PDB Chemical Component CK3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CK3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7A |
C3A |
1.514 |
1.507 |
| C7A |
H7A1 |
1.114 |
1.090 |
| C7A |
H7A2 |
1.114 |
1.090 |
| C7A |
H7A3 |
1.115 |
1.090 |
| C3A |
S4A |
1.706 |
1.737 |
| C3A |
N2A |
1.332 |
1.315 |
| S4A |
C5A |
1.738 |
1.787 |
| N2A |
C1A |
1.376 |
1.312 |
| C1A |
C6A |
1.525 |
1.507 |
| C1A |
C5A |
1.395 |
1.373 |
| C6A |
H6A1 |
1.115 |
1.090 |
| C6A |
H6A2 |
1.115 |
1.090 |
| C6A |
H6A3 |
1.116 |
1.090 |
| C5A |
C4 |
1.432 |
1.476 |
| C4 |
N3 |
1.339 |
1.334 |
| C4 |
C5 |
1.420 |
1.402 |
| N3 |
C2 |
1.317 |
1.323 |
| C5 |
C6 |
1.409 |
1.381 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
N1 |
1.326 |
1.325 |
| C6 |
H6 |
1.104 |
1.080 |
| N1 |
C2 |
1.327 |
1.325 |
| C2 |
N7 |
1.435 |
1.387 |
| N7 |
C8 |
1.422 |
1.381 |
| N7 |
HN7 |
1.020 |
0.970 |
| C8 |
N9 |
1.268 |
1.291 |
| C8 |
H8 |
1.103 |
1.080 |
| N9 |
O10 |
1.313 |
1.417 |
| O10 |
H10 |
0.949 |
0.966 |
Bond Angles for CK3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3A |
C7A |
H7A1 |
120.1 |
109.5 |
| C3A |
C7A |
H7A2 |
108.4 |
109.5 |
| C3A |
C7A |
H7A3 |
108.4 |
109.5 |
| C7A |
C3A |
S4A |
120.1 |
128.8 |
| C7A |
C3A |
N2A |
124.1 |
128.9 |
| H7A1 |
C7A |
H7A2 |
108.5 |
109.4 |
| H7A1 |
C7A |
H7A3 |
108.4 |
109.5 |
| H7A2 |
C7A |
H7A3 |
101.6 |
109.4 |
| S4A |
C3A |
N2A |
115.8 |
102.4 |
| C3A |
S4A |
C5A |
89.9 |
97.4 |
| C3A |
N2A |
C1A |
109.9 |
121.7 |
| S4A |
C5A |
C1A |
108.7 |
100.6 |
| S4A |
C5A |
C4 |
116.5 |
129.7 |
| N2A |
C1A |
C6A |
116.9 |
121.0 |
| N2A |
C1A |
C5A |
115.7 |
118.0 |
| C6A |
C1A |
C5A |
127.5 |
121.0 |
| C1A |
C6A |
H6A1 |
116.9 |
109.5 |
| C1A |
C6A |
H6A2 |
109.6 |
109.5 |
| C1A |
C6A |
H6A3 |
109.5 |
109.5 |
| C1A |
C5A |
C4 |
134.7 |
129.7 |
| H6A1 |
C6A |
H6A2 |
109.5 |
109.4 |
| H6A1 |
C6A |
H6A3 |
109.5 |
109.5 |
| H6A2 |
C6A |
H6A3 |
100.6 |
109.5 |
| C5A |
C4 |
N3 |
118.7 |
120.6 |
| C5A |
C4 |
C5 |
122.6 |
120.5 |
| N3 |
C4 |
C5 |
118.7 |
118.9 |
| C4 |
N3 |
C2 |
119.4 |
120.6 |
| C4 |
C5 |
C6 |
117.6 |
118.4 |
| C4 |
C5 |
H5 |
121.6 |
120.8 |
| N3 |
C2 |
N1 |
125.7 |
121.8 |
| N3 |
C2 |
N7 |
113.9 |
119.1 |
| C6 |
C5 |
H5 |
120.8 |
120.8 |
| C5 |
C6 |
N1 |
120.9 |
119.4 |
| C5 |
C6 |
H6 |
122.6 |
120.3 |
| N1 |
C6 |
H6 |
116.5 |
120.3 |
| C6 |
N1 |
C2 |
117.8 |
121.0 |
| N1 |
C2 |
N7 |
120.4 |
119.1 |
| C2 |
N7 |
C8 |
129.1 |
120.0 |
| C2 |
N7 |
HN7 |
105.4 |
120.0 |
| C8 |
N7 |
HN7 |
105.3 |
120.0 |
| N7 |
C8 |
N9 |
121.7 |
120.0 |
| N7 |
C8 |
H8 |
125.0 |
120.0 |
| N9 |
C8 |
H8 |
113.3 |
120.0 |
| C8 |
N9 |
O10 |
128.6 |
120.0 |
| N9 |
O10 |
H10 |
128.6 |
