PDB Chemical Component CKD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CKD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F1	C24	1.360	1.351
C24	C23	1.371	1.385
C24	C25	1.375	1.384
C23	C22	1.386	1.382
C25	C26	1.387	1.382
C22	C21	1.395	1.383
C26	C21	1.389	1.383
F2	C30	1.353	1.351
C31	C30	1.375	1.385
C31	C32	1.384	1.382
C21	C20	1.524	1.506
C30	C29	1.368	1.386
C32	C27	1.394	1.382
C29	C28	1.384	1.382
C27	C28	1.391	1.382
C27	C20	1.522	1.507
C5	C6	1.385	1.382
C5	C4	1.388	1.383
C20	C19	1.541	1.530
C6	C7	1.385	1.382
C4	C3	1.389	1.382
C19	C18	1.516	1.507
C7	C8	1.389	1.382
O1	S	1.429	1.421
C3	C8	1.389	1.381
C3	S	1.763	1.763
S	N1	1.642	1.656
S	O	1.430	1.421
C18	N2	1.340	1.347
C18	O2	1.220	1.213
C1	C2	1.523	1.533
C1	N	1.493	1.469
C2	N1	1.492	1.470
C2	C10	1.529	1.530
N2	C13	1.413	1.399
N1	C9	1.481	1.471
N	C	1.489	1.470
C11	C10	1.531	1.530
C11	C12	1.518	1.506
C	C9	1.511	1.532
C13	C12	1.418	1.388
C13	C14	1.399	1.390
C12	C17	1.383	1.384
C14	C15	1.385	1.381
C17	F	1.354	1.351
C17	C16	1.374	1.384
C15	C16	1.386	1.382
C2	H1	1.100	1.090
C5	H2	1.080	1.080
C7	H3	1.080	1.081
C9	H4	1.100	1.090
C9	H5	1.100	1.090
C10	H6	1.100	1.091
C10	H7	1.099	1.090
C11	H8	1.100	1.090
C11	H9	1.100	1.090
C15	H10	1.080	1.080
C20	H11	1.100	1.090
C22	H12	1.080	1.080
C29	H13	1.080	1.081
C28	H14	1.080	1.080
C31	H15	1.080	1.080
C32	H16	1.080	1.080
C26	H17	1.080	1.081
C25	H18	1.080	1.080
C23	H19	1.080	1.080
C19	H20	1.100	1.090
C19	H21	1.100	1.091
N2	H22	1.000	0.970
C14	H23	1.080	1.080
C16	H24	1.081	1.081
C1	H25	1.100	1.090
C1	H26	1.100	1.090
N	H27	1.000	1.009
C	H29	1.100	1.090
C	H30	1.101	1.090
C8	H31	1.080	1.081
C6	H32	1.080	1.080
C4	H33	1.080	1.080

Bond Angles for CKD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C24	C23	118.5	120.0
C24	C23	H19	120.9	120.0
C24	C25	H18	120.9	120.0
C23	C22	H12	119.4	120.0
C25	C26	H17	119.5	120.0
F2	C30	C29	118.5	120.0
C31	C32	C27	121.2	120.0
C32	C31	H15	121.0	120.1
C31	C32	H16	119.5	120.0
C21	C20	C19	114.6	109.5
C21	C20	H11	106.1	109.5
C30	C29	C28	118.2	120.0
C30	C29	H13	120.9	120.0
C27	C32	H16	119.4	120.0
C28	C29	H13	120.9	120.1
C29	C28	H14	119.4	119.9
C27	C28	H14	119.4	120.0
C27	C20	C19	112.4	109.5
C27	C20	H11	106.1	109.5
C6	C5	C4	120.5	120.0
C5	C6	C7	119.9	120.0
C6	C5	H2	119.7	120.0
C5	C6	H32	120.0	120.0
C4	C5	H2	119.8	120.0
C5	C4	H33	120.4	120.0
C19	C20	H11	105.9	109.4
C20	C19	H20	109.3	109.5
C20	C19	H21	109.3	109.4
C6	C7	H3	119.8	120.0
C19	C18	N2	115.8	120.0
C19	C18	O2	121.6	120.0
