PDB Chemical Component CIY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CIY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C6 |
C1 |
1.448 |
1.400 |
| C2 |
C1 |
1.422 |
1.401 |
| C1 |
C7 |
1.472 |
1.468 |
| C3 |
C2 |
1.410 |
1.380 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
C3 |
1.502 |
1.395 |
| O3 |
C3 |
1.355 |
1.361 |
| O3 |
C3M |
1.445 |
1.429 |
| O4 |
C4 |
1.352 |
1.358 |
| C4 |
C5 |
1.446 |
1.389 |
| O4 |
HO4 |
0.950 |
0.966 |
| C5 |
C6 |
1.439 |
1.377 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.308 |
1.355 |
| C7 |
H7 |
1.080 |
1.079 |
| C8 |
C9 |
1.434 |
1.408 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
O9 |
1.214 |
1.214 |
| C9 |
H9 |
1.080 |
1.080 |
| C3M |
H3M |
1.100 |
1.090 |
| C3M |
H3MA |
1.100 |
1.090 |
| C3M |
H3MB |
1.100 |
1.090 |
Bond Angles for CIY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C7 |
123.0 |
120.1 |
| C2 |
C1 |
C7 |
116.1 |
120.1 |
| C1 |
C7 |
C8 |
122.7 |
120.0 |
| C1 |
C7 |
H7 |
118.6 |
120.0 |
| C3 |
C2 |
H2 |
119.5 |
120.1 |
| O3 |
C3M |
H3M |
109.5 |
109.5 |
| O3 |
C3M |
H3MA |
109.5 |
109.5 |
| O3 |
C3M |
H3MB |
109.5 |
109.5 |
| O4 |
C4 |
C5 |
122.7 |
119.9 |
| C4 |
C5 |
C6 |
120.6 |
120.2 |
| C4 |
C5 |
H5 |
119.7 |
119.9 |
| C6 |
C5 |
H5 |
119.7 |
119.9 |
| C5 |
C6 |
H6 |
120.2 |
120.0 |
| C8 |
C7 |
H7 |
118.6 |
120.0 |
| C7 |
C8 |
C9 |
116.6 |
120.0 |
| C7 |
C8 |
H8 |
121.7 |
120.0 |
| C9 |
C8 |
H8 |
121.7 |
120.0 |
| C8 |
C9 |
O9 |
119.6 |
120.0 |
| C8 |
C9 |
H9 |
120.2 |
120.0 |
| O9 |
C9 |
H9 |
120.2 |
120.0 |
| H3M |
C3M |
H3MA |
109.5 |
109.5 |
| H3M |
C3M |
H3MB |
109.5 |
109.5 |
| H3MA |
C3M |
H3MB |
109.5 |
109.4 |
Torsion Angles for CIY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
C7 |
180.6 |
179.7 |
| C6 |
C1 |
C7 |
C8 |
7.1 |
359.7 |
| C6 |
C1 |
C7 |
H7 |
187.1 |
179.7 |
| C6 |
C1 |
C2 |
C7 |
179.5 |
180.3 |
| C2 |
C1 |
C7 |
C8 |
186.6 |
180.0 |
| C2 |
C1 |
C7 |
H7 |
6.6 |
360.0 |
| C8 |
C7 |
C1 |
H7 |
180.0 |
180.0 |
| C1 |
C7 |
C8 |
C9 |
181.2 |
180.0 |
| C1 |
C7 |
C8 |
H8 |
1.3 |
360.0 |
| C3 |
C2 |
C1 |
C7 |
180.5 |
180.0 |
| H2 |
C2 |
C1 |
C7 |
0.5 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.8 |
180.1 |
| O3 |
C3 |
C2 |
H2 |
0.9 |
0.0 |
| H3M |
C3M |
O3 |
H3MA |
240.0 |
240.0 |
| H3M |
C3M |
O3 |
H3MB |
120.0 |
120.1 |
| H3MA |
C3M |
O3 |
H3MB |
240.0 |
240.1 |
| O4 |
C4 |
C5 |
C6 |
180.1 |
179.7 |
| O4 |
C4 |
C5 |
H5 |
0.1 |
0.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
H6 |
179.6 |
180.0 |
| HO4 |
O4 |
C4 |
C5 |
1.0 |
270.1 |
| C5 |
C6 |
C1 |
C7 |
179.2 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
| H5 |
C5 |
C6 |
H6 |
359.6 |
359.7 |
| H6 |
C6 |
C1 |
C7 |
359.2 |
0.3 |
| H6 |
C6 |
C5 |
H5 |
359.6 |
359.7 |
| C1 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
O9 |
180.3 |
180.0 |
| C7 |
C8 |
C9 |
H9 |
0.3 |
360.0 |
| C1 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C9 |
1.2 |
0.0 |
| H7 |
C7 |
C8 |
H8 |
181.3 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
1.2 |
0.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| O9 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
181.3 |
180.0 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
C9 |
O9 |
0.3 |
360.0 |
| H8 |
C8 |
C9 |
H9 |
180.3 |
180.0 |
| O9 |
C9 |
C8 |
H8 |
0.3 |
360.0 |
| C8 |
C9 |
O9 |
H9 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
180.3 |
180.0 |
| C8 |
C9 |
H9 |
O9 |
180.0 |
180.0 |
| O3 |
C3M |
H3M |
H3MA |
120.0 |
120.0 |
| O3 |
C3M |
H3M |
H3MB |
240.0 |
240.0 |
| H3MA |
C3M |
H3M |
H3MB |
120.0 |
119.9 |
| O3 |
C3M |
H3MA |
H3M |
240.0 |
239.9 |
| O3 |
C3M |
H3MA |
H3MB |
120.0 |
120.0 |
| H3M |
C3M |
H3MA |
H3MB |
240.0 |
240.0 |
| O3 |
C3M |
H3MB |
H3M |
120.0 |
120.1 |
| O3 |
C3M |
H3MB |
H3MA |
240.0 |
240.0 |
| H3M |
C3M |
H3MB |
H3MA |
120.0 |
120.0 |