106.9 |
Torsion Angles for CK3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H7A1 |
C7A |
C3A |
H7A2 |
234.7 |
240.0 |
| H7A1 |
C7A |
C3A |
H7A3 |
125.2 |
120.1 |
| H7A2 |
C7A |
C3A |
H7A3 |
250.5 |
240.0 |
| S4A |
C3A |
C7A |
N2A |
180.0 |
180.4 |
| C7A |
C3A |
S4A |
C5A |
179.7 |
180.0 |
| C7A |
C3A |
N2A |
C1A |
179.8 |
179.8 |
| C3A |
C7A |
H7A1 |
H7A2 |
125.3 |
120.0 |
| C3A |
C7A |
H7A1 |
H7A3 |
234.8 |
239.9 |
| H7A1 |
C7A |
C3A |
S4A |
180.0 |
90.0 |
| H7A1 |
C7A |
C3A |
N2A |
359.9 |
269.7 |
| H7A2 |
C7A |
H7A1 |
H7A3 |
109.5 |
119.9 |
| C3A |
C7A |
H7A2 |
H7A1 |
228.1 |
240.0 |
| C3A |
C7A |
H7A2 |
H7A3 |
114.1 |
120.0 |
| H7A2 |
C7A |
C3A |
S4A |
305.3 |
210.0 |
| H7A2 |
C7A |
C3A |
N2A |
125.2 |
29.7 |
| H7A1 |
C7A |
H7A2 |
H7A3 |
246.0 |
240.0 |
| C3A |
C7A |
H7A3 |
H7A1 |
131.8 |
120.1 |
| C3A |
C7A |
H7A3 |
H7A2 |
245.9 |
240.0 |
| H7A3 |
C7A |
C3A |
S4A |
54.8 |
330.0 |
| H7A3 |
C7A |
C3A |
N2A |
234.7 |
149.6 |
| H7A1 |
C7A |
H7A3 |
H7A2 |
114.1 |
119.9 |
| S4A |
C3A |
C7A |
H7A1 |
180.0 |
90.0 |
| S4A |
C3A |
C7A |
H7A2 |
305.3 |
210.0 |
| S4A |
C3A |
C7A |
H7A3 |
54.8 |
330.0 |
| C7A |
C3A |
S4A |
N2A |
180.0 |
179.7 |
| S4A |
C3A |
N2A |
C1A |
359.8 |
359.5 |
| C3A |
S4A |
C5A |
C1A |
0.7 |
360.0 |
| C3A |
S4A |
C5A |
C4 |
178.6 |
180.0 |
| N2A |
C3A |
C7A |
H7A1 |
359.9 |
269.7 |
| N2A |
C3A |
C7A |
H7A2 |
125.2 |
29.7 |
| N2A |
C3A |
C7A |
H7A3 |
234.7 |
149.6 |
| C7A |
C3A |
N2A |
S4A |
180.0 |
180.3 |
| N2A |
C3A |
S4A |
C5A |
359.7 |
0.3 |
| C3A |
N2A |
C1A |
C6A |
179.8 |
180.3 |
| C3A |
N2A |
C1A |
C5A |
0.8 |
0.6 |
| C5A |
S4A |
C3A |
N2A |
359.7 |
0.3 |
| N2A |
C1A |
C5A |
S4A |
359.0 |
359.7 |
| C6A |
C1A |
C5A |
S4A |
180.1 |
180.0 |
| C1A |
C5A |
S4A |
C4 |
182.1 |
180.0 |
| S4A |
C5A |
C4 |
N3 |
12.1 |
179.8 |
| S4A |
C5A |
C4 |
C5 |
191.8 |
0.0 |
| S4A |
C5A |
C1A |
N2A |
359.0 |
359.7 |
| C6A |
C1A |
N2A |
C5A |
179.0 |
179.7 |
| N2A |
C1A |
C6A |
H6A1 |
180.0 |
270.3 |
| N2A |
C1A |
C6A |
H6A2 |
305.3 |
30.2 |
| N2A |
C1A |
C6A |
H6A3 |
54.8 |
150.3 |
| N2A |
C1A |
C5A |
C4 |
181.6 |
179.8 |
| S4A |
C5A |
C1A |
C6A |
180.1 |
180.0 |
| N2A |
C1A |
C6A |
C5A |
181.1 |
180.3 |
| C6A |
C1A |
C5A |
C4 |
2.7 |
0.0 |
| H6A1 |
C6A |
C1A |
H6A2 |
234.7 |
240.0 |
| H6A1 |
C6A |
C1A |
H6A3 |
125.2 |
120.0 |
| H6A2 |
C6A |
C1A |
H6A3 |
250.5 |
240.0 |
| S4A |
C5A |
C1A |
C4 |
177.4 |
180.0 |
| N2A |
C1A |
C5A |
C6A |
178.9 |
179.7 |
| C5A |
C1A |
C6A |
H6A1 |
358.8 |
90.0 |
| C5A |
C1A |
C6A |
H6A2 |
124.1 |
210.0 |
| C5A |
C1A |
C6A |
H6A3 |
233.6 |
330.0 |
| C1A |
C5A |
C4 |
N3 |
189.3 |
359.7 |
| C1A |
C5A |
C4 |
C5 |
9.1 |
180.0 |
| H6A1 |
C6A |
C1A |
