PDB Chemical Component CK7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CK7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N7A |
C3A |
1.495 |
1.382 |
| N7A |
H7A1 |
1.020 |
0.970 |
| N7A |
H7A2 |
1.020 |
0.970 |
| C3A |
N2A |
1.354 |
1.323 |
| C3A |
S4A |
1.671 |
1.737 |
| N2A |
C1A |
1.380 |
1.312 |
| C1A |
C6A |
1.501 |
1.507 |
| C1A |
C5A |
1.528 |
1.372 |
| C6A |
H6A1 |
1.115 |
1.090 |
| C6A |
H6A2 |
1.115 |
1.090 |
| C6A |
H6A3 |
1.115 |
1.091 |
| S4A |
C5A |
1.659 |
1.787 |
| C5A |
C4 |
1.487 |
1.473 |
| C4 |
N3 |
1.373 |
1.334 |
| C4 |
C5 |
1.386 |
1.402 |
| N3 |
C2 |
1.330 |
1.323 |
| C5 |
C6 |
1.367 |
1.380 |
| C5 |
H5 |
1.103 |
1.081 |
| C6 |
N1 |
1.368 |
1.326 |
| C6 |
H6 |
1.103 |
1.080 |
| N1 |
C2 |
1.317 |
1.325 |
| C2 |
N7 |
1.319 |
1.385 |
| N7 |
C1B |
1.465 |
1.398 |
| N7 |
HN7 |
1.020 |
0.970 |
| C1B |
C6B |
1.423 |
1.389 |
| C1B |
C2B |
1.432 |
1.389 |
| C6B |
C5B |
1.432 |
1.382 |
| C6B |
H6B |
1.103 |
1.080 |
| C2B |
C3B |
1.435 |
1.381 |
| C2B |
H2B |
1.104 |
1.079 |
| C3B |
N7B |
1.402 |
1.479 |
| C3B |
C4B |
1.401 |
1.383 |
| N7B |
O8B |
1.251 |
1.218 |
| N7B |
O9B |
1.251 |
1.218 |
| C4B |
C5B |
1.417 |
1.383 |
| C4B |
H4B |
1.103 |
1.079 |
| C5B |
H5B |
1.103 |
1.080 |
Bond Angles for CK7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3A |
N7A |
H7A1 |
103.4 |
120.0 |
| C3A |
N7A |
H7A2 |
135.0 |
120.0 |
| N7A |
C3A |
N2A |
135.0 |
128.8 |
| N7A |
C3A |
S4A |
109.8 |
128.8 |
| H7A1 |
N7A |
H7A2 |
103.5 |
119.9 |
| N2A |
C3A |
S4A |
115.2 |
102.3 |
| C3A |
N2A |
C1A |
114.3 |
121.4 |
| C3A |
S4A |
C5A |
91.6 |
97.5 |
| N2A |
C1A |
C6A |
121.5 |
121.0 |
| N2A |
C1A |
C5A |
106.6 |
118.2 |
| C6A |
C1A |
C5A |
131.7 |
120.9 |
| C1A |
C6A |
H6A1 |
107.9 |
109.5 |
| C1A |
C6A |
H6A2 |
121.6 |
109.5 |
| C1A |
C6A |
H6A3 |
107.9 |
109.4 |
| C1A |
C5A |
S4A |
112.1 |
100.6 |
| C1A |
C5A |
C4 |
133.9 |
129.7 |
| H6A1 |
C6A |
H6A2 |
107.9 |
109.5 |
| H6A1 |
C6A |
H6A3 |
101.9 |
109.4 |
| H6A2 |
C6A |
H6A3 |
107.9 |
109.4 |
| S4A |
C5A |
C4 |
111.4 |
129.7 |
