PDB Chemical Component CIE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for CIE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.471 |
1.395 |
| C1 |
C6 |
1.485 |
1.396 |
| C1 |
C7 |
1.521 |
1.476 |
| C2 |
C3 |
1.467 |
1.380 |
| C2 |
S11 |
1.800 |
1.763 |
| C3 |
C4 |
1.451 |
1.382 |
| C3 |
H3 |
1.102 |
1.081 |
| C4 |
C5 |
1.448 |
1.385 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.456 |
1.379 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.081 |
| C7 |
O7 |
1.217 |
1.214 |
| C7 |
O8 |
1.429 |
1.347 |
| O8 |
C9 |
1.447 |
1.452 |
| C9 |
C10 |
1.517 |
1.530 |
| C9 |
H91 |
1.115 |
1.090 |
| C9 |
H92 |
1.115 |
1.090 |
| C10 |
H101 |
1.116 |
1.091 |
| C10 |
H102 |
1.114 |
1.090 |
| C10 |
H103 |
1.115 |
1.090 |
| S11 |
OBA |
1.604 |
1.421 |
| S11 |
OBB |
1.505 |
1.421 |
| S11 |
N12 |
1.722 |
1.656 |
| N12 |
C13 |
1.333 |
1.347 |
| N12 |
H12 |
1.020 |
0.969 |
| C13 |
O13 |
1.236 |
1.214 |
| C13 |
N14 |
1.324 |
1.348 |
| N14 |
C2' |
1.311 |
1.389 |
| N14 |
H14 |
1.020 |
0.970 |
| N1' |
C2' |
1.343 |
1.324 |
| N1' |
C6' |
1.347 |
1.328 |
| C2' |
N3' |
1.373 |
1.323 |
| N3' |
C4' |
1.397 |
1.325 |
| C4' |
CL4' |
1.760 |
1.736 |
| C4' |
C5' |
1.454 |
1.384 |
| C5' |
C6' |
1.477 |
1.392 |
| C5' |
H5' |
1.104 |
1.080 |
| C6' |
O7' |
1.365 |
1.355 |
| O7' |
C8' |
1.391 |
1.429 |
| C8' |
H8'1 |
1.115 |
1.089 |
| C8' |
H8'2 |
1.116 |
1.089 |
| C8' |
H8'3 |
1.115 |
1.090 |
Bond Angles for CIE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
116.9 |
119.7 |
| C2 |
C1 |
C7 |
115.3 |
120.2 |
| C1 |
C2 |
C3 |
121.3 |
119.9 |
| C1 |
C2 |
S11 |
130.9 |
120.1 |
| C6 |
C1 |
C7 |
127.9 |
120.2 |
| C1 |
C6 |
C5 |
121.8 |
119.9 |
| C1 |
C6 |
H6 |
120.1 |
120.1 |
| C1 |
C7 |
O7 |
115.8 |
120.0 |
| C1 |
C7 |
O8 |
105.7 |
120.0 |
| C3 |
C2 |
S11 |
107.7 |
120.1 |
| C2 |
C3 |
C4 |
119.8 |
120.2 |
| C2 |
C3 |
H3 |
120.6 |
119.9 |
| C2 |
S11 |
OBA |
109.7 |
105.7 |
| C2 |
S11 |
OBB |
107.2 |
105.8 |
| C2 |
S11 |
N12 |
105.3 |
107.4 |
| C4 |
C3 |
H3 |
119.6 |
119.9 |
| C3 |
C4 |
C5 |
120.6 |
120.3 |
| C3 |
C4 |
H4 |
119.8 |
119.9 |
| C5 |
C4 |
H4 |
119.6 |
119.8 |
| C4 |
C5 |
C6 |
119.6 |
120.1 |
| C4 |
C5 |
H5 |
120.0 |
119.9 |
| C6 |
C5 |
H5 |
120.4 |
120.0 |
| C5 |
C6 |
H6 |
118.2 |
120.0 |
| O7 |
C7 |
O8 |
113.8 |
119.9 |
| C7 |
O8 |
C9 |
114.0 |
120.0 |
| O8 |
C9 |
C10 |
109.8 |
109.4 |
| O8 |
C9 |
H91 |
112.2 |
