PDB Chemical Component CK8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CK8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 N1 1.354 1.323
C6 C5 1.426 1.382
C6 H6 1.103 1.081
N1 C2 1.332 1.325
C2 N3 1.332 1.322
C2 N7 1.435 1.385
N3 C4 1.348 1.333
C4 C5 1.450 1.400
C4 C5A 1.447 1.476
C5 H5 1.103 1.081
C5A C1A 1.414 1.372
C5A S4A 1.750 1.787
C1A N2A 1.376 1.312
C1A C6A 1.525 1.508
N2A C3A 1.334 1.315
C3A S4A 1.699 1.736
C3A C7A 1.515 1.506
C6A H6A1 1.115 1.090
C6A H6A2 1.115 1.090
C6A H6A3 1.115 1.091
C7A H7A1 1.115 1.090
C7A H7A2 1.116 1.090
C7A H7A3 1.115 1.089
N7 C1B 1.456 1.401
N7 HN7 1.020 0.970
C1B C2B 1.431 1.388
C1B C6B 1.420 1.388
C2B C3B 1.412 1.381
C2B H2B 1.103 1.079
C3B C4B 1.440 1.388
C3B H3B 1.103 1.080
C4B C5B 1.440 1.388
C4B N7B 1.505 1.399
C5B C6B 1.414 1.380
C5B H5B 1.103 1.081
C6B H6B 1.103 1.081
N7B C8B 1.494 1.465
N7B C9B 1.495 1.465
C8B H8B1 1.115 1.089
C8B H8B2 1.115 1.089
C8B H8B3 1.115 1.089
C9B H9B1 1.115 1.090
C9B H9B2 1.115 1.090
C9B H9B3 1.115 1.090

Bond Angles for CK8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C6 C5 121.5 119.3
N1 C6 H6 116.6 120.4
C6 N1 C2 118.1 121.0
C5 C6 H6 121.9 120.3
C6 C5 C4 116.3 118.4
C6 C5 H5 121.1 120.8
N1 C2 N3 124.8 121.8
N1 C2 N7 115.6 119.1
N3 C2 N7 119.6 119.1
C2 N3 C4 120.7 120.5
C2 N7 C1B 136.0 120.0
C2 N7 HN7 103.2 120.0
N3 C4 C5 118.7 118.9
N3 C4 C5A 116.1 120.5
C5 C4 C5A 125.3 120.5
C4 C5 H5 122.6 120.8
C4 C5A C1A 134.9 129.8
C4 C5A S4A 116.8 129.7
C1A C5A S4A 108.3 100.5
C5A C1A N2A 115.0 118.1
C5A C1A C6A 128.1 120.9
C5A S4A C3A 90.2 97.5
N2A C1A C6A 116.9 121.0
C1A N2A C3A 110.6 121.6
C1A C6A H6A1 105.7 109.5
C1A C6A H6A2 128.1 109.4
C1A C6A H6A3 105.7 109.4
N2A C3A S4A 115.9 102.3
N2A C3A C7A 124.0 128.8
S4A C3A C7A 120.0 128.9
C3A C7A H7A1 107.0 109.5
C3A C7A H7A2 124.0 109.5
C3A C7A H7A3 107.1 109.5
H6A1 C6A H6A2 105.7 109.5
H6A1 C6A H6A3 103.7 109.5
H6A2 C6A H6A3 105.7 109.5
H7A1 C7A H7A2 107.1 109.4
H7A1 C7A H7A3 102.6 109.4
H7A2 C7A H7A3 107.1 109.5
C1B N7 HN7 103.1 120.0
N7 C1B C2B 123.2 120.0
N7 C1B C6B 117.7 120.0
C2B C1B C6B 119.2 120.0
C1B C2B C3B 120.5 120.0
C1B C2B H2B 120.4 120.0
C1B C6B C5B 120.5 120.0
