PDB Chemical Component CLH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CLH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.491 |
1.441 |
N |
H |
1.000 |
1.007 |
N |
H2 |
1.000 |
1.007 |
CA |
CB |
1.529 |
1.530 |
CA |
C |
1.531 |
1.516 |
CA |
HA |
1.100 |
1.094 |
CB |
CG |
1.529 |
1.534 |
CB |
HB2 |
1.100 |
1.098 |
CB |
HB3 |
1.100 |
1.098 |
CG |
CD |
1.530 |
1.533 |
CG |
HG2 |
1.100 |
1.097 |
CG |
HG3 |
1.100 |
1.096 |
CD |
CE |
1.530 |
1.530 |
CD |
HD2 |
1.100 |
1.095 |
CD |
HD3 |
1.100 |
1.097 |
CE |
NZ |
1.489 |
1.458 |
CE |
HE2 |
1.100 |
1.095 |
CE |
HE3 |
1.100 |
1.096 |
NZ |
CH |
1.304 |
1.382 |
NZ |
HZ |
1.000 |
1.010 |
CH |
OI |
1.215 |
1.228 |
CH |
CI |
1.530 |
1.507 |
CI |
NJ |
1.490 |
1.471 |
CI |
HI1 |
1.100 |
1.094 |
CI |
HI2 |
1.100 |
1.094 |
NJ |
CK |
1.304 |
1.362 |
NJ |
HNJ |
1.000 |
1.004 |
CK |
OL |
1.215 |
1.220 |
CK |
CL |
1.380 |
1.498 |
C |
O |
1.214 |
1.224 |
C |
OXT |
|
1.359 |
CL |
OM |
|
1.219 |
CL |
HL |
1.080 |
1.101 |
OXT |
HXT |
|
0.982 |
Bond Angles for CLH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
109.5 |
119.1 |
CA |
N |
H2 |
109.5 |
119.0 |
N |
CA |
CB |
105.1 |
112.5 |
N |
CA |
C |
110.2 |
106.4 |
N |
CA |
HA |
112.3 |
106.2 |
H |
N |
H2 |
109.4 |
120.5 |
CB |
CA |
C |
110.5 |
110.2 |
CB |
CA |
HA |
111.9 |
112.3 |
CA |
CB |
CG |
109.5 |
114.6 |
CA |
CB |
HB2 |
109.5 |
109.4 |
CA |
CB |
HB3 |
109.5 |
109.5 |
C |
CA |
HA |
107.0 |
109.0 |
CA |
C |
O |
121.1 |
125.3 |
CA |
C |
OXT |
|
111.9 |
CG |
CB |
HB2 |
109.4 |
108.1 |
CG |
CB |
HB3 |
109.4 |
109.0 |
CB |
CG |
CD |
109.5 |
113.2 |
CB |
CG |
HG2 |
109.4 |
107.9 |
CB |
CG |
HG3 |
109.4 |
109.6 |
HB2 |
CB |
HB3 |
109.5 |
105.9 |
CD |
CG |
HG2 |
109.5 |
109.0 |
CD |
CG |
HG3 |
109.5 |
110.3 |
CG |
CD |
CE |
109.5 |
113.0 |
CG |
CD |
HD2 |
109.4 |
110.2 |
CG |
CD |
HD3 |
109.4 |
109.2 |
HG2 |
CG |
HG3 |
109.5 |
106.5 |
CE |
CD |
HD2 |
109.4 |
109.2 |
CE |
CD |
HD3 |
109.5 |
108.3 |
CD |
CE |
NZ |
105.0 |
112.0 |
CD |
CE |
HE2 |
112.0 |
110.0 |
CD |
CE |
HE3 |
111.0 |
109.1 |
HD2 |
CD |
HD3 |
109.5 |
106.8 |
NZ |
CE |
HE2 |
112.0 |
109.2 |
NZ |
CE |
HE3 |
111.0 |
109.0 |
CE |
NZ |
CH |
120.0 |