109.5 |
| O8 |
C9 |
H92 |
112.1 |
109.4 |
| C10 |
C9 |
H91 |
112.1 |
109.5 |
| C10 |
C9 |
H92 |
112.1 |
109.5 |
| C9 |
C10 |
H101 |
109.8 |
109.4 |
| C9 |
C10 |
H102 |
112.1 |
109.5 |
| C9 |
C10 |
H103 |
112.1 |
109.5 |
| H91 |
C9 |
H92 |
98.3 |
109.5 |
| H101 |
C10 |
H102 |
112.1 |
109.5 |
| H101 |
C10 |
H103 |
112.1 |
109.5 |
| H102 |
C10 |
H103 |
98.4 |
109.5 |
| OBA |
S11 |
OBB |
125.5 |
125.4 |
| OBA |
S11 |
N12 |
108.6 |
105.8 |
| OBB |
S11 |
N12 |
98.3 |
105.8 |
| S11 |
N12 |
C13 |
124.1 |
120.0 |
| S11 |
N12 |
H12 |
107.1 |
120.0 |
| C13 |
N12 |
H12 |
107.0 |
120.1 |
| N12 |
C13 |
O13 |
120.5 |
120.1 |
| N12 |
C13 |
N14 |
118.5 |
119.9 |
| O13 |
C13 |
N14 |
120.9 |
120.0 |
| C13 |
N14 |
C2' |
141.5 |
120.0 |
| C13 |
N14 |
H14 |
110.1 |
120.0 |
| C2' |
N14 |
H14 |
108.4 |
120.0 |
| N14 |
C2' |
N1' |
113.4 |
119.2 |
| N14 |
C2' |
N3' |
122.5 |
119.2 |
| C2' |
N1' |
C6' |
120.3 |
120.7 |
| N1' |
C2' |
N3' |
124.1 |
121.7 |
| N1' |
C6' |
C5' |
121.8 |
119.1 |
| N1' |
C6' |
O7' |
120.2 |
120.4 |
| C2' |
N3' |
C4' |
118.1 |
120.9 |
| N3' |
C4' |
CL4' |
119.4 |
120.4 |
| N3' |
C4' |
C5' |
121.6 |
119.2 |
| CL4' |
C4' |
C5' |
119.1 |
120.4 |
| C4' |
C5' |
C6' |
114.1 |
118.5 |
| C4' |
C5' |
H5' |
122.2 |
120.8 |
| C6' |
C5' |
H5' |
123.6 |
120.7 |
| C5' |
C6' |
O7' |
118.0 |
120.5 |
| C6' |
O7' |
C8' |
145.7 |
106.8 |
| O7' |
C8' |
H8'1 |
145.7 |
109.5 |
| O7' |
C8' |
H8'2 |
100.1 |
109.5 |
| O7' |
C8' |
H8'3 |
100.1 |
109.4 |
| H8'1 |
C8' |
H8'2 |
100.1 |
109.5 |
| H8'1 |
C8' |
H8'3 |
100.1 |
109.5 |
| H8'2 |
C8' |
H8'3 |
107.0 |
109.5 |
Torsion Angles for CIE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
179.9 |
179.7 |
| C2 |
C1 |
C6 |
C5 |
359.9 |
0.3 |
| C2 |
C1 |
C6 |
H6 |
179.8 |
180.2 |
| C2 |
C1 |
C7 |
O7 |
109.7 |
5.9 |
| C2 |
C1 |
C7 |
O8 |
236.6 |
185.9 |
| C3 |
C2 |
C1 |
S11 |
179.9 |
179.4 |
| C1 |
C2 |
C3 |
C4 |
359.9 |
0.6 |
| C1 |
C2 |
C3 |
H3 |
179.9 |
180.3 |
| C1 |
C2 |
S11 |
OBA |
148.0 |
52.6 |
| C1 |
C2 |
S11 |
OBB |
287.3 |
187.4 |
| C1 |
C2 |
S11 |
N12 |
31.3 |
300.0 |
| C2 |
C1 |
C6 |
C7 |
180.1 |
180.3 |
| C6 |
C1 |
C2 |
C3 |
0.2 |
359.4 |
| C6 |
C1 |
C2 |
S11 |
180.2 |
180.0 |
| C6 |
C1 |
C7 |
O7 |
289.8 |
186.2 |
| C6 |
C1 |
C7 |
O8 |
56.7 |
6.2 |
| C4 |
C5 |
C6 |
C1 |
0.0 |
0.0 |
| C1 |
C6 |
C5 |
H5 |
180.0 |
179.9 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
C7 |