C1B C6B H6B 120.0 120.0
C3B C2B H2B 119.1 120.0
C2B C3B C4B 121.0 120.0
C2B C3B H3B 118.5 120.0
C4B C3B H3B 120.4 120.0
C3B C4B C5B 117.6 120.0
C3B C4B N7B 120.9 120.1
C5B C4B N7B 121.5 120.0
C4B C5B C6B 121.2 120.0
C4B C5B H5B 120.3 120.0
C4B N7B C8B 122.7 120.1
C4B N7B C9B 122.5 120.0
C6B C5B H5B 118.4 120.0
C5B C6B H6B 119.5 120.0
C8B N7B C9B 114.7 120.0
N7B C8B H8B1 107.5 109.5
N7B C8B H8B2 122.7 109.4
N7B C8B H8B3 107.5 109.4
N7B C9B H9B1 107.6 109.5
N7B C9B H9B2 122.5 109.4
N7B C9B H9B3 107.6 109.5
H8B1 C8B H8B2 107.5 109.5
H8B1 C8B H8B3 102.3 109.5
H8B2 C8B H8B3 107.5 109.5
H9B1 C9B H9B2 107.6 109.5
H9B1 C9B H9B3 102.2 109.5
H9B2 C9B H9B3 107.6 109.5

Torsion Angles for CK8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 359.9 0.0
N1 C6 C5 H5 179.9 180.0
C6 N1 C2 N3 0.1 0.3
C6 N1 C2 N7 180.2 180.0
N1 C6 C5 H6 180.0 180.0
C5 C6 N1 C2 359.9 360.0
N3 C4 C5 C6 0.3 359.7
C6 C5 C4 C5A 180.0 180.0
C4 C5 C6 H5 180.0 180.1
N1 C6 H6 C5 180.0 180.0
H6 C6 N1 C2 179.9 180.0
H6 C6 C5 C4 179.9 180.0
H6 C6 C5 H5 359.9 360.0
C2 N1 C6 C5 359.9 360.0
C2 N1 C6 H6 179.9 180.0
N3 C2 N1 N7 180.0 180.3
N1 C2 N3 C4 0.1 359.4
N1 C2 N7 C1B 179.0 354.5
N1 C2 N7 HN7 53.8 174.4
N1 C2 N3 N7 180.1 179.7
N3 C2 N7 C1B 359.1 174.1
N3 C2 N7 HN7 233.9 354.1
C2 N3 C4 C5 359.7 0.6
C2 N3 C4 C5A 180.0 180.3
N1 C2 N7 N3 180.0 180.3
N7 C2 N3 C4 180.1 179.7
C1B N7 C2 HN7 125.2 180.1
C2 N7 C1B C2B 358.5 326.5
C2 N7 C1B C6B 178.6 146.7
C6 C5 C4 N3 0.3 359.7
C4 N3 C2 N7 180.1 179.7
C5 C4 N3 C5A 179.7 180.3
N3 C4 C5 H5 180.3 179.8
N3 C4 C5A C1A 193.0 0.1
N3 C4 C5A S4A 12.9 180.3
C4 C5 C6 H6 179.9 180.0
C6 C5 C4 H5 180.0 179.9
N3 C4 C5 C5A 180.3 179.7
C5 C4 C5A C1A 13.3 179.8
C5 C4 C5A S4A 193.3 360.0
N3 C4 C5A C5 179.7 180.3
C5A C4 C5 H5 360.0 0.1
C1A C5A C4 S4A 180.1 179.8
C4 C5A C1A N2A 180.0 179.7
C4 C5A C1A C6A 0.1 0.2
C4 C5A S4A C3A 179.9 180.1
H5 C5 C6 H6 359.9 360.0
C6 C5 H5 C4 180.0 180.1
H5 C5 C4 C5A 360.0 0.1
C4 C5A C1A S4A 179.9 180.2
C1A C5A S4A C3A 359.9 0.2
N2A C1A C5A C6A 180.0 179.5
C5A C1A N2A C3A 0.0 0.5
C5A C1A C6A H6A1 54.7 269.5
C5A C1A C6A H6A2 180.0 29.5
C5A C1A C6A H6A3 305.2 149.4
C4 C5A S4A C1A 180.0 179.8
S4A C5A C1A N2A 0.1 359.6