C3	C8	C7	119.1	120.0
C8	C7	H3	119.8	120.0
C7	C8	H31	120.4	120.0
S	C3	C8	119.5	120.0
C3	C8	H31	120.4	120.0
C3	S	N1	107.2	107.2
C3	S	O	107.9	106.4
O2	C18	N2	122.4	120.0
C18	N2	H22	116.1	120.0
C1	C2	N1	111.4	108.5
C1	C2	H1	106.1	109.8
C1	N	C	112.1	111.3
N	C1	H25	109.0	109.5
N	C1	H26	109.0	109.5
C1	N	H27	108.8	111.0
C10	C2	N1	113.8	109.6
C2	N1	C9	116.9	118.2
N1	C2	H1	106.4	109.7
C10	C2	H1	106.0	109.6
C2	C10	H6	108.5	109.4
C2	C10	H7	108.5	109.5
N2	C13	C14	123.5	120.0
N1	C9	H4	109.5	109.7
N1	C9	H5	109.5	109.6
C	N	H27	108.8	111.0
N	C	H29	109.3	109.5
N	C	H30	109.3	109.5
C11	C10	H6	108.5	109.5
C11	C10	H7	108.5	109.5
C11	C12	C17	121.8	120.0
C12	C11	H8	108.7	109.5
C12	C11	H9	108.6	109.5
C	C9	H4	109.4	109.6
C	C9	H5	109.5	109.8
C13	C12	C17	116.0	119.9
C13	C14	C15	119.7	120.0
C13	C14	H23	120.1	120.0
C12	C17	F	117.4	120.0
C12	C17	C16	124.2	120.0
C14	C15	C16	120.4	120.1
C14	C15	H10	119.8	119.9
C17	C16	H24	120.7	119.9
C16	C15	H10	119.8	120.0
C15	C16	H24	120.7	119.9
H4	C9	H5	109.5	109.6
H6	C10	H7	109.4	109.4
H8	C11	H9	109.5	109.5
H20	C19	H21	109.4	109.4
H25	C1	H26	109.5	109.5
H29	C	H30	109.5	109.5

Torsion Angles for CKD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
F1	C24	C23	H19	357.5	0.1
F1	C24	C25	H18	3.0	0.2
C23	C24	C25	H18	181.7	180.3
C24	C23	C22	H12	179.3	180.0
C24	C25	C26	H17	179.7	180.1
C22	C21	C20	C19	312.4	243.2
C22	C21	C20	H11	195.9	3.2
C26	C21	C20	C19	138.2	63.0
C26	C21	C20	H11	21.7	183.0
F2	C30	C29	C28	179.5	180.0
F2	C30	C29	H13	359.5	0.0
C31	C30	C29	H13	179.2	180.2
C27	C32	C31	H16	180.0	180.1
C27	C20	C21	C19	128.6	240.0
C27	C20	C21	H11	245.1	120.0
C19	C20	C21	H11	116.5	240.1
C21	C20	C19	H20	328.9	54.9
C21	C20	C19	H21	88.6	295.0
C28	C29	C30	H13	180.0	180.0
C30	C29	C28	H14	179.8	180.0
C27	C32	C31	H15	180.8	180.0
C31	C32	C27	H16	180.0	179.9
C32	C27	C28	H14	181.3	179.8
C32	C27	C20	C19	58.4	135.3
C32	C27	C20	H11	173.8	15.3
C30	C29	C28	H13	180.0	180.0
C27	C28	C29	H14	180.0	180.0
C27	C28	C29	H13	179.9	180.0
C29	C28	C27	H14	180.0	180.0
C28	C27	C20	C19	234.1	315.0
C28	C27	C20	H11	349.4	195.0
C21	C20	C27	C19	230.2	120.0
C21	C20	C27	H11	114.9	240.0
C19	C20	C27	H11	244.7	120.0
C27	C20	C19	H20	201.0	175.0
C27	C20	C19	H21	320.7	55.0
C4	C5	C6	H2	180.0	179.7
C6	C5	C4	H33	180.2	180.0
C5	C6	C7	H3	180.0	180.0
C4	C5	C6	C7	359.9	359.7
C6	C5	C4	H2	180.0	180.3
C4	C5	C6	H32	179.9	179.9
C21	C20	C19	H11	243.4	120.0
C27	C20	C19	H11	115.5	240.0
C20	C19	C18	N2	255.7	180.0
C20	C19	C18	O2	70.5	359.9