122.8 |
CE |
NZ |
HZ |
120.0 |
118.6 |
HE2 |
CE |
HE3 |
106.0 |
107.4 |
CH |
NZ |
HZ |
120.0 |
118.6 |
NZ |
CH |
OI |
121.2 |
125.7 |
NZ |
CH |
CI |
117.5 |
110.9 |
OI |
CH |
CI |
121.2 |
123.4 |
CH |
CI |
NJ |
109.6 |
109.6 |
CH |
CI |
HI1 |
109.4 |
109.7 |
CH |
CI |
HI2 |
109.5 |
109.8 |
NJ |
CI |
HI1 |
109.4 |
109.2 |
NJ |
CI |
HI2 |
109.4 |
109.2 |
CI |
NJ |
CK |
120.0 |
122.0 |
CI |
NJ |
HNJ |
120.0 |
119.0 |
HI1 |
CI |
HI2 |
109.6 |
109.3 |
CK |
NJ |
HNJ |
120.0 |
119.0 |
NJ |
CK |
OL |
124.7 |
130.1 |
NJ |
CK |
CL |
112.0 |
111.5 |
OL |
CK |
CL |
123.3 |
118.3 |
CK |
CL |
OM |
|
119.5 |
CK |
CL |
HL |
126.0 |
115.6 |
O |
C |
OXT |
|
122.8 |
C |
OXT |
HXT |
|
115.3 |
OM |
CL |
HL |
|
124.9 |
Torsion Angles for CLH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
120.0 |
166.5 |
CB |
CA |
N |
C |
240.9 |
239.3 |
CB |
CA |
N |
HA |
121.8 |
123.2 |
N |
CA |
CB |
CG |
249.4 |
297.0 |
N |
CA |
CB |
HB2 |
129.4 |
58.6 |
N |
CA |
CB |
HB3 |
9.4 |
174.2 |
C |
CA |
N |
HA |
240.9 |
244.0 |
N |
CA |
C |
O |
253.3 |
324.2 |
N |
CA |
C |
OXT |
|
146.6 |
CA |
N |
H |
H2 |
240.0 |
193.7 |
H |
N |
CA |
CB |
21.2 |
167.1 |
H |
N |
CA |
C |
140.3 |
287.8 |
H |
N |
CA |
HA |
259.4 |
43.9 |
CA |
N |
H2 |
H |
120.0 |
166.3 |
H2 |
N |
CA |
CB |
261.3 |
0.6 |
H2 |
N |
CA |
C |
20.4 |
121.3 |
H2 |
N |
CA |
HA |
139.5 |
237.4 |
CB |
CA |
N |
H |
21.2 |
167.1 |
CB |
CA |
N |
H2 |
261.3 |
0.6 |
N |
CA |
CB |
C |
118.8 |
118.6 |
N |
CA |
CB |
HA |
237.9 |
240.2 |
C |
CA |
CB |
HA |
119.1 |
121.7 |
CB |
CA |
C |
O |
9.0 |
86.4 |
CB |
CA |
C |
OXT |
|
268.8 |
CG |
CB |
CA |
HB2 |
120.0 |
238.5 |
CG |
CB |
CA |
HB3 |
240.0 |
122.8 |
CA |
CB |
CG |
CD |
271.8 |
182.3 |
CA |
CB |
CG |
HG2 |
151.8 |
61.6 |
CA |
CB |
CG |
HG3 |
31.8 |
305.9 |
HB2 |
CB |
CA |
HB3 |
120.1 |
244.3 |
C |
CA |
N |
H |
140.3 |
287.8 |
C |
CA |
N |
H2 |
20.4 |
121.3 |
N |
CA |
C |
CB |
244.3 |
237.8 |
N |
CA |
C |
HA |
122.3 |
114.2 |
CB |
CA |
C |
HA |
238.0 |
236.4 |
C |
CA |
CB |
CG |
130.6 |
178.5 |
C |
CA |
CB |
HB2 |
10.6 |
300.0 |
C |
CA |
CB |
HB3 |
250.5 |
55.7 |
O |
C |
CA |
OXT |
|
177.6 |
CA |
C |
OXT |
HXT |
|
177.7 |
HA |
CA |
