PDB Chemical Component CLK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CLK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
CL1A |
1.721 |
1.802 |
| C1 |
CL1B |
1.758 |
1.803 |
| C1 |
C2 |
1.589 |
1.506 |
| C1 |
H1 |
1.115 |
1.090 |
| C2 |
O2 |
1.234 |
1.212 |
| C2 |
N2 |
1.351 |
1.347 |
| N2 |
C3 |
1.472 |
1.465 |
| N2 |
H2 |
1.020 |
0.969 |
| C3 |
C4 |
1.528 |
1.529 |
| C3 |
C5 |
1.563 |
1.531 |
| C3 |
H3 |
1.116 |
1.090 |
| C4 |
O4 |
1.476 |
1.428 |
| C4 |
H4C1 |
1.115 |
1.090 |
| C4 |
H4C2 |
1.115 |
1.090 |
| O4 |
H4 |
0.950 |
0.967 |
| C5 |
O5 |
1.430 |
1.428 |
| C5 |
C6 |
1.575 |
1.507 |
| C5 |
H5 |
1.115 |
1.090 |
| O5 |
HA |
0.950 |
0.967 |
| C6 |
C7 |
1.517 |
1.383 |
| C6 |
C11 |
1.435 |
1.381 |
| C7 |
C8 |
1.424 |
1.380 |
| C7 |
H7 |
1.115 |
1.079 |
| C8 |
C9 |
1.388 |
1.388 |
| C8 |
H8 |
1.103 |
1.080 |
| C9 |
N9 |
1.495 |
1.397 |
| C9 |
C10 |
1.455 |
1.390 |
| N9 |
H9N1 |
1.019 |
0.970 |
| N9 |
H9N2 |
1.020 |
0.969 |
| C10 |
C11 |
1.425 |
1.382 |
| C10 |
H10 |
1.115 |
1.080 |
| C11 |
H11 |
1.103 |
1.080 |
Bond Angles for CLK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1A |
C1 |
CL1B |
106.7 |
109.4 |
| CL1A |
C1 |
C2 |
111.5 |
109.5 |
| CL1A |
C1 |
H1 |
112.0 |
109.5 |
| CL1B |
C1 |
C2 |
102.3 |
109.5 |
| CL1B |
C1 |
H1 |
111.9 |
109.5 |
| C2 |
C1 |
H1 |
111.9 |
109.5 |
| C1 |
C2 |
O2 |
120.5 |
120.0 |
| C1 |
C2 |
N2 |
110.4 |
120.0 |
| O2 |
C2 |
N2 |
129.1 |
120.1 |
| C2 |
N2 |
C3 |
125.1 |
119.9 |
| C2 |
N2 |
H2 |
117.5 |
120.1 |
| C3 |
N2 |
H2 |
117.4 |
120.0 |
| N2 |
C3 |
C4 |
111.7 |
109.5 |
| N2 |
C3 |
C5 |
110.9 |
109.4 |
| N2 |
C3 |
H3 |
106.0 |
109.4 |
| C4 |
C3 |
C5 |
115.4 |
109.5 |
| C4 |
C3 |
H3 |
106.0 |
109.5 |
| C3 |
C4 |
O4 |
107.1 |
109.5 |
| C3 |
C4 |
H4C1 |
113.1 |
109.5 |
| C3 |
C4 |
H4C2 |
113.1 |
109.5 |
| C5 |
C3 |
H3 |
106.0 |
109.4 |
| C3 |
C5 |
O5 |
108.4 |
109.4 |
| C3 |
C5 |
C6 |
116.9 |
109.5 |
| C3 |
C5 |
H5 |
107.3 |
109.4 |
| O4 |
C4 |
H4C1 |
113.1 |
109.4 |
| O4 |
C4 |
H4C2 |
113.1 |
109.4 |
| C4 |
O4 |