| C5A |
C4 |
N3 |
117.1 |
120.6 |
| C5A |
C4 |
C5 |
121.5 |
120.6 |
| N3 |
C4 |
C5 |
121.3 |
118.9 |
| C4 |
N3 |
C2 |
121.5 |
120.6 |
| C4 |
C5 |
C6 |
115.3 |
118.5 |
| C4 |
C5 |
H5 |
123.0 |
120.7 |
| N3 |
C2 |
N1 |
117.7 |
121.7 |
| N3 |
C2 |
N7 |
127.1 |
119.2 |
| C6 |
C5 |
H5 |
121.7 |
120.8 |
| C5 |
C6 |
N1 |
120.7 |
119.3 |
| C5 |
C6 |
H6 |
119.6 |
120.4 |
| N1 |
C6 |
H6 |
119.7 |
120.3 |
| C6 |
N1 |
C2 |
123.3 |
121.0 |
| N1 |
C2 |
N7 |
115.2 |
119.1 |
| C2 |
N7 |
C1B |
120.2 |
120.0 |
| C2 |
N7 |
HN7 |
108.3 |
120.0 |
| C1B |
N7 |
HN7 |
108.4 |
120.0 |
| N7 |
C1B |
C6B |
120.7 |
120.0 |
| N7 |
C1B |
C2B |
123.1 |
120.1 |
| C6B |
C1B |
C2B |
116.1 |
119.9 |
| C1B |
C6B |
C5B |
120.4 |
119.9 |
| C1B |
C6B |
H6B |
119.5 |
120.1 |
| C1B |
C2B |
C3B |
123.8 |
119.9 |
| C1B |
C2B |
H2B |
118.1 |
120.0 |
| C5B |
C6B |
H6B |
120.1 |
120.1 |
| C6B |
C5B |
C4B |
121.9 |
120.1 |
| C6B |
C5B |
H5B |
119.6 |
119.9 |
| C3B |
C2B |
H2B |
118.2 |
120.0 |
| C2B |
C3B |
N7B |
126.2 |
120.0 |
| C2B |
C3B |
C4B |
118.6 |
120.1 |
| N7B |
C3B |
C4B |
115.3 |
120.0 |
| C3B |
N7B |
O8B |
120.6 |
120.0 |
| C3B |
N7B |
O9B |
119.7 |
120.0 |
| C3B |
C4B |
C5B |
119.2 |
120.1 |
| C3B |
C4B |
H4B |
119.8 |
119.9 |
| O8B |
N7B |
O9B |
119.7 |
119.9 |
| C5B |
C4B |
H4B |
120.9 |
119.9 |
| C4B |
C5B |
H5B |
118.5 |
120.0 |
Torsion Angles for CK7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H7A1 |
N7A |
C3A |
H7A2 |
234.7 |
180.1 |
| N2A |
C3A |
N7A |
S4A |
177.9 |
180.1 |
| N7A |
C3A |
N2A |
C1A |
179.8 |
180.0 |
| N7A |
C3A |
S4A |
C5A |
177.0 |
179.9 |
| C3A |
N7A |
H7A1 |
H7A2 |
143.6 |
179.9 |
| H7A1 |
N7A |
C3A |
N2A |
54.7 |
0.0 |
| H7A1 |
N7A |
C3A |
S4A |
236.8 |
180.0 |
| C3A |
N7A |
H7A2 |
H7A1 |
234.7 |
180.1 |
| H7A2 |
N7A |
C3A |
N2A |
180.0 |
180.0 |
| H7A2 |
N7A |
C3A |
S4A |
2.1 |
359.9 |
| N2A |
C3A |
N7A |
H7A1 |
54.7 |
0.0 |
| N2A |
C3A |
N7A |
H7A2 |
180.0 |
180.0 |
| N7A |
C3A |
N2A |
S4A |
182.2 |
179.9 |
| N2A |
C3A |
S4A |
C5A |
358.6 |
359.8 |
| C3A |
N2A |
C1A |
C6A |
180.6 |
180.0 |
