120.0
C7	C16	C17	H171	306.3	306.3
C7	C16	C17	H172	67.9	67.9
H161	C16	C7	H162	240.0	240.0
N3	C7	C6	C16	237.4	237.4
C6	C7	N3	H3	100.7	100.7
N3	C7	C6	H7	120.0	120.0
C6	C7	C16	C17	155.5	155.5
C16	C7	C6	H7	242.7	242.7
C6	C7	C16	H161	275.5	275.5
C6	C7	C16	H162	35.5	35.5
O2	C6	C7	N2	179.0	179.0
C7	C6	N2	C5	177.3	177.3
C7	C6	N2	H2	357.3	357.3
C17	C16	C7	C6	155.5	155.5
C17	C16	C7	H7	36.3	36.3
C7	C16	C17	H161	120.0	120.0
C7	C16	C17	H162	240.0	240.0
C16	C17	S	C18	281.0	281.0
S	C17	C16	H171	240.0	240.0
S	C17	C16	H172	118.4	118.4
H161	C16	C17	H162	120.0	120.0
H171	C17	C16	H172	238.5	238.5
S	C17	C16	H161	66.3	66.3
S	C17	C16	H162	306.3	306.3
C16	C17	S	H171	120.0	120.0
C16	C17	S	H172	241.6	241.6
C17	S	C18	H181	67.9	68.0
C17	S	C18	H182	187.9	187.9
C17	S	C18	H183	308.0	308.0
H171	C17	S	H172	121.5	121.5
C18	S	C17	H171	160.9	160.9
C18	S	C17	H172	39.4	39.4
H181	C18	S	H182	240.0	240.0
H181	C18	S	H183	120.0	120.0
H182	C18	S	H183	240.0	240.0
C7	C6	O2	N2	181.1	181.1
O2	C6	C7	H7	36.1	36.1
O2	C6	N2	C5	358.4	358.4
O2	C6	N2	H2	178.4	178.4
C7	C6	N2	O2	178.9	178.9
N2	C6	C7	H7	217.1	217.1
C6	N2	C5	C1	10.2	10.2
C6	N2	C5	C4	192.6	192.6
C5	N2	C6	H2	180.0	180.0
C6	N2	C5	H2	180.0	180.0
C1	C5	N2	C4	177.6	177.6
N2	C5	C1	C2	181.6	181.6
N2	C5	C1	H1	1.6	1.6
N2	C5	C4	C3	178.3	178.3
N2	C5	C4	H4	358.4	358.4
N2	C5	C1	C4	182.5	182.5
C1	C5	N2	H2	190.2	190.2
C1	C5	C4	C3	0.5	0.5
C1	C5	C4	H4	180.6	180.6
C5	C1	C2	N1	1.8	1.8
C2	C1	C5	H1	180.0	180.0
C5	C1	C2	HA	181.8	181.7
N2	C5	C4	C1	177.8	177.8
C4	C5	N2	H2	12.6	12.6
C4	C5	C1	C2	359.1	359.1
C4	C5	C1	H1	179.1	179.1
N1	C3	C4	C5	358.9	358.9
C3	C4	C5	H4	180.0	180.0
C5	C4	C3	HB	178.9	178.9
C2	C1	C5	C4	359.1	359.1
C5	C1	C2	H1	180.0	180.0
C1	C2	N1	C3	357.7	357.7
N1	C2	C1	HA	180.0	180.0
N1	C2	C1	H1	181.8	181.8
C1	C2	N1	HA	180.0	180.0
C2	N1	C3	C4	2.0	2.0
C2	N1	C3	HB	182.0	182.0
C5	C4	C3	N1	358.9	358.9
C3	N1	C2	HA	177.7	177.7
N1	C3	C4	H4	178.9	178.9
C4	C3	N1	HB	180.0	180.0
C5	C4	C3	H4	180.0	180.0
N1	C3	C4	HB	180.0	180.0
H9	C9	C8	N3	210.6	210.6
C8	C9	H9	C10	238.1	238.1
C8	C9	H9	C15	119.4	119.4
C10	C9	H9	C15	241.4	241.4
H9	C9	C10	C11	70.5	70.5
H9	C9	C10	H101	190.5	190.5