H20	C19	C20	H21	240.3	119.9
C7	C6	C5	C4	359.9	359.7
C7	C6	C5	H2	179.9	180.0
C5	C6	C7	H32	180.0	180.2
C8	C7	C6	H3	180.0	180.5
C6	C7	C8	H31	180.1	179.5
C4	C3	C8	H31	180.0	180.3
O2	C18	C19	N2	174.8	180.0
C19	C18	N2	H22	26.7	6.3
C5	C6	C7	C8	360.0	0.5
C6	C7	C8	H3	180.0	179.5
S	C3	C8	C7	180.2	180.0
C3	C8	C7	H31	180.0	180.0
O1	S	C3	C8	222.1	328.7
C3	C8	C7	H3	180.1	180.0
C7	C8	C3	H31	180.0	180.0
C8	C3	S	N1	107.3	82.2
C8	C3	S	O	353.1	195.7
S	C3	C8	H31	0.2	0.0
N1	S	C3	C8	107.3	82.2
C3	S	N1	O	244.7	113.5
S	N1	C2	H1	6.9	248.7
S	N1	C9	H4	225.2	350.9
S	N1	C9	H5	345.2	111.3
O	S	C3	C8	353.1	195.7
C3	S	O	N1	114.8	245.9
C19	C18	N2	O2	174.8	180.0
C18	N2	C13	C14	29.7	22.8
C19	C18	O2	N2	185.5	180.0
O2	C18	N2	H22	211.9	186.3
C10	C2	C1	N1	129.1	119.7
C1	C2	N1	C9	47.5	308.8
N1	C2	C1	H1	115.4	119.9
C10	C2	C1	H1	244.5	239.6
C1	C2	C10	H6	280.6	187.6
C1	C2	C10	H7	39.4	307.6
N	C1	C2	N1	312.3	53.9
N	C1	C2	H1	196.9	294.0
C	N	C1	H27	239.6	235.9
C1	N	C	H29	59.3	303.1
C1	N	C	H30	179.2	183.1
H25	C1	N	H26	119.5	120.1
C3	S	N1	C2	93.6	78.2
C1	C2	N1	H1	244.8	240.0
C10	C2	N1	H1	116.4	120.4
N1	C2	C10	H6	48.4	306.6
N1	C2	C10	H7	167.3	66.6
C2	N1	C9	H4	68.5	170.9
C2	N1	C9	H5	188.5	291.3
C1	C2	C10	N1	232.2	241.0
C1	C2	C10	H1	115.5	120.6
C10	C2	N1	C9	279.1	189.1
N1	C2	C10	H1	243.3	239.6
C11	C10	C2	H6	239.4	240.0
C11	C10	C2	H7	120.6	120.1
H6	C10	C2	H7	241.2	240.0
N2	C13	C12	C17	165.3	180.3
N2	C13	C14	C15	195.7	179.9
N2	C13	C14	H23	15.7	359.9
C3	S	N1	C9	298.0	258.2
C9	N1	C2	H1	162.7	68.7
C	C9	N1	H4	240.0	240.3
C	C9	N1	H5	120.0	119.9
H4	C9	N1	H5	240.0	239.6
C	N	C1	H25	296.0	177.0
C	N	C1	H26	176.5	56.8
C1	N	C	H27	120.4	124.1
N	C	C9	H4	296.1	186.4
N	C	C9	H5	176.1	66.0
H29	C	N	H30	240.2	120.0
C11	C10	C2	N1	287.8	186.7
C11	C10	C2	H1	44.5	307.1
C2	C10	C11	H6	120.6	120.0
C2	C10	C11	H7	239.4	239.9
H6	C10	C11	H7	118.8	120.0
C12	C11	C10	H6	54.3	63.3
C12	C11	C10	H7	295.5	303.3
C13	C12	C11	C17	176.1	180.3
C11	C12	C17	F	358.8	360.0
C11	C12	C17	C16	176.8	180.0
H8	C11	C12	H9	119.0	120.0
N1	C9	C	H4	120.0	119.7
N1	C9	C	H5	240.0	240.2
H4	C9	C	H5	120.0	120.4
C11	C12	C13	C17	183.7	179.7
C13	C12	C11	H8	341.3	145.6
C13	C12	C11	H9	222.3	25.6
C13	C12	C17	F	182.5	179.7
C13	C12	C17	C16	0.5	359.7
C14	C13	C12	C17	0.2	0.3
C13	C14	C15	C16	0.6	359.7
C13	C14	C15	H10	180.6	180.0
C17	C12	C11	H8	165.2	325.4
C17	C12	C11	H9	46.2	205.3
C12	C17	C16	H24	179.4	180.0
C13	C14	C15	H23	180.0	180.0
C16	C15	C14	H10	180.0	179.8
C14	C15	C16	H24	180.0	180.2
