PDB Chemical Component CKB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CKB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2A	N1	1.442	1.345
C2A	N3	1.368	1.346
C2A	O2A	1.238	1.216
C4A	C5A	1.513	1.416
C4A	N3	1.413	1.348
C4A	O4A	1.242	1.218
C5A	C6A	1.374	1.350
C5A	C7	1.519	1.507
C6A	N1	1.462	1.369
N1	C1	1.495	1.465
C1	C2	1.598	1.531
C1	O5	1.472	1.429
C2	C3	1.559	1.531
C2	O2	1.436	1.429
C3	C4	1.530	1.532
C3	O3	1.440	1.429
C4	C5	1.568	1.531
C4	O4	1.461	1.429
C5	C6	1.551	1.530
C5	O5	1.488	1.429
C6	O6	1.479	1.429
C6A	H6	1.080	1.079
C7	H7	1.100	1.091
C7	H7A	1.100	1.090
C7	H7B	1.100	1.089
N3	HN3	1.000	0.970
C1	H1	1.100	1.089
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.091
C5	H5	1.100	1.090
C6	H61	1.100	1.089
C6	H62	1.100	1.090
O6	HO6	0.950	0.966
O2	HO2	0.950	0.967
O3	HO3	0.950	0.968
O4	HO4	0.950	0.967

Bond Angles for CKB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C2A	N3	116.3	121.0
N1	C2A	O2A	127.0	119.5
C2A	N1	C6A	122.4	120.6
C2A	N1	C1	111.1	119.7
N3	C2A	O2A	116.8	119.5
C2A	N3	C4A	123.2	120.2
C2A	N3	HN3	118.4	119.9
C5A	C4A	N3	121.6	119.4
C5A	C4A	O4A	121.5	120.3
C4A	C5A	C6A	114.8	119.1
C4A	C5A	C7	124.5	120.5
N3	C4A	O4A	116.9	120.3
C4A	N3	HN3	118.4	119.9
C6A	C5A	C7	120.6	120.4
C5A	C6A	N1	121.7	119.7
C5A	C6A	H6	119.1	120.2
C5A	C7	H7	109.5	109.4
C5A	C7	H7A	109.5	109.4
C5A	C7	H7B	109.4	109.5
C6A	N1	C1	126.5	119.7
N1	C6A	H6	119.1	120.1
N1	C1	C2	109.5	109.5
N1	C1	O5	108.3	109.5
N1	C1	H1	112.6	109.5
C2	C1	O5	115.8	109.4
C1	C2	C3	105.8	109.2
C1	C2	O2	112.9	109.5
C2	C1	H1	104.6	109.5
C1	C2	H2	110.8	109.5
C1	O5	C5	109.4	114.1
O5	C1	H1	105.9	109.5
C3	C2	O2	112.6	109.5
C2	C3	C4	110.9	109.1
C2	C3	O3	108.8	109.5
C3	C2	H2	111.1	109.5
C2	C3	H3	109.6	109.6
O2	C2	H2	103.8	109.6
C2	O2	HO2	109.5	113.9
C4	C3	O3	111.0	109.5
C3	C4	C5	109.4	109.2
C3	C4	O4	110.1	109.6
C4	C3	H3	107.2	109.5
C3	C4	H4	109.3	109.5
O3	C3	H3	109.4	109.6
C3	O3	HO3	109.5	114.0
C5	C4	O4	110.1	109.5
C4	C5	C6	113.1	109.5
C4	C5	O5	112.4	109.4
C5	C4	H4	109.3	109.5
C4	C5	H5	103.9	109.5
O4	C4	H4	108.6	109.6
C4	O4	HO4	109.5	114.0
C6	C5	O5	106.5	109.5
C5	C6	O6	108.2	109.5
C6	C5	H5	110.1	109.5
C5	C6	H61	109.9	109.5
C5	C6	H62	110.2	109.5
O5	C5	H5	110.8	109.5