H9	C9	C10	H102	311.1	311.1
H9	C9	C15	C14	312.0	312.0
H9	C9	C15	H151	72.0	72.0
H9	C9	C15	H152	192.1	192.1
C8	N3	H3	C7	180.0	180.0
H3	N3	C7	C16	337.4	337.4
H3	N3	C7	C6	100.7	100.7
H3	N3	C7	H7	220.0	220.0
H101	C10	C9	C15	72.9	72.9
C9	C10	H101	C11	238.9	238.9
H101	C10	C9	H9	190.5	190.5
C9	C10	H101	H102	119.5	119.5
H101	C10	C11	C12	227.7	227.7
C11	C10	H101	H102	240.5	240.5
H101	C10	C11	H111	347.7	347.7
H101	C10	C11	H112	109.8	109.8
H102	C10	C9	C15	193.4	193.4
C9	C10	H102	C11	120.7	120.7
H102	C10	C9	H9	311.1	311.1
C9	C10	H102	H101	240.4	240.4
H102	C10	C11	C12	107.2	107.2
C11	C10	H102	H101	119.7	119.7
H102	C10	C11	H111	227.2	227.2
H102	C10	C11	H112	349.3	349.3
C9	C15	H151	C14	239.8	239.8
H151	C15	C9	H9	72.0	72.0
C9	C15	H151	H152	119.9	119.9
C14	C15	H151	H152	240.1	240.1
H151	C15	C14	H141	97.1	97.1
H151	C15	C14	H142	335.3	335.3
C9	C15	H152	C14	120.1	120.1
H152	C15	C9	H9	192.1	192.1
C9	C15	H152	H151	240.0	240.0
C14	C15	H152	H151	119.9	119.9
H152	C15	C14	H141	337.0	337.0
H152	C15	C14	H142	215.2	215.2
C10	C11	H111	C12	236.0	236.0
H111	C11	C10	H101	347.7	347.7
H111	C11	C10	H102	227.2	227.2
C10	C11	H111	H112	118.0	118.0
H111	C11	C12	C13	56.4	56.4
H111	C11	C12	C14	294.2	294.2
C12	C11	H111	H112	242.0	242.0
H111	C11	C12	H12	176.1	176.1
C10	C11	H112	C12	122.7	122.7
H112	C11	C10	H101	109.8	109.8
H112	C11	C10	H102	349.3	349.3
C10	C11	H112	H111	241.3	241.3
H112	C11	C12	C13	294.3	294.3
H112	C11	C12	C14	172.1	172.1
C12	C11	H112	H111	118.6	118.6
H112	C11	C12	H12	54.0	54.0
C11	C12	H12	C13	240.4	240.4
C11	C12	H12	C14	120.9	120.9
H12	C12	C11	H111	176.1	176.1
H12	C12	C11	H112	54.0	54.0
C13	C12	H12	C14	240.5	240.5
H12	C12	C13	H131	193.1	193.1
H12	C12	C13	H132	313.1	313.1
H12	C12	C13	H133	73.0	73.1
H12	C12	C14	C15	83.6	83.6
H12	C12	C14	H141	203.6	203.6
H12	C12	C14	H142	325.4	325.4
H131	C13	C12	C14	74.8	74.8
H131	C13	C12	H12	193.1	193.1
C12	C13	H131	H132	120.0	120.0
C12	C13	H131	H133	240.0	240.0
H132	C13	H131	H133	120.0	120.0
H132	C13	C12	C14	194.8	194.8
H132	C13	C12	H12	313.1	313.1
C12	C13	H132	H131	240.0	240.0
C12	C13	H132	H133	120.0	120.0
H131	C13	H132	H133	240.0	240.0