C6 |
179.9 |
179.7 |
| C7 |
C1 |
C2 |
C3 |
180.2 |
179.7 |
| C7 |
C1 |
C2 |
S11 |
0.3 |
0.3 |
| C7 |
C1 |
C6 |
C5 |
179.8 |
180.0 |
| C7 |
C1 |
C6 |
H6 |
359.7 |
359.9 |
| O7 |
C7 |
C1 |
O8 |
233.1 |
180.0 |
| C1 |
C7 |
O8 |
C9 |
167.6 |
185.2 |
| C3 |
C2 |
C1 |
C6 |
0.2 |
359.4 |
| C3 |
C2 |
C1 |
C7 |
180.2 |
179.7 |
| C1 |
C2 |
C3 |
S11 |
180.1 |
180.6 |
| C3 |
C2 |
S11 |
OBA |
328.1 |
233.1 |
| C3 |
C2 |
S11 |
OBB |
107.4 |
8.0 |
| C3 |
C2 |
S11 |
N12 |
211.4 |
120.5 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.3 |
| C2 |
C3 |
C4 |
C5 |
360.0 |
359.7 |
| C2 |
C3 |
C4 |
H4 |
179.9 |
179.7 |
| S11 |
C2 |
C1 |
C6 |
180.2 |
180.0 |
| S11 |
C2 |
C1 |
C7 |
0.3 |
0.3 |
| C1 |
C2 |
S11 |
C3 |
179.9 |
179.4 |
| S11 |
C2 |
C3 |
C4 |
179.9 |
180.0 |
| S11 |
C2 |
C3 |
H3 |
359.8 |
359.7 |
| OBA |
S11 |
C2 |
OBB |
220.7 |
225.2 |
| OBA |
S11 |
C2 |
N12 |
116.7 |
112.6 |
| OBB |
S11 |
C2 |
N12 |
256.0 |
247.4 |
| C2 |
S11 |
N12 |
C13 |
67.6 |
295.7 |
| C2 |
S11 |
N12 |
H12 |
302.3 |
115.7 |
| C4 |
C3 |
C2 |
S11 |
179.9 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.7 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.0 |
360.0 |
| C3 |
C4 |
C5 |
H5 |
180.0 |
180.1 |
| H3 |
C3 |
C2 |
S11 |
359.8 |
359.7 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.3 |
| H3 |
C3 |
C4 |
C5 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
H4 |
360.0 |
0.0 |
| C1 |
C6 |
C5 |
C4 |
0.0 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
180.1 |
180.1 |
| H4 |
C4 |
C3 |
H3 |
360.0 |
0.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.1 |
180.0 |
| H4 |
C4 |
C5 |
H5 |
0.1 |
0.1 |
| C5 |
C6 |
C1 |
C7 |
179.8 |
180.0 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| H5 |
C5 |
C4 |
H4 |
0.1 |
0.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.9 |
| H5 |
C5 |
C6 |
H6 |
0.1 |
360.0 |
| H6 |
C6 |
C1 |
C7 |
359.7 |
359.9 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.1 |
360.0 |
| C1 |
C7 |
O7 |
O8 |
122.7 |
180.0 |
| O7 |
C7 |
O8 |
C9 |
295.7 |
5.2 |
| C1 |
C7 |
O8 |
O7 |
231.9 |
180.0 |
| C7 |
O8 |
C9 |
C10 |
180.7 |
184.8 |
| C7 |
O8 |
C9 |
H91 |
305.9 |
64.8 |
| C7 |
O8 |
C9 |
H92 |
55.4 |
304.8 |
| C10 |
C9 |
O8 |
H91 |
234.7 |
120.0 |
| C10 |
C9 |
O8 |
H92 |
125.3 |
240.0 |
| O8 |
C9 |
C10 |
H101 |
180.0 |
175.0 |
| O8 |
C9 |
C10 |
H102 |
305.2 |
295.0 |
| O8 |
C9 |
C10 |
H103 |
54.8 |
55.1 |
