PDB Chemical Component CM6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CM6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.227	1.213
C1	N1	1.332	1.347
C1	C7	1.469	1.507
N1	C2	1.356	1.395
N1	H1	1.000	0.970
C2	C3	1.399	1.395
C2	C6	1.420	1.394
C3	C4	1.351	1.380
C3	H3	1.080	1.080
C4	N2	1.336	1.320
C4	H4	1.080	1.079
N2	C5	1.344	1.320
C5	C6	1.335	1.380
C5	H5	1.081	1.080
C6	H6	1.080	1.080
C7	N3	1.473	1.466
C7	C14	1.507	1.506
C7	H7	1.100	1.090
N3	S1	1.688	1.656
N3	HA	1.000	0.969
S1	O2	1.418	1.421
S1	O3	1.431	1.421
S1	C8	1.781	1.761
C8	C9	1.390	1.355
C8	C13	1.449	1.420
C9	C10	1.426	1.395
C9	H9	1.080	1.081
C10	C11	1.380	1.354
C10	H10	1.080	1.080
C11	C12	1.446	1.420
C11	H11	1.080	1.080
C12	N4	1.332	1.332
C12	C13	1.481	1.460
N4	S2	1.573	1.568
S2	N5	1.570	1.566
N5	C13	1.333	1.331
C14	C15	1.407	1.382
C14	C19	1.415	1.382
C15	C16	1.407	1.383
C15	H15	1.080	1.080
C16	C17	1.407	1.382
C16	H16	1.080	1.080
C17	C18	1.411	1.382
C17	H17	1.080	1.080
C18	C19	1.404	1.383
C18	H18	1.080	1.080
C19	H19	1.080	1.080

Bond Angles for CM6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	N1	123.4	120.0
O1	C1	C7	119.9	120.0
N1	C1	C7	116.7	120.0
C1	N1	C2	125.6	120.0
C1	N1	H1	117.2	120.0
C1	C7	N3	108.4	109.5
C1	C7	C14	108.1	109.5
C1	C7	H7	113.0	109.5
C2	N1	H1	117.2	120.0
N1	C2	C3	117.1	120.8
N1	C2	C6	122.3	120.9
C3	C2	C6	120.5	118.3
C2	C3	C4	118.1	119.1
C2	C3	H3	120.9	120.5
C2	C6	C5	118.3	119.1
C2	C6	H6	120.9	120.4
C4	C3	H3	120.9	120.5
C3	C4	N2	119.0	120.8
C3	C4	H4	120.5	119.6
N2	C4	H4	120.5	119.6
C4	N2	C5	125.0	121.9
N2	C5	C6	119.0	120.8
N2	C5	H5	120.5	119.6
C6	C5	H5	120.5	119.6
C5	C6	H6	120.8	120.5
N3	C7	C14	114.5	109.4
N3	C7	H7	106.4	109.5
C7	N3	S1	119.6	120.0
C7	N3	HA	106.2	120.0
C14	C7	H7	106.7	109.5
C7	C14	C15	118.3	120.0
C7	C14	C19	121.6	120.0
S1	N3	HA	106.2	120.1
N3	S1	O2	105.1	105.8
N3	S1	O3	103.7	105.8
N3	S1	C8	111.1	107.4
O2	S1	O3	122.0	125.3
O2	S1	C8	106.9	105.8
O3	S1	C8	107.8	105.8
S1	C8	C9	120.5	120.0
S1	C8	C13	119.8	120.0
C9	C8	C13	119.8	120.0
C8	C9	C10	121.4	121.6
C8	C9	H9	119.3	119.2
C8	C13	C12	118.6	118.4
C8	C13	N5	129.5	129.5
C10	C9	H9	119.3	119.2
C9	C10	C11	121.4	121.5
C9	C10	H10	119.3	119.3
C11	C10	H10	119.3	119.2
C10	C11	C12	120.1	120.0
C10	C11	H11	119.9	120.0
C12	C11	H11	119.9	120.0