H133	C13	C12	C14	314.7	314.8
H133	C13	C12	H12	73.0	73.1
C12	C13	H133	H131	120.0	120.0
C12	C13	H133	H132	240.0	240.0
H131	C13	H133	H132	120.0	120.0
C12	C14	H141	C15	236.5	236.5
H141	C14	C12	H12	203.6	203.6
C12	C14	H141	H142	118.3	118.3
H141	C14	C15	H151	97.1	97.1
H141	C14	C15	H152	337.0	337.0
C15	C14	H141	H142	241.7	241.7
C12	C14	H142	C15	122.3	122.3
H142	C14	C12	H12	325.4	325.4
C12	C14	H142	H141	241.2	241.2
H142	C14	C15	H151	335.3	335.3
H142	C14	C15	H152	215.2	215.2
C15	C14	H142	H141	118.8	118.8
N3	C7	H7	C16	120.4	120.4
N3	C7	H7	C6	241.4	241.4
H7	C7	N3	H3	220.0	220.0
C16	C7	H7	C6	121.1	121.1
H7	C7	C16	C17	36.3	36.3
H7	C7	C16	H161	156.3	156.3
H7	C7	C16	H162	276.3	276.3
H7	C7	C6	O2	36.1	36.1
H7	C7	C6	N2	217.1	217.1
H161	C16	C7	C6	275.5	275.5
C7	C16	H161	C17	240.0	240.0
H161	C16	C7	H7	156.3	156.3
C7	C16	H161	H162	120.0	120.0
H161	C16	C17	S	66.3	66.3
C17	C16	H161	H162	240.0	240.0
H161	C16	C17	H171	186.3	186.3
H161	C16	C17	H172	307.9	307.9
H162	C16	C7	C6	35.5	35.5
C7	C16	H162	C17	120.0	120.0
H162	C16	C7	H7	276.3	276.3
C7	C16	H162	H161	240.0	240.0
H162	C16	C17	S	306.3	306.3
C17	C16	H162	H161	120.0	120.0
H162	C16	C17	H171	66.3	66.3
H162	C16	C17	H172	187.8	187.8
C16	C17	H171	S	237.1	237.1
H171	C17	C16	H161	186.3	186.3
H171	C17	C16	H162	66.3	66.3
C16	C17	H171	H172	118.5	118.5
H171	C17	S	C18	160.9	160.9
S	C17	H171	H172	241.5	241.5
C16	C17	H172	S	121.9	121.9
H172	C17	C16	H161	307.9	307.9
H172	C17	C16	H162	187.8	187.8
C16	C17	H172	H171	241.0	241.0
H172	C17	S	C18	39.4	39.4
S	C17	H172	H171	119.0	119.0
S	C18	H181	H182	120.0	120.0
S	C18	H181	H183	240.0	240.0
H182	C18	H181	H183	120.0	120.0
S	C18	H182	H181	240.0	240.0
S	C18	H182	H183	120.0	120.0
H181	C18	H182	H183	240.0	240.0
S	C18	H183	H181	120.0	120.0
S	C18	H183	H182	240.0	240.0
H181	C18	H183	H182	120.0	120.0
C6	N2	H2	C5	180.0	180.0
H2	N2	C5	C1	190.2	190.2
H2	N2	C5	C4	12.6	12.6
H1	C1	C5	C4	179.1	179.1
C5	C1	H1	C2	180.0	180.0
H1	C1	C2	N1	181.8	181.8
H1	C1	C2	HA	1.8	1.7
C5	C4	H4	C3	180.0	180.0
H4	C4	C3	HB	358.9	358.9
C1	C2	HA	N1	180.0	180.0
HA	C2	C1	H1	1.8	1.7
HA	C2	N1	C3	177.7	177.7
N1	C3	HB	C4	180.0	180.0
HB	C3	C4	H4	358.9	358.9