PDB Chemical Component CJ1

Ideal Model

Chemical Description

Name 7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-2,4-diol
Formula C11 H14 N3 O8 P
Formal charge 0
Molecular weight 347.218 g/mol
Component type DNA linking

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 39
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-2,4-diol
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2ccc3c(O)nc(O)nc23
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2ccc3c(O)nc(O)nc23
Stereo SMILES (OpenEye) c1cn(c2c1c(nc(n2)O)O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H14N3O8P/c15-6-3-8(22-7(6)4-21-23(18,19)20)14-2-1-5-9(14)12-11(17)13-10(5)16/h1-2,6-8,15H,3-4H2,(H2,18,19,20)(H2,12,13,16,17)/t6-,7+,8+/m0/s1
InChIKey descriptor KGLSEDQJBHBOAW-XLPZGREQSA-N

Status Information

Last modified 2018-09-14
Created 2017-09-22
Release status REL
Model PDB code 6B1Q
Processing site RCSB