C11	C12	N4	129.7	129.5
C11	C12	C13	118.6	118.5
N4	C12	C13	111.7	112.0
C12	N4	S2	106.4	106.2
C12	C13	N5	111.9	112.1
N4	S2	N5	103.7	103.4
S2	N5	C13	106.3	106.3
C15	C14	C19	120.1	120.0
C14	C15	C16	119.8	120.0
C14	C15	H15	120.1	120.0
C14	C19	C18	120.0	120.0
C14	C19	H19	120.0	120.0
C16	C15	H15	120.1	120.0
C15	C16	C17	120.1	120.0
C15	C16	H16	119.9	119.9
C17	C16	H16	120.0	120.1
C16	C17	C18	120.2	120.0
C16	C17	H17	119.9	120.0
C18	C17	H17	119.9	120.0
C17	C18	C19	119.8	120.0
C17	C18	H18	120.1	120.0
C19	C18	H18	120.1	120.0
C18	C19	H19	120.0	120.0

Torsion Angles for CM6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	O1	C7	181.1	180.3
O1	C1	N1	C2	2.2	354.6
O1	C1	N1	H1	182.2	174.7
O1	C1	C7	N3	322.7	0.0
O1	C1	C7	C14	87.3	120.0
O1	C1	C7	H7	205.1	240.0
O1	C1	N1	C7	179.0	179.7
N1	C1	C7	N3	141.7	179.7
N1	C1	C7	C14	266.3	299.7
N1	C1	C7	H7	24.1	59.7
C2	N1	C1	H1	180.0	179.9
C1	N1	C2	C3	181.6	148.1
C1	N1	C2	C6	2.3	327.7
O1	C1	C7	N1	181.0	180.3
C7	C1	N1	C2	183.2	174.9
C7	C1	N1	H1	3.2	355.0
N3	C7	C1	C14	235.4	240.0
N3	C7	C1	H7	117.6	120.0
C1	C7	N3	S1	285.9	216.9
C1	C7	N3	HA	45.9	36.9
C14	C7	C1	H7	242.2	240.0
C1	C7	C14	C15	113.1	100.0
C1	C7	C14	C19	293.9	279.8
C2	N1	C1	C7	183.2	174.9
C1	N1	C2	H1	180.0	180.1
C3	C2	N1	C6	179.3	180.3
N1	C2	C3	C4	180.7	180.0
N1	C2	C3	H3	0.7	359.9
N1	C2	C6	C5	179.0	179.8
N1	C2	C6	H6	359.1	0.2
H1	N1	C1	C7	3.2	355.0
C1	N1	H1	C2	180.0	179.9
H1	N1	C2	C3	1.6	328.0
H1	N1	C2	C6	182.3	147.7
C3	C2	N1	H1	1.6	328.0
N1	C2	C3	C6	180.7	179.7
C3	C2	C6	C5	359.8	359.5
C3	C2	C6	H6	179.8	179.9
C4	C3	C2	H3	180.0	180.1
C2	C3	C4	N2	0.2	360.0
C2	C3	C4	H4	180.2	180.0
C6	C2	N1	H1	182.3	147.7
N1	C2	C6	C3	179.3	180.3
C6	C2	C3	C4	360.0	0.3
C6	C2	C3	H3	180.0	180.2
N2	C5	C6	C2	0.2	0.5
C2	C6	C5	H5	180.2	180.3
C5	C6	C2	H6	180.0	179.6
C4	C3	C2	C6	360.0	0.3
C2	C3	C4	H3	180.0	179.9
N2	C4	C3	H4	180.0	180.0
C3	C4	N2	C5	359.7	360.0
H3	C3	C2	C6	180.0	180.2
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	N2	180.3	180.1
H3	C3	C4	H4	0.3	0.1
N2	C4	C3	H3	180.3	180.1
C3	C4	N2	H4	180.0	180.0
C4	N2	C5	C6	0.0	359.8
C4	N2	C5	H5	180.1	180.0
H4	C4	C3	H3	0.3	0.1
C3	C4	H4	N2	180.0	180.0
H4	C4	N2	C5	179.7	180.0
C2	C6	C5	N2	0.2	0.5
C5	N2	C4	H4	179.7	180.0
C6	C5	N2	H5	180.0	179.8
N2	C5	C6	H6	180.2	180.0
C2	C6	C5	H6	180.0	180.4