C12	C17	F	C16	178.1	180.0
F	C17	C16	H24	357.3	0.1
C12	C17	C16	F	182.1	180.0
C17	C16	C15	H10	180.0	180.0
C15	C16	C17	H24	180.0	180.0
C12	C17	C16	C15	359.4	0.0
C14	C15	C16	H10	180.0	180.2
C17	C16	C15	H24	180.0	180.0
C1	C2	H1	N1	118.7	119.2
C10	C2	H1	N1	238.5	239.6
H1	C2	N1	C9	162.7	68.7
H1	C2	C10	H6	165.1	67.1
H1	C2	C10	H7	283.9	187.0
C6	C5	H2	C4	180.0	179.7
H2	C5	C6	C7	179.9	180.0
H2	C5	C6	H32	359.9	0.2
H2	C5	C4	H33	0.3	359.7
H3	C7	C8	H31	0.1	360.0
N1	C9	H4	H5	120.0	120.4
C	C9	H4	H5	240.0	239.4
N1	C9	H5	H4	240.0	239.6
C	C9	H5	H4	119.9	120.4
H6	C10	C2	N1	48.4	306.6
H6	C10	C2	H1	165.1	67.1
C2	C10	H6	H7	118.3	120.0
C11	C10	H6	H7	241.7	240.0
H7	C10	C2	N1	167.3	66.6
H7	C10	C2	H1	283.9	187.0
C2	C10	H7	H6	241.7	240.1
C11	C10	H7	H6	118.2	120.0
H8	C11	C10	H6	174.8	183.3
H8	C11	C10	H7	56.0	63.3
H8	C11	C12	C17	165.2	325.4
C12	C11	H8	H9	241.5	240.0
H9	C11	C10	H6	293.9	303.3
H9	C11	C10	H7	175.0	183.3
H9	C11	C12	C17	46.2	205.3
C12	C11	H9	H8	118.5	120.0
C14	C15	H10	C16	180.0	179.8
H10	C15	C16	H24	0.0	360.0
C21	C20	H11	C19	122.2	240.0
C27	C20	H11	C19	240.3	120.0
H11	C20	C19	H20	85.5	295.0
H11	C20	C19	H21	205.2	175.0
C30	C29	H13	C28	180.0	180.0
H13	C29	C28	H14	359.8	360.0
H14	C28	C29	H13	359.8	360.0
H15	C31	C32	C27	180.8	180.0
H15	C31	C32	H16	0.8	360.0
C31	C32	H16	C27	180.0	180.1
H16	C32	C31	H15	0.8	360.0
H18	C25	C26	H17	359.7	360.0
H19	C23	C22	H12	359.3	359.8
H20	C19	C20	H11	85.5	295.0
C20	C19	H20	H21	119.6	240.0
H20	C19	C18	N2	135.5	300.1
H20	C19	C18	O2	310.4	120.0
H21	C19	C20	H11	205.2	175.0
C20	C19	H21	H20	240.4	120.0
H21	C19	C18	N2	15.9	60.0
H21	C19	C18	O2	190.7	240.0
H22	N2	C13	C14	209.6	202.7
C13	C14	H23	C15	180.0	180.0
H23	C14	C15	C16	180.6	179.8
H23	C14	C15	H10	0.6	0.0
H24	C16	C15	H10	0.0	360.0
H25	C1	C2	N1	72.6	173.8
H25	C1	C2	H1	317.2	53.9
H25	C1	N	C	296.0	177.0
N	C1	H25	H26	240.8	239.9
H25	C1	N	H27	56.4	301.1
H26	C1	C2	N1	192.1	293.9
H26	C1	C2	H1	76.7	174.0
H26	C1	N	C	176.5	56.8
N	C1	H26	H25	119.2	120.1
H26	C1	N	H27	296.9	181.0
C1	N	H27	C	237.6	235.7
H27	N	C1	H25	56.4	301.1
H27	N	C1	H26	296.9	181.0
H27	N	C	H29	298.9	179.0
H27	N	C	H30	58.8	59.0
H29	C	N	H27	298.9	179.0
N	C	H29	H30	119.7	240.0
H29	C	C9	H4	176.0	306.4
H29	C	C9	H5	56.0	186.0
H30	C	N	H27	58.8	59.0
N	C	H30	H29	240.2	120.0
H30	C	C9	H4	56.1	66.5
H30	C	C9	H5	296.2	306.1
C3	C8	H31	C7	180.0	180.0
H31	C8	C7	H3	0.1	360.0
H32	C6	C5	C4	179.9	179.9
C5	C6	H32	C7	180.0	179.8
H32	C6	C5	H2	359.9	0.2
H32	C6	C7	H3	360.0	359.8
H33	C4	C5	H2	0.3	359.7