PDB Chemical Component CK5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for CK5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O7B	C3B	1.364	1.359
O7B	H7B	0.950	0.967
C3B	C2B	1.422	1.387
C3B	C4B	1.412	1.387
C2B	C1B	1.445	1.387
C2B	H2B	1.103	1.079
C1B	C6B	1.415	1.389
C1B	N7	1.467	1.398
C6B	C5B	1.419	1.382
C6B	H6B	1.103	1.080
C5B	C4B	1.418	1.382
C5B	H5B	1.103	1.080
C4B	H4B	1.103	1.079
N7	C2	1.423	1.385
N7	HN7	1.020	0.970
C2	N1	1.333	1.324
C2	N3	1.311	1.323
N1	C6	1.348	1.325
C6	C5	1.415	1.381
C6	H6	1.103	1.081
N3	C4	1.358	1.333
C4	C5	1.431	1.401
C4	C5A	1.433	1.476
C5	H5	1.103	1.080
C5A	C1A	1.406	1.372
C5A	S4A	1.735	1.787
C1A	C6A	1.526	1.508
C1A	N2A	1.393	1.311
C6A	H6A1	1.115	1.089
C6A	H6A2	1.115	1.090
C6A	H6A3	1.115	1.089
S4A	C3A	1.658	1.735
C3A	N2A	1.322	1.316
C3A	C7A	1.499	1.507
C7A	H7A1	1.114	1.090
C7A	H7A2	1.115	1.090
C7A	H7A3	1.115	1.089

Bond Angles for CK5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3B	O7B	H7B	122.4	106.8
O7B	C3B	C2B	122.4	120.0
O7B	C3B	C4B	118.2	120.0
C2B	C3B	C4B	119.4	120.0
C3B	C2B	C1B	120.9	119.9
C3B	C2B	H2B	118.8	120.1
C3B	C4B	C5B	120.7	120.1
C3B	C4B	H4B	119.4	120.0
C1B	C2B	H2B	120.4	120.1
C2B	C1B	C6B	118.0	119.9
C2B	C1B	N7	126.8	120.0
C6B	C1B	N7	115.2	120.0
C1B	C6B	C5B	121.4	120.0
C1B	C6B	H6B	119.2	120.1
C1B	N7	C2	129.6	120.0
C1B	N7	HN7	105.2	120.0
C5B	C6B	H6B	119.4	119.9
C6B	C5B	C4B	119.7	120.1
C6B	C5B	H5B	120.2	119.9
C4B	C5B	H5B	120.1	119.9
C5B	C4B	H4B	119.9	119.9
C2	N7	HN7	105.2	120.0
N7	C2	N1	113.2	119.1
N7	C2	N3	122.9	119.1
N1	C2	N3	123.8	121.8
C2	N1	C6	119.6	121.0
C2	N3	C4	120.1	120.5
N1	C6	C5	120.5	119.3
N1	C6	H6	117.3	120.3
C5	C6	H6	122.2	120.4
C6	C5	C4	116.3	118.4
C6	C5	H5	121.3	120.8
N3	C4	C5	119.6	118.9
N3	C4	C5A	117.1	120.6
C5	C4	C5A	123.2	120.5
C4	C5	H5	122.4	120.8
C4	C5A	C1A	137.4	129.7
C4	C5A	S4A	115.4	129.8
C1A	C5A	S4A	107.2	100.5
C5A	C1A	C6A	129.6	120.9
C5A	C1A	N2A	113.8	118.1
C5A	S4A	C3A	92.7	97.5
C6A	C1A	N2A	116.6	121.0
C1A	C6A	H6A1	105.2	109.4
C1A	C6A	H6A2	129.6	109.4
C1A	C6A	H6A3	105.2	109.5
C1A	N2A	C3A	112.0	121.6
H6A1	C6A	H6A2	105.2	109.5
H6A1	C6A	H6A3	104.0	109.5
H6A2	C6A	H6A3	105.2	109.5
S4A	C3A	N2A	114.4	102.3
S4A	C3A	C7A	119.4	128.9
N2A	C3A	C7A	126.2	128.8
C3A	C7A	H7A1	108.6	109.5
C3A	C7A	H7A2	119.4	109.4
C3A	C7A	H7A3	108.7	109.5
H7A1	C7A	H7A2	108.7	109.5
H7A1	C7A	H7A3	101.4	109.5
H7A2	C7A	H7A3	108.6	109.5