N |
H |
259.4 |
43.9 |
HA |
CA |
N |
H2 |
139.5 |
237.4 |
N |
CA |
HA |
CB |
117.9 |
123.3 |
N |
CA |
HA |
C |
239.0 |
245.7 |
CB |
CA |
HA |
C |
121.2 |
122.3 |
HA |
CA |
CB |
CG |
11.5 |
56.8 |
HA |
CA |
CB |
HB2 |
251.5 |
178.4 |
HA |
CA |
CB |
HB3 |
131.5 |
294.0 |
HA |
CA |
C |
O |
131.0 |
210.0 |
HA |
CA |
C |
OXT |
|
32.4 |
CG |
CB |
CA |
C |
130.6 |
178.5 |
CG |
CB |
CA |
HA |
11.5 |
56.8 |
CA |
CB |
CG |
HB2 |
240.0 |
122.2 |
CA |
CB |
CG |
HB3 |
120.0 |
236.9 |
HB2 |
CB |
CG |
HB3 |
240.0 |
114.7 |
CD |
CG |
CB |
HG2 |
120.0 |
120.7 |
CD |
CG |
CB |
HG3 |
240.0 |
236.4 |
CB |
CG |
CD |
CE |
133.3 |
182.5 |
CB |
CG |
CD |
HD2 |
13.3 |
60.0 |
CB |
CG |
CD |
HD3 |
253.3 |
303.0 |
HG2 |
CG |
CB |
HG3 |
120.0 |
115.7 |
HB2 |
CB |
CA |
C |
10.6 |
300.0 |
HB2 |
CB |
CA |
HA |
251.5 |
178.4 |
CA |
CB |
HB2 |
CG |
120.0 |
234.6 |
CA |
CB |
HB2 |
HB3 |
240.0 |
117.9 |
CG |
CB |
HB2 |
HB3 |
119.9 |
243.3 |
HB2 |
CB |
CG |
CD |
31.8 |
60.1 |
HB2 |
CB |
CG |
HG2 |
271.8 |
299.4 |
HB2 |
CB |
CG |
HG3 |
151.8 |
183.7 |
HB3 |
CB |
CA |
C |
250.5 |
55.7 |
HB3 |
CB |
CA |
HA |
131.5 |
294.0 |
CA |
CB |
HB3 |
CG |
240.0 |
126.1 |
CA |
CB |
HB3 |
HB2 |
120.0 |
242.2 |
CG |
CB |
HB3 |
HB2 |
240.1 |
116.1 |
HB3 |
CB |
CG |
CD |
151.8 |
305.4 |
HB3 |
CB |
CG |
HG2 |
31.8 |
184.7 |
HB3 |
CB |
CG |
HG3 |
271.8 |
69.0 |
CD |
CG |
CB |
HB2 |
31.8 |
60.1 |
CD |
CG |
CB |
HB3 |
151.8 |
305.4 |
CB |
CG |
CD |
HG2 |
240.0 |
239.9 |
CB |
CG |
CD |
HG3 |
120.0 |
123.3 |
HG2 |
CG |
CD |
HG3 |
240.0 |
243.4 |
CE |
CD |
CG |
HD2 |
120.0 |
122.5 |
CE |
CD |
CG |
HD3 |
240.0 |
239.4 |
CG |
CD |
CE |
NZ |
280.3 |
298.3 |
CG |
CD |
CE |
HE2 |
158.6 |
59.9 |
CG |
CD |
CE |
HE3 |
40.3 |
177.6 |
HD2 |
CD |
CG |
HD3 |
120.0 |
117.0 |
HG2 |
CG |
CB |
HB2 |
271.8 |
299.4 |
HG2 |
CG |
CB |
HB3 |
31.8 |
184.7 |
CB |
CG |
HG2 |
CD |
120.0 |
123.3 |
CB |
CG |
HG2 |
HG3 |
240.0 |
242.3 |
CD |
CG |
HG2 |
HG3 |
120.0 |
119.0 |
HG2 |
CG |
CD |
CE |
253.3 |
302.6 |
HG2 |
CG |
CD |
HD2 |
133.3 |
180.1 |
HG2 |
CG |
CD |
HD3 |
13.3 |
63.1 |
HG3 |
CG |
CB |
HB2 |
151.8 |
183.7 |
HG3 |
CG |
CB |
HB3 |
271.8 |
69.0 |
CB |
CG |
HG3 |
CD |
240.0 |