C5A |
358.8 |
90.0 |
| C1A |
C6A |
H6A1 |
H6A2 |
125.3 |
120.0 |
| C1A |
C6A |
H6A1 |
H6A3 |
234.8 |
240.0 |
| H6A2 |
C6A |
H6A1 |
H6A3 |
109.5 |
120.0 |
| H6A2 |
C6A |
C1A |
C5A |
124.1 |
210.0 |
| C1A |
C6A |
H6A2 |
H6A1 |
230.6 |
240.0 |
| C1A |
C6A |
H6A2 |
H6A3 |
115.3 |
120.0 |
| H6A1 |
C6A |
H6A2 |
H6A3 |
244.7 |
240.0 |
| H6A3 |
C6A |
C1A |
C5A |
233.6 |
330.0 |
| C1A |
C6A |
H6A3 |
H6A1 |
129.4 |
120.0 |
| C1A |
C6A |
H6A3 |
H6A2 |
244.7 |
240.0 |
| H6A1 |
C6A |
H6A3 |
H6A2 |
115.3 |
120.0 |
| S4A |
C5A |
C4 |
C1A |
182.8 |
180.0 |
| N3 |
C4 |
C5A |
C5 |
180.2 |
179.7 |
| C5A |
C4 |
N3 |
C2 |
179.5 |
179.7 |
| C5A |
C4 |
C5 |
C6 |
179.3 |
180.0 |
| C5A |
C4 |
C5 |
H5 |
359.3 |
360.0 |
| C5A |
C4 |
N3 |
C5 |
179.8 |
180.3 |
| N3 |
C4 |
C5 |
C6 |
359.1 |
0.3 |
| N3 |
C4 |
C5 |
H5 |
179.1 |
180.2 |
| C4 |
N3 |
C2 |
N1 |
1.8 |
0.6 |
| C4 |
N3 |
C2 |
N7 |
179.5 |
180.3 |
| C5A |
C4 |
C5 |
N3 |
180.2 |
179.7 |
| C5 |
C4 |
N3 |
C2 |
359.8 |
359.5 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
0.7 |
360.0 |
| C4 |
C5 |
C6 |
H6 |
180.7 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.8 |
359.5 |
| C6 |
N1 |
C2 |
N3 |
358.0 |
359.7 |
| N1 |
C2 |
N3 |
N7 |
182.3 |
180.3 |
| N3 |
C2 |
N7 |
C8 |
304.5 |
175.2 |
| N3 |
C2 |
N7 |
HN7 |
179.2 |
355.1 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
179.9 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
0.7 |
0.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
N1 |
180.7 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.7 |
0.0 |
| N3 |
C2 |
N1 |
C6 |
358.0 |
359.7 |
| N1 |
C6 |
C5 |
H5 |
180.7 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| C6 |
N1 |
C2 |
N7 |
180.5 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.7 |
0.0 |
| C5 |
C6 |
H6 |
N1 |
179.9 |
180.0 |
| H6 |
C6 |
N1 |
C2 |
180.6 |
180.1 |
| N3 |
C2 |
N1 |
N7 |
177.5 |
179.7 |
| C2 |
N1 |
C6 |
H6 |
180.6 |
180.1 |
| N1 |
C2 |
N7 |
C8 |
122.3 |
354.9 |
| N1 |
C2 |
N7 |
HN7 |
357.1 |
174.8 |
| N3 |
C2 |
N7 |
N1 |
182.2 |
180.3 |
| C8 |
N7 |
C2 |
HN7 |
125.2 |
180.0 |
| C2 |
N7 |
C8 |
N9 |
180.3 |
185.1 |
| C2 |
N7 |
C8 |
H8 |
0.3 |
5.1 |
| C2 |
N7 |
C8 |
HN7 |
234.8 |
180.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N7 |
C8 |
N9 |
O10 |
0.4 |
5.1 |
| C2 |
N7 |
HN7 |
C8 |
138.9 |
180.0 |
| HN7 |
N7 |
C8 |
N9 |
305.5 |
5.1 |
| HN7 |
N7 |
C8 |
H8 |
125.5 |
185.2 |
| N9 |
C8 |
N7 |
HN7 |
305.5 |
5.1 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| C8 |
N9 |
O10 |
H10 |
180.0 |
180.0 |
| H8 |
C8 |
N7 |
HN7 |
125.5 |
185.2 |
| N7 |
C8 |
H8 |
N9 |
180.0 |
180.0 |
| H8 |
C8 |
N9 |
O10 |
180.4 |
185.1 |
| O10 |
N9 |
C8 |
H8 |
180.4 |
185.1 |