| C3A |
N2A |
C1A |
C5A |
5.3 |
0.2 |
| S4A |
C3A |
N7A |
H7A1 |
236.8 |
180.0 |
| S4A |
C3A |
N7A |
H7A2 |
2.1 |
359.9 |
| N7A |
C3A |
S4A |
N2A |
178.3 |
180.1 |
| S4A |
C3A |
N2A |
C1A |
357.6 |
0.1 |
| C1A |
C5A |
S4A |
C3A |
4.4 |
0.2 |
| C3A |
S4A |
C5A |
C4 |
168.6 |
180.1 |
| C1A |
N2A |
C3A |
S4A |
357.6 |
0.1 |
| C6A |
C1A |
N2A |
C5A |
175.4 |
179.8 |
| N2A |
C1A |
C6A |
H6A1 |
54.7 |
89.9 |
| N2A |
C1A |
C6A |
H6A2 |
180.0 |
210.0 |
| N2A |
C1A |
C6A |
H6A3 |
305.3 |
330.0 |
| N2A |
C1A |
C5A |
S4A |
353.8 |
359.7 |
| N2A |
C1A |
C5A |
C4 |
194.3 |
179.9 |
| N2A |
C1A |
C6A |
C5A |
185.9 |
180.2 |
| C6A |
C1A |
C5A |
S4A |
179.0 |
179.9 |
| C6A |
C1A |
C5A |
C4 |
19.6 |
0.1 |
| H6A1 |
C6A |
C1A |
H6A2 |
234.7 |
239.9 |
| H6A1 |
C6A |
C1A |
H6A3 |
109.4 |
120.0 |
| H6A2 |
C6A |
C1A |
H6A3 |
234.7 |
240.1 |
| C3A |
S4A |
C5A |
C1A |
4.4 |
0.2 |
| N2A |
C1A |
C5A |
C6A |
174.7 |
179.8 |
| C5A |
C1A |
C6A |
H6A1 |
228.8 |
269.8 |
| C5A |
C1A |
C6A |
H6A2 |
354.1 |
29.8 |
| C5A |
C1A |
C6A |
H6A3 |
119.4 |
149.8 |
| S4A |
C5A |
C1A |
C4 |
159.5 |
179.8 |
| C1A |
C5A |
C4 |
N3 |
171.6 |
359.5 |
| C1A |
C5A |
C4 |
C5 |
350.3 |
179.7 |
| H6A1 |
C6A |
C1A |
C5A |
228.8 |
269.8 |
| C1A |
C6A |
H6A1 |
H6A2 |
133.0 |
120.1 |
| C1A |
C6A |
H6A1 |
H6A3 |
246.5 |
240.0 |
| H6A2 |
C6A |
H6A1 |
H6A3 |
113.5 |
120.0 |
| H6A2 |
C6A |
C1A |
C5A |
354.1 |
29.8 |
| C1A |
C6A |
H6A2 |
H6A1 |
234.7 |
239.9 |
| C1A |
C6A |
H6A2 |
H6A3 |
125.3 |
119.9 |
| H6A1 |
C6A |
H6A2 |
H6A3 |
250.6 |
240.0 |
| H6A3 |
C6A |
C1A |
C5A |
119.4 |
149.8 |
| C1A |
C6A |
H6A3 |
H6A1 |
113.5 |
120.0 |
| C1A |
C6A |
H6A3 |
H6A2 |
227.0 |
240.0 |
| H6A1 |
C6A |
H6A3 |
H6A2 |
113.5 |
120.0 |
| C1A |
C5A |
S4A |
C4 |
195.7 |
180.2 |
| S4A |
C5A |
C4 |
N3 |
12.0 |
179.7 |
| S4A |
C5A |
C4 |
C5 |
190.7 |
359.9 |
| C1A |
C5A |
C4 |
S4A |
159.6 |
179.8 |
| N3 |
C4 |
C5A |
C5 |
181.3 |
179.8 |
| C5A |
C4 |
N3 |
C2 |
181.0 |
179.7 |
| C5A |
C4 |
C5 |
C6 |
177.8 |
180.0 |
| C5A |
C4 |
C5 |
H5 |
357.8 |
0.0 |
| C5A |
C4 |
N3 |
C5 |
