PDB Chemical Component CKB

Ideal Model

Chemical Description

Name 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione
Synonyms 1-D-glucopyranosyl-thymine
Formula C11 H16 N2 O7
Formal charge 0
Molecular weight 288.254 g/mol
Component type NON-POLYMER

Chemical features

Atom count 36
Chiral atom count 5
Chiral atoms C1' C2' C3' C4' C5'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione
Systematic name (OpenEye OEToolkits) 5-methyl-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
InChI descriptor InChI=1S/C11H16N2O7/c1-4-2-13(11(19)12-9(4)18)10-8(17)7(16)6(15)5(3-14)20-10/h2,5-8,10,14-17H,3H2,1H3,(H,12,18,19)/t5-,6-,7+,8-,10-/m1/s1
InChIKey descriptor RMXUFBPORJBBEZ-HPFNVAMJSA-N

Status Information

Last modified 2011-06-04
Created 2007-11-16
Release status REL
Model PDB code 3BD7
Processing site PDBJ