Atom Nomenclature for CL8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for CL8

Atom Name (V3) Atom Name (V2)
C1 C1
CL1 CL1
CL2 CL2
C2 C2
O2 O2
N2 N2
C3 C3
C4 C4
C5 C5
O5 O5
C6 C6
C7 C7
C8 C8
C9 C9
N9 N9
O9A O9A
O9B O9B
C10 C10
C11 C11
O4 O4
O15 O15
C15 C15
O16 O16
C14 C14
C13 C13
C12 C12
O12 O12
H1 H1
H2 H2
H3 H3
H41C H41C
H42C H42C
H5 H5
HA HA
H7 H7
H11 H11
H8 H8
H10 H10
H16 H16
H141 H141
H142 H142
H131 H131
H132 H132