S4A C5A C1A C6A 180.1 180.1
N2A C3A S4A C5A 0.2 0.0
C5A S4A C3A C7A 180.1 180.1
N2A C1A C5A S4A 0.1 359.6
C5A C1A N2A C6A 180.0 180.5
N2A C1A C6A H6A1 234.8 90.0
N2A C1A C6A H6A2 0.0 210.0
N2A C1A C6A H6A3 125.3 329.9
C1A N2A C3A S4A 359.9 359.7
C1A N2A C3A C7A 179.9 179.7
C6A C1A C5A S4A 180.1 180.1
C5A C1A C6A N2A 180.0 179.5
C6A C1A N2A C3A 180.0 180.0
H6A1 C6A C1A H6A2 234.7 240.0
H6A1 C6A C1A H6A3 109.5 120.0
H6A2 C6A C1A H6A3 234.8 240.0
C5A S4A C3A N2A 0.2 0.0
C3A N2A C1A C6A 180.0 180.0
S4A C3A N2A C7A 180.0 180.1
N2A C3A C7A H7A1 54.7 0.1
N2A C3A C7A H7A2 180.0 120.0
N2A C3A C7A H7A3 305.3 240.1
N2A C3A S4A C7A 180.0 179.9
S4A C3A C7A H7A1 234.8 180.0
S4A C3A C7A H7A2 0.0 299.9
S4A C3A C7A H7A3 125.3 60.0
N2A C3A C7A S4A 180.0 180.1
H7A1 C7A C3A H7A2 234.7 240.1
H7A1 C7A C3A H7A3 109.4 120.0
H7A2 C7A C3A H7A3 234.7 239.9
C1A C6A H6A1 H6A2 138.1 120.0
C1A C6A H6A1 H6A3 249.1 240.0
H6A2 C6A H6A1 H6A3 110.9 120.1
C1A C6A H6A2 H6A1 234.8 240.0
C1A C6A H6A2 H6A3 125.2 119.9
H6A1 C6A H6A2 H6A3 250.5 239.9
C1A C6A H6A3 H6A1 110.9 120.0
C1A C6A H6A3 H6A2 221.9 240.1
H6A1 C6A H6A3 H6A2 110.9 120.1
C3A C7A H7A1 H7A2 135.0 120.0
C3A C7A H7A1 H7A3 247.5 240.0
H7A2 C7A H7A1 H7A3 112.5 120.0
C3A C7A H7A2 H7A1 234.7 240.0
C3A C7A H7A2 H7A3 125.3 120.1
H7A1 C7A H7A2 H7A3 250.5 240.1
C3A C7A H7A3 H7A1 112.5 120.1
C3A C7A H7A3 H7A2 225.0 239.9
H7A1 C7A H7A3 H7A2 112.5 119.9
C2 N7 C1B HN7 234.8 179.9
C2B C1B N7 C6B 179.8 179.9
N7 C1B C2B C3B 179.9 180.1
N7 C1B C2B H2B 359.9 0.1
N7 C1B C6B C5B 180.3 179.7
N7 C1B C6B H6B 0.3 359.9
C2 N7 HN7 C1B 144.3 180.1
HN7 N7 C1B C2B 123.7 146.6
HN7 N7 C1B C6B 303.9 326.7
C2B C1B N7 HN7 123.7 146.6
N7 C1B C2B C6B 180.2 180.1
C2B C1B C6B C5B 0.4 359.8
C2B C1B C6B H6B 180.5 180.0
C3B C2B C1B H2B 180.0 180.0
C1B C2B C3B C4B 360.0 0.0
C1B C2B C3B H3B 180.0 180.0
C6B C1B N7 HN7 303.9 326.7
N7 C1B C6B C2B 179.8 179.9
C6B C1B C2B C3B 359.7 359.9
C6B C1B C2B H2B 179.7 180.0
C4B C5B C6B C1B 359.8 0.5
C1B C6B C5B H5B 179.8 179.9
C5B C6B C1B H6B 180.0 179.8
C3B C2B C1B C6B 359.7 359.9
C1B C2B C3B H2B 180.0 180.0
C4B C3B C2B H3B 180.0 180.0
C2B C3B C4B C5B 0.2 0.3
C2B C3B C4B N7B 180.3 180.0