234.7 |
CB |
CG |
HG3 |
HG2 |
120.0 |
116.5 |
CD |
CG |
HG3 |
HG2 |
240.0 |
241.9 |
HG3 |
CG |
CD |
CE |
13.3 |
59.2 |
HG3 |
CG |
CD |
HD2 |
253.3 |
296.7 |
HG3 |
CG |
CD |
HD3 |
133.3 |
179.7 |
CE |
CD |
CG |
HG2 |
253.3 |
302.6 |
CE |
CD |
CG |
HG3 |
13.3 |
59.2 |
CG |
CD |
CE |
HD2 |
240.0 |
237.0 |
CG |
CD |
CE |
HD3 |
120.0 |
121.0 |
HD2 |
CD |
CE |
HD3 |
239.9 |
244.0 |
NZ |
CE |
CD |
HE2 |
121.7 |
238.4 |
NZ |
CE |
CD |
HE3 |
240.0 |
120.8 |
CD |
CE |
NZ |
CH |
266.5 |
270.1 |
CD |
CE |
NZ |
HZ |
86.5 |
90.0 |
HE2 |
CE |
CD |
HE3 |
118.3 |
242.4 |
HD2 |
CD |
CG |
HG2 |
133.3 |
180.1 |
HD2 |
CD |
CG |
HG3 |
253.3 |
296.7 |
CG |
CD |
HD2 |
CE |
120.0 |
124.6 |
CG |
CD |
HD2 |
HD3 |
240.0 |
241.6 |
CE |
CD |
HD2 |
HD3 |
120.0 |
116.9 |
HD2 |
CD |
CE |
NZ |
40.3 |
61.3 |
HD2 |
CD |
CE |
HE2 |
278.5 |
182.9 |
HD2 |
CD |
CE |
HE3 |
160.3 |
300.6 |
HD3 |
CD |
CG |
HG2 |
13.3 |
63.1 |
HD3 |
CD |
CG |
HG3 |
133.3 |
179.7 |
CG |
CD |
HD3 |
CE |
240.0 |
236.6 |
CG |
CD |
HD3 |
HD2 |
120.0 |
119.1 |
CE |
CD |
HD3 |
HD2 |
240.0 |
242.5 |
HD3 |
CD |
CE |
NZ |
160.3 |
177.3 |
HD3 |
CD |
CE |
HE2 |
38.6 |
298.9 |
HD3 |
CD |
CE |
HE3 |
280.3 |
56.5 |
NZ |
CE |
CD |
HD2 |
40.3 |
61.3 |
NZ |
CE |
CD |
HD3 |
160.3 |
177.3 |
CD |
CE |
NZ |
HE2 |
238.3 |
122.1 |
CD |
CE |
NZ |
HE3 |
120.0 |
239.2 |
HE2 |
CE |
NZ |
HE3 |
241.7 |
117.1 |
CH |
NZ |
CE |
HZ |
180.0 |
180.1 |
CE |
NZ |
CH |
OI |
360.0 |
359.9 |
CE |
NZ |
CH |
CI |
180.0 |
179.8 |
HE2 |
CE |
CD |
HD2 |
278.5 |
182.9 |
HE2 |
CE |
CD |
HD3 |
38.6 |
298.9 |
CD |
CE |
HE2 |
NZ |
117.6 |
236.8 |
CD |
CE |
HE2 |
HE3 |
238.8 |
118.7 |
NZ |
CE |
HE2 |
HE3 |
121.2 |
241.9 |
HE2 |
CE |
NZ |
CH |
28.2 |
148.0 |
HE2 |
CE |
NZ |
HZ |
208.2 |
327.9 |
HE3 |
CE |
CD |
HD2 |
160.3 |
300.6 |
HE3 |
CE |
CD |
HD3 |
280.3 |
56.5 |
CD |
CE |
HE3 |
NZ |
243.7 |
122.5 |
CD |
CE |
HE3 |
HE2 |
121.8 |
240.7 |
NZ |
CE |
HE3 |
HE2 |
238.2 |
118.2 |
HE3 |
CE |
NZ |
CH |
146.5 |
30.9 |
HE3 |
CE |
NZ |
HZ |
326.5 |
210.8 |
CH |
NZ |
CE |
HE2 |
28.2 |
148.0 |
CH |
NZ |
CE |
HE3 |
146.5 |
30.9 |
CE |
NZ |
CH |
HZ |
180.0 |
179.9 |
OI |
CH |
NZ |
CI |
180.0 |
180.1 |
NZ |
CH |
CI |
NJ |