178.7 |
180.2 |
| N3 |
C4 |
C5 |
C6 |
356.4 |
0.2 |
| N3 |
C4 |
C5 |
H5 |
176.5 |
180.2 |
| C4 |
N3 |
C2 |
N1 |
1.3 |
0.5 |
| C4 |
N3 |
C2 |
N7 |
178.8 |
180.2 |
| C5A |
C4 |
C5 |
N3 |
181.3 |
179.8 |
| C5 |
C4 |
N3 |
C2 |
2.2 |
359.5 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
N1 |
1.6 |
0.1 |
| C4 |
C5 |
C6 |
H6 |
181.7 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
2.2 |
359.5 |
| C6 |
N1 |
C2 |
N3 |
356.7 |
359.7 |
| N1 |
C2 |
N3 |
N7 |
182.5 |
180.3 |
| N3 |
C2 |
N7 |
C1B |
335.7 |
174.7 |
| N3 |
C2 |
N7 |
HN7 |
210.5 |
354.8 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| C5 |
C6 |
N1 |
C2 |
1.8 |
360.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
N1 |
181.6 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
1.6 |
359.9 |
| N3 |
C2 |
N1 |
C6 |
356.7 |
359.7 |
| N1 |
C6 |
C5 |
H5 |
181.6 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.9 |
| C6 |
N1 |
C2 |
N7 |
178.9 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
1.6 |
359.9 |
| C5 |
C6 |
H6 |
N1 |
180.0 |
180.1 |
| H6 |
C6 |
N1 |
C2 |
181.8 |
180.0 |
| N3 |
C2 |
N1 |
N7 |
177.8 |
179.7 |
| C2 |
N1 |
C6 |
H6 |
181.8 |
180.0 |
| N1 |
C2 |
N7 |
C1B |
153.3 |
354.5 |
| N1 |
C2 |
N7 |
HN7 |
28.0 |
174.5 |
| N3 |
C2 |
N7 |
N1 |
182.4 |
180.3 |
| C1B |
N7 |
C2 |
HN7 |
125.3 |
180.0 |
| C2 |
N7 |
C1B |
C6B |
199.3 |
146.4 |
| C2 |
N7 |
C1B |
C2B |
16.7 |
326.1 |
| C2 |
N7 |
C1B |
HN7 |
234.8 |
180.0 |
| C6B |
C1B |
N7 |
C2B |
182.7 |
180.3 |
| N7 |
C1B |
C6B |
C5B |
177.3 |
180.0 |
| N7 |
C1B |
C6B |
H6B |
357.3 |
360.0 |
| N7 |
C1B |
C2B |
C3B |
182.2 |
179.7 |
| N7 |
C1B |
C2B |
H2B |
2.2 |
0.3 |
| C2 |
N7 |
HN7 |
C1B |
132.0 |
180.0 |
| HN7 |
N7 |
C1B |
C6B |
324.6 |
326.4 |
| HN7 |
N7 |
C1B |
C2B |
141.9 |
146.1 |
| C6B |
C1B |
N7 |
HN7 |
324.6 |
326.4 |
| N7 |
C1B |
C6B |
C2B |
177.5 |
179.7 |
| C6B |
C1B |
C2B |
C3B |
359.7 |
359.4 |
| C6B |
C1B |
C2B |
H2B |
179.7 |
180.0 |
| C5B |
C6B |
C1B |
H6B |
180.0 |
180.0 |
| C1B |
C6B |
C5B |
C4B |
1.4 |
0.0 |
| C1B |
C6B |
C5B |
H5B |
181.4 |
180.0 |