O6	C6	H61	109.9	109.5
O6	C6	H62	110.2	109.4
C6	O6	HO6	109.5	114.0
H7	C7	H7A	109.5	109.4
H7	C7	H7B	109.5	109.5
H7A	C7	H7B	109.5	109.6
H61	C6	H62	108.5	109.5

Torsion Angles for CKB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N3	C2A	N1	O2A	179.9	180.3
N1	C2A	N3	C4A	359.7	360.0
N1	C2A	N3	HN3	179.8	180.0
C5A	C6A	N1	C2A	359.9	360.0
C6A	N1	C2A	C1	180.3	180.0
C2A	N1	C6A	H6	179.9	180.0
C2A	N1	C1	C2	137.3	295.0
C2A	N1	C1	O5	264.5	54.9
C2A	N1	C1	H1	21.2	174.9
N1	C2A	N3	O2A	180.1	179.7
N3	C2A	N1	C6A	0.3	0.0
N3	C2A	N1	C1	180.0	180.0
C5A	C4A	N3	C2A	0.1	0.0
C2A	N3	C4A	O4A	180.3	180.0
C4A	N3	C2A	HN3	180.0	180.0
N1	C2A	O2A	N3	179.9	180.3
O2A	C2A	N1	C6A	180.4	179.7
O2A	C2A	N1	C1	0.1	359.7
O2A	C2A	N3	C4A	179.7	180.3
O2A	C2A	N3	HN3	359.7	0.3
C2A	N3	C4A	C5A	0.1	0.0
N3	C4A	C5A	O4A	180.3	179.9
C5A	C4A	N3	HN3	180.1	180.0
C6A	C5A	C4A	C7	179.7	179.9
C4A	C5A	C6A	N1	360.0	0.1
C4A	C5A	C6A	H6	180.0	180.0
C4A	C5A	C7	H7	127.1	0.0
C4A	C5A	C7	H7A	247.1	119.9
C4A	C5A	C7	H7B	7.1	240.0
C4A	N3	C2A	O2A	179.7	180.3
C2A	N3	C4A	HN3	180.0	180.0
C5A	C4A	N3	O4A	179.8	180.1
N3	C4A	C5A	C6A	0.1	359.9
N3	C4A	C5A	C7	180.3	180.0
C5A	C4A	O4A	N3	180.2	179.9
O4A	C4A	C5A	C6A	179.8	180.0
O4A	C4A	C5A	C7	0.1	0.0
O4A	C4A	N3	HN3	0.3	360.0
C2A	N1	C6A	C5A	359.9	360.0
C6A	C5A	C4A	N3	0.1	359.9
C6A	C5A	C4A	O4A	179.8	180.0
C4A	C5A	C6A	C7	180.2	180.1
C6A	C5A	C7	H7	307.4	180.1
C6A	C5A	C7	H7A	67.4	300.0
C6A	C5A	C7	H7B	187.4	60.1
C5A	C6A	N1	C1	180.2	179.9
N1	C6A	C5A	H6	180.0	180.1
C7	C5A	C4A	N3	180.3	180.0
C7	C5A	C4A	O4A	0.1	0.0
C4A	C5A	C7	C6A	179.7	179.9
C7	C5A	C6A	N1	179.7	180.0
C7	C5A	C6A	H6	359.7	360.0
H7	C7	C5A	H7A	240.0	240.1
H7	C7	C5A	H7B	120.0	120.0
H7A	C7	C5A	H7B	240.0	239.9
C6A	N1	C2A	N3	0.3	0.0
C6A	N1	C2A	O2A	180.4	179.7
C2A	N1	C6A	C1	179.7	180.0
N1	C6A	C5A	C7	179.7	180.0
C5A	C6A	N1	H6	180.0	179.9
C6A	N1	C1	C2	317.0	115.0
C6A	N1	C1	O5	84.2	234.9
C6A	N1	C1	H1	200.9	354.9
C1	N1	C2A	N3	180.0	180.0
C1	N1	C2A	O2A	0.1	359.7
C2A	N1	C1	C6A	180.3	180.0
C1	N1	C6A	H6	0.2	0.0
C2	C1	N1	O5	232.8	240.1
N1	C1	C2	C3	179.2	177.6
N1	C1	C2	O2	302.7	297.5
C2	C1	N1	H1	116.0	120.1
N1	C1	C2	H2	58.6	57.6
N1	C1	O5	C5	180.0	178.9
O5	C1	N1	H1	243.2	240.0
N1	C1	C2	O5	122.9	120.0
N1	C1	C2	H1	239.0	239.9