H4 |
107.1 |
106.8 |
| H4C1 |
C4 |
H4C2 |
97.4 |
109.5 |
| O5 |
C5 |
C6 |
109.1 |
109.5 |
| O5 |
C5 |
H5 |
107.3 |
109.4 |
| C5 |
O5 |
HA |
108.4 |
106.8 |
| C6 |
C5 |
H5 |
107.3 |
109.5 |
| C5 |
C6 |
C7 |
120.0 |
119.9 |
| C5 |
C6 |
C11 |
122.0 |
119.9 |
| C7 |
C6 |
C11 |
117.7 |
120.2 |
| C6 |
C7 |
C8 |
120.5 |
120.0 |
| C6 |
C7 |
H7 |
108.3 |
119.9 |
| C6 |
C11 |
C10 |
120.9 |
120.1 |
| C6 |
C11 |
H11 |
119.6 |
120.0 |
| C8 |
C7 |
H7 |
108.3 |
120.0 |
| C7 |
C8 |
C9 |
118.7 |
120.0 |
| C7 |
C8 |
H8 |
120.6 |
120.0 |
| C9 |
C8 |
H8 |
120.6 |
120.0 |
| C8 |
C9 |
N9 |
124.6 |
120.1 |
| C8 |
C9 |
C10 |
123.5 |
119.9 |
| N9 |
C9 |
C10 |
111.9 |
120.0 |
| C9 |
N9 |
H9N1 |
124.6 |
120.0 |
| C9 |
N9 |
H9N2 |
106.8 |
120.0 |
| C9 |
C10 |
C11 |
118.7 |
119.9 |
| C9 |
C10 |
H10 |
108.9 |
120.1 |
| H9N1 |
N9 |
H9N2 |
106.9 |
119.9 |
| C11 |
C10 |
H10 |
108.9 |
120.1 |
| C10 |
C11 |
H11 |
119.5 |
119.9 |
Torsion Angles for CLK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL1B |
C1 |
CL1A |
C2 |
249.1 |
240.0 |
| CL1B |
C1 |
CL1A |
H1 |
122.8 |
120.0 |
| C2 |
C1 |
CL1A |
H1 |
233.7 |
239.9 |
| CL1A |
C1 |
C2 |
O2 |
321.5 |
0.1 |
| CL1A |
C1 |
C2 |
N2 |
143.0 |
180.0 |
| CL1A |
C1 |
CL1B |
C2 |
117.2 |
120.0 |
| CL1A |
C1 |
CL1B |
H1 |
237.2 |
240.0 |
| C2 |
C1 |
CL1B |
H1 |
120.0 |
120.0 |
| CL1B |
C1 |
C2 |
O2 |
75.2 |
120.0 |
| CL1B |
C1 |
C2 |
N2 |
256.7 |
300.0 |
| CL1A |
C1 |
C2 |
CL1B |
246.3 |
240.0 |
| CL1A |
C1 |
C2 |
H1 |
126.3 |
120.0 |
| CL1B |
C1 |
C2 |
H1 |
240.0 |
240.0 |
| O2 |
C2 |
C1 |
N2 |
178.5 |
180.1 |
| C1 |
C2 |
N2 |
C3 |
181.9 |
180.0 |
| C1 |
C2 |
N2 |
H2 |
1.9 |
0.0 |
| CL1A |
C1 |
H1 |
CL1B |
119.7 |
120.0 |
| CL1A |
C1 |
H1 |
C2 |
233.9 |
239.9 |
| CL1B |
C1 |
H1 |
C2 |
114.2 |
120.0 |
| H1 |
C1 |
C2 |
O2 |
195.2 |
240.0 |
| H1 |
C1 |
C2 |
N2 |
16.7 |
59.9 |
| O2 |
C2 |
C1 |
H1 |
195.2 |
240.0 |
| C1 |
C2 |
O2 |
N2 |
181.8 |
179.9 |
| O2 |
C2 |
N2 |
C3 |
3.6 |
359.9 |
| O2 |
C2 |
N2 |
H2 |
183.6 |
179.9 |
| N2 |
C2 |
C1 |
H1 |
16.7 |
59.9 |