197.3 |
180.1 |
NZ |
CH |
CI |
HI1 |
77.4 |
300.0 |
NZ |
CH |
CI |
HI2 |
317.3 |
60.2 |
HZ |
NZ |
CE |
HE2 |
208.2 |
327.9 |
HZ |
NZ |
CE |
HE3 |
326.5 |
210.8 |
CE |
NZ |
HZ |
CH |
180.0 |
180.1 |
HZ |
NZ |
CH |
OI |
180.0 |
180.0 |
HZ |
NZ |
CH |
CI |
360.0 |
359.9 |
OI |
CH |
NZ |
HZ |
180.0 |
180.0 |
NZ |
CH |
OI |
CI |
180.0 |
179.9 |
OI |
CH |
CI |
NJ |
17.3 |
0.0 |
OI |
CH |
CI |
HI1 |
257.4 |
119.9 |
OI |
CH |
CI |
HI2 |
137.3 |
240.1 |
CI |
CH |
NZ |
HZ |
360.0 |
359.9 |
NZ |
CH |
CI |
OI |
180.0 |
180.1 |
NJ |
CI |
CH |
HI1 |
120.0 |
240.1 |
NJ |
CI |
CH |
HI2 |
240.0 |
120.0 |
CH |
CI |
NJ |
CK |
187.0 |
90.0 |
CH |
CI |
NJ |
HNJ |
7.0 |
270.0 |
HI1 |
CI |
CH |
HI2 |
120.1 |
239.8 |
CH |
CI |
NJ |
HI1 |
240.0 |
120.2 |
CH |
CI |
NJ |
HI2 |
120.0 |
239.6 |
HI1 |
CI |
NJ |
HI2 |
240.0 |
119.5 |
CK |
NJ |
CI |
HNJ |
180.0 |
180.0 |
CI |
NJ |
CK |
OL |
0.1 |
0.1 |
CI |
NJ |
CK |
CL |
180.0 |
180.2 |
CH |
CI |
HI1 |
NJ |
120.0 |
239.9 |
CH |
CI |
HI1 |
HI2 |
240.0 |
120.5 |
NJ |
CI |
HI1 |
HI2 |
120.0 |
240.6 |
HI1 |
CI |
NJ |
CK |
306.9 |
329.8 |
HI1 |
CI |
NJ |
HNJ |
126.9 |
149.8 |
CH |
CI |
HI2 |
NJ |
239.9 |
120.2 |
CH |
CI |
HI2 |
HI1 |
120.0 |
239.6 |
NJ |
CI |
HI2 |
HI1 |
240.0 |
119.4 |
HI2 |
CI |
NJ |
CK |
66.9 |
210.3 |
HI2 |
CI |
NJ |
HNJ |
247.0 |
30.4 |
CK |
NJ |
CI |
HI1 |
306.9 |
329.8 |
CK |
NJ |
CI |
HI2 |
66.9 |
210.3 |
CI |
NJ |
CK |
HNJ |
180.0 |
180.0 |
OL |
CK |
NJ |
CL |
180.0 |
179.8 |
NJ |
CK |
CL |
OM |
|
119.8 |
NJ |
CK |
CL |
HL |
276.3 |
301.0 |
HNJ |
NJ |
CI |
HI1 |
126.9 |
149.8 |
HNJ |
NJ |
CI |
HI2 |
247.0 |
30.4 |
CI |
NJ |
HNJ |
CK |
180.0 |
180.0 |
HNJ |
NJ |
CK |
OL |
180.0 |
180.0 |
HNJ |
NJ |
CK |
CL |
0.0 |
0.2 |
OL |
CK |
NJ |
HNJ |
180.0 |
180.0 |
NJ |
CK |
OL |
CL |
180.0 |
180.2 |
OL |
CK |
CL |
OM |
|
300.0 |
OL |
CK |
CL |
HL |
96.3 |
121.1 |
CL |
CK |
NJ |
HNJ |
0.0 |
0.2 |
NJ |
CK |
CL |
OL |
180.0 |
179.8 |
OM |
CL |
CK |
HL |
|
178.8 |
O |
C |
CA |
HA |
131.0 |
210.0 |
CA |
C |
O |
OXT |
|
182.7 |
O |
C |
OXT |
HXT |
|
0.0 |
OXT |
C |
CA |
HA |
|
32.4 |
CA |
C |
OXT |
O |
|
177.6 |
CK |
CL |
OM |
HL |
|
181.3 |
CK |
CL |
HL |
OM |
|
178.8 |