C2	C1	O5	C5	303.5	298.8
O5	C1	C2	H1	116.1	120.0
C3	C2	C1	O2	236.4	240.1
C1	C2	C3	C4	303.9	303.0
C1	C2	C3	O3	181.5	183.1
C3	C2	C1	H2	120.5	119.9
C1	C2	C3	H3	62.0	62.9
O2	C2	C1	H2	244.1	239.8
C1	C2	O2	HO2	120.4	180.0
N1	C1	O5	C2	236.5	240.0
N1	C1	O5	H1	121.1	120.0
O5	C1	C2	C3	56.3	57.6
O5	C1	C2	O2	179.9	177.5
C2	C1	O5	H1	244.5	240.0
O5	C1	C2	H2	295.8	297.7
C4	C5	O5	C1	55.8	61.1
C6	C5	O5	C1	180.2	181.2
C1	O5	C5	H5	300.0	301.2
C3	C2	C1	O5	56.3	57.6
C1	C2	C3	O2	123.7	119.9
C3	C2	C1	H1	300.1	297.6
C1	C2	C3	H2	239.7	240.1
O2	C2	C3	H2	115.9	120.2
C3	C2	O2	HO2	240.1	299.6
C4	C3	C2	O3	122.3	119.9
C2	C3	C4	C5	59.3	57.0
C2	C3	C4	O4	180.4	176.9
C4	C3	C2	H3	241.8	240.1
C2	C3	C4	H4	299.7	297.1
O3	C3	C2	H3	119.5	120.2
C2	C3	O3	HO3	52.5	180.0
O2	C2	C1	O5	179.9	177.5
C1	C2	O2	C3	240.3	240.3
O2	C2	C1	H1	63.7	57.5
C1	C2	O2	H2	120.0	120.1
O2	C2	C3	C4	180.2	183.1
O2	C2	C3	O3	57.8	63.3
C3	C2	O2	H2	239.8	239.8
O2	C2	C3	H3	298.3	303.0
C4	C3	C2	O2	180.2	183.1
C2	C3	C4	O3	239.0	240.1
C4	C3	C2	H2	64.2	62.9
C2	C3	C4	H3	119.6	119.9
O3	C3	C4	H3	240.6	239.8
C4	C3	O3	HO3	290.3	60.4
C5	C4	C3	O4	238.9	240.1
C3	C4	C5	C6	180.8	182.4
C3	C4	C5	O5	301.5	302.4
C5	C4	C3	H4	119.7	119.9
C3	C4	C5	H5	61.4	62.4
O4	C4	C3	H4	240.8	239.8
C3	C4	O4	HO4	94.3	60.0
O3	C3	C2	O2	57.8	63.3
C2	C3	O3	C4	122.3	119.6
O3	C3	C2	H2	301.9	303.0
C2	C3	O3	H3	240.4	239.8
O3	C3	C4	C5	180.3	176.9
O3	C3	C4	O4	301.4	296.8
C4	C3	O3	H3	118.1	120.2
O3	C3	C4	H4	60.7	57.0
C1	O5	C5	C4	55.8	61.1
C5	C4	C3	O3	180.3	176.9
C3	C4	C5	O4	121.1	119.9
C5	C4	C3	H3	299.8	297.1
C3	C4	C5	H4	240.3	240.1
O4	C4	C5	H4	119.2	120.1
C5	C4	O4	HO4	215.0	179.7
C6	C5	C4	O5	239.3	240.0
C4	C5	C6	O6	63.5	185.0
C6	C5	C4	H5	119.4	120.0
C4	C5	C6	H61	183.5	305.0
C4	C5	C6	H62	303.0	65.1
O5	C5	C4	H5	240.1	240.0
O4	C4	C3	O3	301.4	296.8
C3	C4	O4	C5	239.3	240.3
O4	C4	C3	H3	60.9	57.0
C3	C4	O4	H4	119.7	120.2
O4	C4	C5	C6	59.6	62.5
O4	C4	C5	O5	180.3	182.5
C5	C4	O4	H4	240.3	239.9
O4	C4	C5	H5	300.2	302.4
C1	O5	C5	C6	180.2	181.2
C6	C5	C4	O4	59.6	62.5
C4	C5	C6	O5	124.0	120.0
C6	C5	C4	H4	300.4	302.3
C4	C5	C6	H5	244.3	240.0
O5	C5	C6	H5	120.2	120.0
O6	C6	C5	H61	240.0	239.9
O6	C6	C5	H62	120.5	119.9
C5	C6	O6	HO6	109.6	180.0
H61	C6	C5	H62	240.5	240.0