Torsion Angles for CK5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2B	C3B	O7B	C4B	179.7	180.3
O7B	C3B	C2B	C1B	180.4	180.3
O7B	C3B	C2B	H2B	0.4	359.8
O7B	C3B	C4B	C5B	179.6	180.0
O7B	C3B	C4B	H4B	359.6	0.1
H7B	O7B	C3B	C2B	180.0	270.2
H7B	O7B	C3B	C4B	0.3	89.9
C2B	C3B	O7B	H7B	180.0	270.2
O7B	C3B	C2B	C4B	180.3	179.7
C2B	C3B	C4B	C5B	360.0	359.7
C2B	C3B	C4B	H4B	180.0	179.8
C1B	C2B	C3B	H2B	180.0	180.5
C3B	C2B	C1B	C6B	0.1	359.5
C3B	C2B	C1B	N7	180.1	179.8
C4B	C3B	O7B	H7B	0.3	89.9
O7B	C3B	C4B	C2B	179.7	180.3
C4B	C3B	C2B	C1B	0.1	0.6
C4B	C3B	C2B	H2B	180.1	180.1
C6B	C5B	C4B	C3B	359.8	0.0
C3B	C4B	C5B	H5B	179.8	180.0
C5B	C4B	C3B	H4B	180.0	179.9
C1B	C2B	C3B	C4B	0.1	0.6
C3B	C2B	C1B	H2B	180.0	179.5
C6B	C1B	C2B	N7	180.0	179.7
C2B	C1B	C6B	C5B	359.7	0.3
C2B	C1B	C6B	H6B	179.7	180.2
C2B	C1B	N7	C2	0.9	326.1
C2B	C1B	N7	HN7	235.6	146.2
H2B	C2B	C3B	C4B	180.1	180.1
C3B	C2B	H2B	C1B	180.0	180.5
H2B	C2B	C1B	C6B	180.1	179.9
H2B	C2B	C1B	N7	0.1	0.3
C6B	C1B	C2B	H2B	180.1	179.9
C2B	C1B	C6B	N7	180.0	180.3
C6B	C1B	N7	C2	180.9	146.4
C6B	C1B	N7	HN7	55.6	326.5
C5B	C6B	C1B	H6B	180.0	180.0
C1B	C6B	C5B	C4B	0.4	360.0
C1B	C6B	C5B	H5B	180.4	180.0
N7	C1B	C2B	H2B	0.1	0.3
C2B	C1B	N7	C6B	180.0	179.7
N7	C1B	C6B	C5B	179.7	180.0
N7	C1B	C6B	H6B	359.7	359.9
C2	N7	C1B	HN7	125.3	179.9
C1B	N7	C2	N1	164.6	354.6
C1B	N7	C2	N3	345.7	174.8
C3B	C4B	C5B	C6B	359.8	0.0
C5B	C6B	C1B	N7	179.7	180.0
C1B	C6B	C5B	H6B	180.0	180.0
C4B	C5B	C6B	H5B	180.0	180.0
C6B	C5B	C4B	H4B	179.8	179.9
H6B	C6B	C1B	N7	359.7	359.9
C1B	C6B	H6B	C5B	180.0	180.0
H6B	C6B	C5B	C4B	180.3	180.0
H6B	C6B	C5B	H5B	0.4	0.0
C3B	C4B	C5B	H4B	180.0	180.1
C4B	C5B	C6B	H6B	180.3	180.0
C6B	C5B	C4B	H5B	180.0	180.0
H5B	C5B	C6B	H6B	0.4	0.0
C6B	C5B	H5B	C4B	180.0	180.0
H5B	C5B	C4B	H4B	359.8	359.9
C3B	C4B	H4B	C5B	180.0	179.9
H4B	C4B	C5B	H5B	359.8	359.9
C1B	N7	C2	HN7	234.7	180.1
N1	C2	N7	N3	178.9	179.8
N7	C2	N1	C6	180.9	180.0
N7	C2	N3	C4	178.9	180.3
C1B	N7	HN7	C2	139.3	179.9
HN7	N7	C2	N1	289.9	174.4
HN7	N7	C2	N3	111.0	354.6
N1	C2	N7	HN7	289.9	174.4
N7	C2	N1	N3	181.1	180.2
N1	C2	N3	C4	0.1	0.5
C2	N1	C6	C5	0.3	360.0
C2	N1	C6	H6	180.3	180.0
N3	C2	N7	HN7	111.0	354.6
N7	C2	N3	N1	178.8	179.8
N3	C2	N1	C6	359.7	359.8
C2	N3	C4	C5	0.0	359.5
C2	N3	C4	C5A	181.1	179.8
C6	N1	C2	N3	359.7	359.8
C5	C6	N1	H6	180.0	180.0
N1	C6	C5	C4	359.9	0.0
N1	C6	C5	H5	179.9	180.1
N1	C6	C5	H6	180.0	180.0