| C1 |
C2 |
N2 |
O2 |
178.3 |
180.1 |
| C3 |
N2 |
C2 |
H2 |
180.0 |
180.0 |
| C2 |
N2 |
C3 |
C4 |
264.4 |
270.0 |
| C2 |
N2 |
C3 |
C5 |
134.2 |
150.0 |
| C2 |
N2 |
C3 |
H3 |
19.5 |
30.1 |
| C2 |
N2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
N2 |
C5 |
130.3 |
120.0 |
| C4 |
C3 |
N2 |
H3 |
244.9 |
239.9 |
| N2 |
C3 |
C4 |
O4 |
52.9 |
300.0 |
| N2 |
C3 |
C4 |
H4C1 |
287.6 |
60.0 |
| N2 |
C3 |
C4 |
H4C2 |
178.2 |
180.1 |
| C5 |
C3 |
N2 |
H3 |
114.7 |
119.9 |
| N2 |
C3 |
C5 |
O5 |
182.3 |
60.1 |
| N2 |
C3 |
C5 |
C6 |
58.5 |
300.0 |
| N2 |
C3 |
C5 |
H5 |
297.9 |
180.0 |
| C2 |
N2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
N2 |
C3 |
C4 |
84.4 |
90.0 |
| H2 |
N2 |
C3 |
C5 |
314.2 |
330.0 |
| H2 |
N2 |
C3 |
H3 |
199.5 |
210.1 |
| C4 |
C3 |
N2 |
H2 |
84.4 |
90.0 |
| N2 |
C3 |
C4 |
C5 |
232.1 |
240.0 |
| N2 |
C3 |
C4 |
H3 |
115.1 |
120.0 |
| C5 |
C3 |
C4 |
H3 |
243.0 |
240.0 |
| C4 |
C3 |
C5 |
O5 |
54.0 |
300.0 |
| C4 |
C3 |
C5 |
C6 |
290.2 |
180.0 |
| C4 |
C3 |
C5 |
H5 |
169.6 |
59.9 |
| O4 |
C4 |
C3 |
H4C1 |
125.3 |
240.0 |
| O4 |
C4 |
C3 |
H4C2 |
234.7 |
120.0 |
| C3 |
C4 |
O4 |
H4 |
180.0 |
180.0 |
| H4C1 |
C4 |
C3 |
H4C2 |
109.5 |
239.9 |
| C5 |
C3 |
N2 |
H2 |
314.2 |
330.0 |
| N2 |
C3 |
C5 |
C4 |
128.3 |
120.1 |
| N2 |
C3 |
C5 |
H3 |
245.3 |
240.1 |
| C4 |
C3 |
C5 |
H3 |
117.0 |
120.0 |
| C5 |
C3 |
C4 |
O4 |
180.7 |
60.0 |
| C5 |
C3 |
C4 |
H4C1 |
55.5 |
180.0 |
| C5 |
C3 |
C4 |
H4C2 |
306.0 |
300.0 |
| O5 |
C5 |
C3 |
C6 |
123.8 |
120.0 |
| O5 |
C5 |
C3 |
H5 |
244.4 |
240.1 |
| C3 |
C5 |
O5 |
HA |
180.0 |
300.0 |
| C6 |
C5 |
C3 |
H5 |
120.5 |
120.1 |
| C3 |
C5 |
C6 |
C7 |
46.5 |
270.0 |
| C3 |
C5 |
C6 |
C11 |
220.6 |
89.9 |
| H3 |
C3 |
N2 |
H2 |
199.5 |
210.1 |
| N2 |
C3 |
H3 |
C4 |
241.1 |
239.9 |
| N2 |
C3 |
H3 |
C5 |
117.9 |
119.9 |
| C4 |
C3 |
H3 |
C5 |
236.8 |
240.0 |
| H3 |
C3 |
C4 |
O4 |
297.8 |
180.0 |
| H3 |
C3 |
C4 |
H4C1 |
172.5 |
300.0 |
| H3 |
C3 |
C4 |
H4C2 |
63.0 |
60.0 |
| H3 |
C3 |
C5 |
O5 |
297.0 |
180.0 |
| H3 |
C3 |
C5 |
C6 |
173.2 |