C5	O5	C1	H1	58.9	58.8
O5	C5	C4	O4	180.3	182.5
C4	C5	O5	C6	235.6	240.0
O5	C5	C4	H4	61.1	62.3
C4	C5	O5	H5	115.8	119.9
O5	C5	C6	O6	299.5	65.0
C6	C5	O5	H5	240.2	240.0
O5	C5	C6	H61	59.5	185.1
O5	C5	C6	H62	179.0	305.1
O6	C6	C5	O5	299.5	65.0
O6	C6	C5	H5	179.3	305.0
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	239.5	240.0
H61	C6	O6	H62	119.5	120.0
H6	C6A	C5A	C7	359.7	360.0
C5A	C6A	H6	N1	180.0	180.1
H6	C6A	N1	C1	0.2	0.0
C5A	C7	H7	H7A	120.0	119.9
C5A	C7	H7	H7B	240.0	240.0
H7A	C7	H7	H7B	120.0	120.1
C5A	C7	H7A	H7	240.0	240.1
C5A	C7	H7A	H7B	120.0	120.1
H7	C7	H7A	H7B	240.0	240.0
C5A	C7	H7B	H7	120.0	120.0
C5A	C7	H7B	H7A	240.0	240.0
H7	C7	H7B	H7A	120.0	120.0
HN3	N3	C2A	O2A	359.7	0.3
C2A	N3	HN3	C4A	180.0	180.0
HN3	N3	C4A	O4A	0.3	360.0
N1	C1	H1	C2	118.9	120.0
N1	C1	H1	O5	241.8	240.0
C2	C1	H1	O5	122.9	119.9
H1	C1	C2	C3	300.1	297.6
H1	C1	C2	O2	63.7	57.5
H1	C1	C2	H2	179.6	177.7
H1	C1	O5	C5	58.9	58.8
H2	C2	C1	O5	295.8	297.7
C1	C2	H2	C3	117.3	119.7
C1	C2	H2	O2	238.6	239.9
H2	C2	C1	H1	179.6	177.7
C3	C2	H2	O2	121.3	120.2
H2	C2	C3	C4	64.2	62.9
H2	C2	C3	O3	301.9	303.0
H2	C2	C3	H3	182.4	182.8
H2	C2	O2	HO2	0.3	59.8
H3	C3	C2	O2	298.3	303.0
C2	C3	H3	C4	239.6	240.4
C2	C3	H3	O3	119.1	120.2
H3	C3	C2	H2	182.4	182.8
C4	C3	H3	O3	239.5	239.8
H3	C3	C4	C5	299.8	297.1
H3	C3	C4	O4	60.9	57.0
H3	C3	C4	H4	180.1	177.2
H3	C3	O3	HO3	172.2	300.2
H4	C4	C3	O3	60.7	57.0
C3	C4	H4	C5	119.7	119.7
C3	C4	H4	O4	239.8	239.8
H4	C4	C3	H3	180.1	177.2
C5	C4	H4	O4	120.1	120.1
H4	C4	C5	C6	300.4	302.3
H4	C4	C5	O5	61.1	62.3
H4	C4	C5	H5	181.0	182.3
H4	C4	O4	HO4	334.7	299.8
H5	C5	C4	O4	300.2	302.4
C4	C5	H5	C6	121.4	120.0
C4	C5	H5	O5	239.0	240.1
H5	C5	C4	H4	181.0	182.3
C6	C5	H5	O5	117.6	120.1
H5	C5	C6	O6	179.3	305.0
H5	C5	C6	H61	299.3	65.1
H5	C5	C6	H62	58.8	185.1
H61	C6	C5	O5	59.5	185.1
C5	C6	H61	O6	241.1	239.9
H61	C6	C5	H5	299.3	65.1
C5	C6	H61	H62	120.6	120.0
O6	C6	H61	H62	239.5	240.1
H61	C6	O6	HO6	349.6	59.9
H62	C6	C5	O5	179.0	305.1
C5	C6	H62	O6	119.3	120.0
H62	C6	C5	H5	58.8	185.1
C5	C6	H62	H61	239.7	240.0
O6	C6	H62	H61	120.4	120.0
H62	C6	O6	HO6	230.1	299.9
HO6	O6	C6	H61	349.6	59.9
HO6	O6	C6	H62	230.1	299.9
HO2	O2	C2	H2	0.3	59.8
HO3	O3	C3	H3	172.2	300.2
HO4	O4	C4	H4	334.7	299.8