N3	C4	C5	C6	360.0	0.3
C6	C5	C4	C5A	178.9	180.0
C4	C5	C6	H5	180.0	179.9
N1	C6	H6	C5	180.0	180.0
H6	C6	C5	C4	179.9	180.0
H6	C6	C5	H5	359.9	0.0
C6	C5	C4	N3	360.0	0.3
C5	C4	N3	C5A	179.0	179.7
N3	C4	C5	H5	180.0	180.2
N3	C4	C5A	C1A	198.1	359.8
N3	C4	C5A	S4A	18.6	179.7
C4	C5	C6	H6	179.9	180.0
C6	C5	C4	H5	180.0	180.1
N3	C4	C5	C5A	181.1	180.3
C5	C4	C5A	C1A	19.1	180.1
C5	C4	C5A	S4A	199.7	0.0
N3	C4	C5A	C5	178.9	179.7
C5A	C4	C5	H5	358.9	359.9
C1A	C5A	C4	S4A	179.5	180.1
C4	C5A	C1A	C6A	0.4	359.9
C4	C5A	C1A	N2A	180.5	179.7
C4	C5A	S4A	C3A	179.6	180.0
H5	C5	C6	H6	359.9	0.0
C6	C5	H5	C4	180.0	179.9
H5	C5	C4	C5A	358.9	359.9
C4	C5A	C1A	S4A	180.5	179.9
C1A	C5A	S4A	C3A	360.0	360.0
C6A	C1A	C5A	N2A	179.8	180.3
C5A	C1A	C6A	H6A1	54.7	90.1
C5A	C1A	C6A	H6A2	180.0	210.0
C5A	C1A	C6A	H6A3	305.2	330.1
C5A	C1A	N2A	C3A	360.0	0.6
C4	C5A	S4A	C1A	179.6	180.1
S4A	C5A	C1A	C6A	179.8	180.0
S4A	C5A	C1A	N2A	0.0	359.7
C5A	S4A	C3A	N2A	0.0	0.3
C5A	S4A	C3A	C7A	180.0	180.1
C6A	C1A	C5A	S4A	179.8	180.0
C5A	C1A	C6A	N2A	180.2	179.7
C6A	C1A	N2A	C3A	180.1	180.3
H6A1	C6A	C1A	H6A2	234.7	240.0
H6A1	C6A	C1A	H6A3	109.5	120.0
H6A2	C6A	C1A	H6A3	234.8	240.0
N2A	C1A	C5A	S4A	0.0	359.7
C5A	C1A	N2A	C6A	179.8	180.3
N2A	C1A	C6A	H6A1	234.5	270.3
N2A	C1A	C6A	H6A2	359.8	30.3
N2A	C1A	C6A	H6A3	125.1	150.3
S4A	C3A	N2A	C1A	0.0	359.5
C1A	N2A	C3A	C7A	180.0	179.7
H6A1	C6A	C1A	N2A	234.5	270.3
C1A	C6A	H6A1	H6A2	139.3	120.0
C1A	C6A	H6A1	H6A3	249.7	240.0
H6A2	C6A	H6A1	H6A3	110.3	120.1
H6A2	C6A	C1A	N2A	359.8	30.3
C1A	C6A	H6A2	H6A1	234.7	240.0
C1A	C6A	H6A2	H6A3	125.2	120.0
H6A1	C6A	H6A2	H6A3	250.5	239.9
H6A3	C6A	C1A	N2A	125.1	150.3
C1A	C6A	H6A3	H6A1	110.3	120.0
C1A	C6A	H6A3	H6A2	220.7	240.0
H6A1	C6A	H6A3	H6A2	110.4	120.1
C1A	N2A	C3A	S4A	0.0	359.5
N2A	C3A	S4A	C7A	180.0	180.2
S4A	C3A	C7A	H7A1	54.7	179.9
S4A	C3A	C7A	H7A2	180.0	299.9
S4A	C3A	C7A	H7A3	305.3	59.9
S4A	C3A	N2A	C7A	180.0	179.8
N2A	C3A	C7A	H7A1	234.8	359.7
N2A	C3A	C7A	H7A2	0.0	119.7
N2A	C3A	C7A	H7A3	125.3	239.7
S4A	C3A	C7A	N2A	180.0	180.2
H7A1	C7A	C3A	H7A2	234.7	240.0
H7A1	C7A	C3A	H7A3	109.5	120.0
H7A2	C7A	C3A	H7A3	234.8	240.0
C3A	C7A	H7A1	H7A2	131.3	120.0
C3A	C7A	H7A1	H7A3	245.6	240.0
H7A2	C7A	H7A1	H7A3	114.3	120.0
C3A	C7A	H7A2	H7A1	234.7	240.0
C3A	C7A	H7A2	H7A3	125.3	120.0
H7A1	C7A	H7A2	H7A3	250.5	240.0
C3A	C7A	H7A3	H7A1	114.3	120.1
C3A	C7A	H7A3	H7A2	228.7	240.1
H7A1	C7A	H7A3	H7A2	114.3	120.0