| C2B |
C1B |
N7 |
HN7 |
141.9 |
146.1 |
| N7 |
C1B |
C2B |
C6B |
182.5 |
180.3 |
| C2B |
C1B |
C6B |
C5B |
359.8 |
0.3 |
| C2B |
C1B |
C6B |
H6B |
179.8 |
180.3 |
| C3B |
C2B |
C1B |
H2B |
180.0 |
179.4 |
| C1B |
C2B |
C3B |
N7B |
179.7 |
180.3 |
| C1B |
C2B |
C3B |
C4B |
359.7 |
0.6 |
| C5B |
C6B |
C1B |
C2B |
359.8 |
0.3 |
| C1B |
C6B |
C5B |
H6B |
180.0 |
180.0 |
| C3B |
C4B |
C5B |
C6B |
358.0 |
0.0 |
| C6B |
C5B |
C4B |
H4B |
178.0 |
180.0 |
| C4B |
C5B |
C6B |
H5B |
180.0 |
180.0 |
| H6B |
C6B |
C1B |
C2B |
179.8 |
180.3 |
| C1B |
C6B |
H6B |
C5B |
180.0 |
180.0 |
| H6B |
C6B |
C5B |
C4B |
181.4 |
180.0 |
| H6B |
C6B |
C5B |
H5B |
1.4 |
359.9 |
| C1B |
C2B |
C3B |
H2B |
180.0 |
180.6 |
| N7B |
C3B |
C2B |
C4B |
180.0 |
179.7 |
| C2B |
C3B |
N7B |
O8B |
263.9 |
180.3 |
| C2B |
C3B |
N7B |
O9B |
83.7 |
0.3 |
| C2B |
C3B |
C4B |
C5B |
1.5 |
359.7 |
| C2B |
C3B |
C4B |
H4B |
181.5 |
179.7 |
| C1B |
C2B |
H2B |
C3B |
180.0 |
179.4 |
| H2B |
C2B |
C3B |
N7B |
359.7 |
359.7 |
| H2B |
C2B |
C3B |
C4B |
179.7 |
180.0 |
| N7B |
C3B |
C2B |
H2B |
359.7 |
359.7 |
| C2B |
C3B |
N7B |
C4B |
180.0 |
180.3 |
| N7B |
C3B |
C4B |
C5B |
181.5 |
180.0 |
| N7B |
C3B |
C4B |
H4B |
1.5 |
360.0 |
| O8B |
N7B |
C3B |
O9B |
180.2 |
180.0 |
| C6B |
C5B |
C4B |
C3B |
358.0 |
0.0 |
| C4B |
C3B |
C2B |
H2B |
179.7 |
180.0 |
| C2B |
C3B |
C4B |
N7B |
180.0 |
179.7 |
| C4B |
C3B |
N7B |
O8B |
83.9 |
360.0 |
| C4B |
C3B |
N7B |
O9B |
263.7 |
180.0 |
| C5B |
C4B |
C3B |
H4B |
180.0 |
180.0 |
| C3B |
C4B |
C5B |
H5B |
178.0 |
180.1 |
| O8B |
N7B |
C3B |
C4B |
83.9 |
360.0 |
| C3B |
N7B |
O8B |
O9B |
179.8 |
180.0 |
| O9B |
N7B |
C3B |
C4B |
263.7 |
180.0 |
| C3B |
N7B |
O9B |
O8B |
180.2 |
180.0 |
| C4B |
C5B |
C6B |
H6B |
181.4 |
180.0 |
| C6B |
C5B |
C4B |
H5B |
180.0 |
180.0 |
| C3B |
C4B |
C5B |
H4B |
180.0 |
180.0 |
| C3B |
C4B |
H4B |
C5B |
180.0 |
180.0 |
| H4B |
C4B |
C5B |
H5B |
358.0 |
0.1 |
| H5B |
C5B |
C6B |
H6B |
1.4 |
359.9 |
| C6B |
C5B |
H5B |
C4B |
180.0 |
180.0 |
| H5B |
C5B |
C4B |
H4B |
358.0 |
0.1 |