N2	C5	C6	H5	180.0	180.2
N2	C5	H5	C6	180.0	179.8
H5	C5	C6	H6	0.2	359.9
C2	C6	H6	C5	180.0	179.6
H6	C6	C5	H5	0.2	359.9
C1	C7	N3	C14	120.7	120.0
C1	C7	N3	H7	238.2	240.0
C14	C7	N3	H7	117.5	120.0
N3	C7	C14	C15	233.9	220.0
N3	C7	C14	C19	54.8	39.8
S1	N3	C7	HA	240.0	180.0
C7	N3	S1	O2	183.7	181.8
C7	N3	S1	O3	312.8	47.1
C7	N3	S1	C8	68.4	294.4
C1	C7	C14	N3	239.2	240.0
C1	C7	C14	H7	121.8	120.0
N3	C7	C14	H7	242.6	240.0
C14	C7	N3	S1	165.2	96.9
C14	C7	N3	HA	285.2	276.9
C15	C14	C7	C19	179.1	180.2
C7	C14	C15	C16	180.6	180.1
C7	C14	C15	H15	0.6	360.0
C7	C14	C19	C18	179.3	179.7
C7	C14	C19	H19	359.3	0.2
C1	C7	H7	N3	118.8	120.0
C1	C7	H7	C14	241.4	240.0
N3	C7	H7	C14	122.6	120.0
H7	C7	N3	S1	47.6	336.9
H7	C7	N3	HA	167.6	156.9
H7	C7	C14	C15	351.3	340.0
H7	C7	C14	C19	172.1	159.7
S1	N3	C7	C14	165.2	96.9
S1	N3	C7	H7	47.6	336.9
C7	N3	S1	HA	120.0	180.0
O2	S1	N3	O3	230.8	134.8
O2	S1	N3	C8	115.2	247.4
O3	S1	N3	C8	244.4	112.7
N3	S1	C8	C9	244.9	114.9
N3	S1	C8	C13	64.1	294.6
HA	N3	C7	C14	285.2	276.9
HA	N3	C7	H7	167.6	156.9
C7	N3	HA	S1	231.6	180.0
HA	N3	S1	O2	63.7	1.8
HA	N3	S1	O3	192.9	227.1
HA	N3	S1	C8	308.4	114.4
O2	S1	N3	HA	63.7	1.8
N3	S1	O2	O3	117.4	236.9
N3	S1	O2	C8	241.9	113.7
O3	S1	O2	C8	124.5	236.8
O2	S1	C8	C9	130.7	227.5
O2	S1	C8	C13	309.9	47.2
O3	S1	N3	HA	192.9	227.1
N3	S1	O3	O2	241.9	123.1
N3	S1	O3	C8	117.9	246.2
O2	S1	O3	C8	235.9	123.1
O3	S1	C8	C9	357.9	2.3
O3	S1	C8	C13	177.1	182.0
C8	S1	N3	HA	308.4	114.4
N3	S1	C8	O2	114.2	247.4
N3	S1	C8	O3	247.0	112.6
O2	S1	C8	O3	132.8	225.2
C9	C8	S1	C13	180.8	180.3
S1	C8	C9	C10	179.3	180.0
S1	C8	C9	H9	359.3	359.9
S1	C8	C13	C12	180.8	179.8
S1	C8	C13	N5	0.6	0.6
S1	C8	C9	C13	179.2	179.7
C9	C8	C13	C12	0.0	359.5
C9	C8	C13	N5	179.8	180.3
C10	C9	C8	H9	180.0	180.1
C8	C9	C10	C11	359.8	360.0
C8	C9	C10	H10	179.8	179.9
S1	C8	C13	C9	180.8	180.3
C13	C8	C9	C10	0.1	0.3
C13	C8	C9	H9	180.2	180.2
C11	C12	C13	C8	359.9	0.5
N4	C12	C13	C8	179.8	180.3
C12	C13	C8	N5	180.2	179.2
S2	N5	C13	C8	180.2	179.6
C10	C9	C8	C13	0.1	0.3
C8	C9	C10	H9	180.0	179.9
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	0.2	0.0
C9	C10	C11	H11	180.1	180.0
H9	C9	C8	C13	180.2	180.2
C8	C9	H9	C10	180.0	180.1
H9	C9	C10	C11	179.8	180.0
H9	C9	C10	H10	359.8	360.0
C11	C10	C9	H9	179.8	180.0