59.9 |
| H3 |
C3 |
C5 |
H5 |
52.6 |
299.9 |
| O4 |
C4 |
C3 |
C5 |
180.7 |
60.0 |
| O4 |
C4 |
C3 |
H3 |
297.8 |
180.0 |
| C3 |
C4 |
O4 |
H4C1 |
234.7 |
120.0 |
| C3 |
C4 |
O4 |
H4C2 |
125.3 |
240.0 |
| H4C1 |
C4 |
O4 |
H4C2 |
250.5 |
120.0 |
| H4C1 |
C4 |
C3 |
C5 |
55.5 |
180.0 |
| H4C1 |
C4 |
C3 |
H3 |
172.5 |
300.0 |
| C3 |
C4 |
H4C1 |
O4 |
122.0 |
240.0 |
| C3 |
C4 |
H4C1 |
H4C2 |
241.0 |
120.1 |
| O4 |
C4 |
H4C1 |
H4C2 |
119.0 |
240.0 |
| H4C1 |
C4 |
O4 |
H4 |
305.2 |
60.0 |
| H4C2 |
C4 |
C3 |
C5 |
306.0 |
300.0 |
| H4C2 |
C4 |
C3 |
H3 |
63.0 |
60.0 |
| C3 |
C4 |
H4C2 |
O4 |
238.0 |
120.0 |
| C3 |
C4 |
H4C2 |
H4C1 |
119.0 |
240.0 |
| O4 |
C4 |
H4C2 |
H4C1 |
241.0 |
120.0 |
| H4C2 |
C4 |
O4 |
H4 |
54.7 |
300.0 |
| H4 |
O4 |
C4 |
H4C1 |
305.2 |
60.0 |
| H4 |
O4 |
C4 |
H4C2 |
54.7 |
300.0 |
| O5 |
C5 |
C3 |
H3 |
297.0 |
180.0 |
| C3 |
C5 |
O5 |
C6 |
231.6 |
240.0 |
| C3 |
C5 |
O5 |
H5 |
115.6 |
119.9 |
| C6 |
C5 |
O5 |
H5 |
244.0 |
240.0 |
| O5 |
C5 |
C6 |
C7 |
283.0 |
150.0 |
| O5 |
C5 |
C6 |
C11 |
97.1 |
330.0 |
| C6 |
C5 |
C3 |
H3 |
173.2 |
59.9 |
| C3 |
C5 |
C6 |
O5 |
123.5 |
120.0 |
| C3 |
C5 |
C6 |
H5 |
239.5 |
240.0 |
| O5 |
C5 |
C6 |
H5 |
116.0 |
120.0 |
| C6 |
C5 |
O5 |
HA |
308.4 |
60.0 |
| C7 |
C6 |
C5 |
C11 |
185.9 |
180.1 |
| C5 |
C6 |
C7 |
C8 |
174.5 |
180.0 |
| C5 |
C6 |
C7 |
H7 |
49.2 |
360.0 |
| C5 |
C6 |
C11 |
C10 |
185.8 |
179.8 |
| C5 |
C6 |
C11 |
H11 |
5.8 |
0.0 |
| H5 |
C5 |
C3 |
H3 |
52.6 |
299.9 |
| C3 |
C5 |
H5 |
O5 |
243.6 |
240.1 |
| C3 |
C5 |
H5 |
C6 |
126.5 |
120.1 |
| O5 |
C5 |
H5 |
C6 |
242.8 |
240.0 |
| H5 |
C5 |
O5 |
HA |
64.4 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
167.0 |
30.0 |
| H5 |
C5 |
C6 |
C11 |
341.1 |
210.0 |
| HA |
O5 |
C5 |
C6 |
308.4 |
60.0 |
| HA |
O5 |
C5 |
H5 |
64.4 |
180.0 |
| C7 |
C6 |
C5 |
H5 |
167.0 |
30.0 |
| C5 |
C6 |
C7 |
C11 |
174.4 |
179.9 |
| C7 |
C6 |
C11 |
C10 |
0.0 |
359.7 |
| C7 |
C6 |
C11 |
H11 |
180.1 |
180.0 |
| C8 |
C7 |
C6 |
H7 |
125.3 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