H2B C2B C1B C6B 179.7 180.0
C1B C2B H2B C3B 180.0 180.0
H2B C2B C3B C4B 180.0 180.0
H2B C2B C3B H3B 360.0 0.0
C4B C3B C2B H2B 180.0 180.0
C2B C3B C4B H3B 180.0 180.0
C5B C4B C3B N7B 179.9 180.3
C3B C4B C5B C6B 359.9 359.5
C3B C4B C5B H5B 179.9 180.0
C3B C4B N7B C8B 180.0 180.0
C3B C4B N7B C9B 0.1 0.0
H3B C3B C2B H2B 360.0 0.0
C2B C3B H3B C4B 180.0 180.0
H3B C3B C4B C5B 180.2 180.2
H3B C3B C4B N7B 0.3 359.9
C1B C6B C5B C4B 359.8 0.5
C5B C4B C3B H3B 180.2 180.2
C3B C4B C5B N7B 180.1 179.7
C5B C4B N7B C8B 0.0 359.7
C5B C4B N7B C9B 180.1 179.7
C6B C5B C4B H5B 180.0 179.5
C4B C5B C6B H6B 179.7 180.3
N7B C4B C3B H3B 0.3 359.9
C3B C4B N7B C5B 179.9 180.3
N7B C4B C5B C6B 179.8 179.8
N7B C4B C5B H5B 359.8 0.3
C8B N7B C4B C9B 179.9 180.0
C4B N7B C8B H8B1 54.8 180.0
C4B N7B C8B H8B2 180.0 300.0
C4B N7B C8B H8B3 305.2 60.0
C4B N7B C9B H9B1 54.7 180.0
C4B N7B C9B H9B2 180.0 300.0
C4B N7B C9B H9B3 305.3 60.0
C1B C6B C5B H6B 180.0 180.2
C6B C5B C4B N7B 179.8 179.8
C4B C5B C6B H5B 180.0 180.5
H5B C5B C4B N7B 359.8 0.3
C4B C5B H5B C6B 180.0 179.5
H5B C5B C6B H6B 359.7 359.8
C1B C6B H6B C5B 180.0 179.8
H6B C6B C5B H5B 359.7 359.8
C4B N7B C8B C9B 180.1 180.0
C8B N7B C9B H9B1 234.8 0.0
C8B N7B C9B H9B2 0.1 120.0
C8B N7B C9B H9B3 125.4 240.0
H8B1 C8B N7B H8B2 234.8 239.9
H8B1 C8B N7B H8B3 109.5 120.0
H8B2 C8B N7B H8B3 234.7 240.0
C4B N7B C9B C8B 179.9 180.0
C9B N7B C8B H8B1 234.7 359.9
C9B N7B C8B H8B2 359.9 120.0
C9B N7B C8B H8B3 125.2 240.0
H9B1 C9B N7B H9B2 234.7 240.0
H9B1 C9B N7B H9B3 109.5 120.0
H9B2 C9B N7B H9B3 234.7 240.0
H8B1 C8B N7B C9B 234.7 359.9
N7B C8B H8B1 H8B2 133.9 120.0
N7B C8B H8B1 H8B3 246.9 240.1
H8B2 C8B H8B1 H8B3 113.0 120.1
H8B2 C8B N7B C9B 359.9 120.0
N7B C8B H8B2 H8B1 234.8 240.0
N7B C8B H8B2 H8B3 125.3 119.9
H8B1 C8B H8B2 H8B3 250.5 239.9
H8B3 C8B N7B C9B 125.2 240.0
N7B C8B H8B3 H8B1 113.1 120.0
N7B C8B H8B3 H8B2 226.1 240.1
H8B1 C8B H8B3 H8B2 113.0 120.1
N7B C9B H9B1 H9B2 133.8 120.0
N7B C9B H9B1 H9B3 246.9 240.0
H9B2 C9B H9B1 H9B3 113.1 120.0
N7B C9B H9B2 H9B1 234.7 240.0
N7B C9B H9B2 H9B3 125.3 120.0
H9B1 C9B H9B2 H9B3 250.6 240.0
N7B C9B H9B3 H9B1 113.1 120.0
N7B C9B H9B3 H9B2 226.2 240.0
H9B1 C9B H9B3 H9B2 113.1 120.0