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	N4	180.1	180.0
C10	C11	C12	C13	360.0	359.7
H10	C10	C9	H9	359.8	360.0
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	180.2	180.0
H10	C10	C11	H11	0.1	360.0
C8	C13	C12	C11	359.9	0.5
C12	C11	C10	H10	180.2	180.0
C10	C11	C12	H11	180.0	179.9
N4	C12	C11	C13	180.2	180.2
C11	C12	N4	S2	179.8	180.0
C11	C12	C13	N5	180.1	179.8
H11	C11	C10	H10	0.1	360.0
C10	C11	H11	C12	180.0	180.1
H11	C11	C12	N4	0.2	0.0
H11	C11	C12	C13	180.0	179.8
C8	C13	C12	N4	179.8	180.3
N4	C12	C11	H11	0.2	0.0
C11	C12	N4	C13	179.8	179.8
N4	C12	C13	N5	360.0	359.6
C12	N4	S2	N5	0.0	0.0
C8	C13	C12	N5	179.8	180.7
C13	C12	C11	H11	180.0	179.8
C11	C12	C13	N4	180.1	180.2
C13	C12	N4	S2	360.0	0.2
S2	N5	C13	C12	0.0	0.4
S2	N4	C12	C13	360.0	0.2
N4	S2	N5	C13	360.0	359.7
C8	C13	N5	S2	180.2	179.6
C12	C13	N5	S2	0.0	0.4
C8	C13	N5	C12	180.2	179.2
C15	C14	C7	H7	351.3	340.0
C7	C14	C15	C19	180.8	179.8
C15	C14	C19	C18	0.2	359.5
C15	C14	C19	H19	180.2	180.0
C16	C15	C14	H15	180.0	180.1
C14	C15	C16	C17	0.1	359.9
C14	C15	C16	H16	180.1	180.0
C19	C14	C7	H7	172.1	159.7
C7	C14	C19	C15	179.1	180.2
C19	C14	C15	C16	359.8	0.3
C19	C14	C15	H15	179.8	180.2
C17	C18	C19	C14	360.0	0.5
C14	C19	C18	H18	180.0	180.3
C18	C19	C14	H19	180.0	179.5
C16	C15	C14	C19	359.8	0.3
C14	C15	C16	H15	180.0	179.9
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	C18	0.1	0.0
C15	C16	C17	H17	180.1	180.0
H15	C15	C14	C19	179.8	180.2
C14	C15	H15	C16	180.0	180.1
H15	C15	C16	C17	180.1	180.0
H15	C15	C16	H16	0.1	0.1
C17	C16	C15	H15	180.1	180.0
C15	C16	C17	H16	180.0	180.0
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	C19	359.9	359.8
C16	C17	C18	H18	179.9	180.0
H16	C16	C15	H15	0.1	0.1
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	180.1	180.0
H16	C16	C17	H17	0.1	360.0
C14	C19	C18	C17	360.0	0.5
C18	C17	C16	H16	180.1	180.0
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	H18	180.0	179.8
C17	C18	C19	H19	180.0	180.0
H17	C17	C16	H16	0.1	360.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	179.9	179.8
H17	C17	C18	H18	359.9	360.0
C14	C19	C18	H19	180.0	180.5
C19	C18	C17	H17	179.9	179.8
C17	C18	C19	H18	180.0	180.2
H18	C18	C17	H17	359.9	360.0
C17	C18	H18	C19	180.0	179.8
H18	C18	C19	H19	360.0	359.8
C14	C19	H19	C18	180.0	179.5
H19	C19	C18	H18	360.0	359.8