359.8 |
0.0 |
| C6 |
C7 |
C8 |
H8 |
179.8 |
180.0 |
| C11 |
C6 |
C5 |
H5 |
341.1 |
210.0 |
| C5 |
C6 |
C11 |
C7 |
185.7 |
180.1 |
| C11 |
C6 |
C7 |
C8 |
0.1 |
0.0 |
| C11 |
C6 |
C7 |
H7 |
234.8 |
180.1 |
| C9 |
C10 |
C11 |
C6 |
359.9 |
0.5 |
| C6 |
C11 |
C10 |
H10 |
234.6 |
180.1 |
| C10 |
C11 |
C6 |
H11 |
180.0 |
179.7 |
| C8 |
C7 |
C6 |
C11 |
0.1 |
0.0 |
| C6 |
C7 |
C8 |
H7 |
234.8 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
N9 |
180.3 |
180.0 |
| C7 |
C8 |
C9 |
C10 |
0.1 |
0.2 |
| H7 |
C7 |
C6 |
C11 |
234.8 |
180.1 |
| C6 |
C7 |
H7 |
C8 |
132.2 |
180.0 |
| H7 |
C7 |
C8 |
C9 |
125.1 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
305.1 |
359.9 |
| C9 |
C8 |
C7 |
H7 |
125.1 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| N9 |
C9 |
C8 |
C10 |
180.1 |
179.7 |
| C8 |
C9 |
N9 |
H9N1 |
180.0 |
180.0 |
| C8 |
C9 |
N9 |
H9N2 |
54.7 |
359.7 |
| C8 |
C9 |
C10 |
C11 |
0.0 |
359.5 |
| C8 |
C9 |
C10 |
H10 |
125.3 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
305.1 |
359.9 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
C9 |
N9 |
0.3 |
0.0 |
| H8 |
C8 |
C9 |
C10 |
180.1 |
180.3 |
| N9 |
C9 |
C8 |
H8 |
0.3 |
0.0 |
| C8 |
C9 |
N9 |
C10 |
179.9 |
180.3 |
| N9 |
C9 |
C10 |
C11 |
179.9 |
179.8 |
| N9 |
C9 |
C10 |
H10 |
305.2 |
0.2 |
| H9N1 |
N9 |
C9 |
H9N2 |
125.3 |
180.3 |
| C6 |
C11 |
C10 |
C9 |
359.9 |
0.5 |
| C10 |
C9 |
C8 |
H8 |
180.1 |
180.3 |
| C8 |
C9 |
C10 |
N9 |
180.1 |
179.7 |
| C10 |
C9 |
N9 |
H9N1 |
0.1 |
359.8 |
| C10 |
C9 |
N9 |
H9N2 |
234.9 |
179.4 |
| C11 |
C10 |
C9 |
H10 |
234.7 |
179.5 |
| C9 |
C10 |
C11 |
H11 |
179.9 |
180.3 |
| H9N1 |
N9 |
C9 |
C10 |
0.1 |
359.8 |
| C9 |
N9 |
H9N1 |
H9N2 |
234.8 |
179.7 |
| H9N2 |
N9 |
C9 |
C10 |
234.9 |
179.4 |
| C9 |
N9 |
H9N2 |
H9N1 |
135.4 |
180.3 |
| C6 |
C11 |
C10 |
H11 |
180.0 |
180.3 |
| C9 |
C10 |
C11 |
H10 |
125.3 |
180.5 |
| C9 |
C10 |
H10 |
C11 |
229.2 |
179.5 |
| H10 |
C10 |
C11 |
H11 |
54.6 |
359.8 |
| C6 |
C11 |
H11 |
C10 |
180.0 |
179.7 |
| H11 |
C11 |
C10 |
H10 |
54.6 |
359.8 |