| H91 |
C9 |
O8 |
H92 |
250.5 |
120.0 |
| O8 |
C9 |
C10 |
H91 |
125.3 |
240.0 |
| O8 |
C9 |
C10 |
H92 |
234.7 |
119.9 |
| H91 |
C9 |
C10 |
H92 |
109.4 |
240.0 |
| H101 |
C10 |
C9 |
H102 |
234.8 |
240.0 |
| H101 |
C10 |
C9 |
H103 |
125.2 |
120.0 |
| H102 |
C10 |
C9 |
H103 |
250.5 |
239.9 |
| O8 |
C9 |
H91 |
C10 |
236.0 |
120.0 |
| O8 |
C9 |
H91 |
H92 |
118.0 |
240.0 |
| C10 |
C9 |
H91 |
H92 |
242.1 |
120.0 |
| H91 |
C9 |
C10 |
H101 |
54.7 |
295.0 |
| H91 |
C9 |
C10 |
H102 |
179.9 |
55.0 |
| H91 |
C9 |
C10 |
H103 |
289.5 |
175.1 |
| O8 |
C9 |
H92 |
C10 |
124.0 |
240.1 |
| O8 |
C9 |
H92 |
H91 |
241.9 |
120.0 |
| C10 |
C9 |
H92 |
H91 |
118.0 |
239.9 |
| H92 |
C9 |
C10 |
H101 |
305.3 |
55.1 |
| H92 |
C9 |
C10 |
H102 |
70.5 |
175.0 |
| H92 |
C9 |
C10 |
H103 |
180.1 |
295.1 |
| H101 |
C10 |
C9 |
H91 |
54.7 |
295.0 |
| H101 |
C10 |
C9 |
H92 |
305.3 |
55.1 |
| C9 |
C10 |
H101 |
H102 |
125.2 |
120.0 |
| C9 |
C10 |
H101 |
H103 |
234.7 |
240.0 |
| H102 |
C10 |
H101 |
H103 |
109.5 |
120.0 |
| H102 |
C10 |
C9 |
H91 |
179.9 |
55.0 |
| H102 |
C10 |
C9 |
H92 |
70.5 |
175.0 |
| C9 |
C10 |
H102 |
H101 |
236.0 |
240.1 |
| C9 |
C10 |
H102 |
H103 |
118.1 |
120.1 |
| H101 |
C10 |
H102 |
H103 |
242.0 |
240.0 |
| H103 |
C10 |
C9 |
H91 |
289.5 |
175.1 |
| H103 |
C10 |
C9 |
H92 |
180.1 |
295.1 |
| C9 |
C10 |
H103 |
H101 |
124.0 |
119.9 |
| C9 |
C10 |
H103 |
H102 |
242.0 |
239.9 |
| H101 |
C10 |
H103 |
H102 |
118.0 |
120.0 |
| C2 |
S11 |
OBA |
OBB |
130.0 |
123.1 |
| C2 |
S11 |
OBA |
N12 |
245.3 |
246.3 |
| OBB |
S11 |
OBA |
N12 |
115.3 |
123.2 |
| OBA |
S11 |
N12 |
C13 |
310.1 |
183.1 |
| OBA |
S11 |
N12 |
H12 |
184.8 |
3.1 |
| C2 |
S11 |
OBB |
OBA |
229.0 |
236.9 |
| C2 |
S11 |
OBB |
N12 |
109.0 |
113.7 |
| OBA |
S11 |
OBB |
N12 |
240.0 |
236.8 |
| OBB |
S11 |
N12 |
C13 |
178.1 |
48.3 |
| OBB |
S11 |
N12 |
H12 |
52.8 |
228.3 |
| C2 |
S11 |
N12 |
OBA |
117.5 |
112.6 |
| C2 |
S11 |
N12 |
OBB |
249.5 |
247.4 |
| OBA |
S11 |
N12 |
OBB |
132.0 |
134.8 |
| C13 |
N12 |
S11 |
H12 |
125.3 |
180.0 |
| S11 |
N12 |
C13 |
O13 |
359.9 |
5.3 |
| S11 |
N12 |
C13 |
N14 |
180.6 |
185.4 |
| S11 |
N12 |
C13 |
H12 |
234.7 |
180.0 |
| O13 |
C13 |
N12 |
N14 |
179.2 |
180.0 |
| N12 |
C13 |
N14 |
C2' |
178.3 |
186.3 |
| N12 |
C13 |
N14 |
H14 |
358.3 |
6.3 |
| S11 |
N12 |
H12 |
C13 |
135.0 |
180.0 |
| H12 |
N12 |
C13 |
O13 |
125.2 |
185.4 |
| H12 |
N12 |
C13 |
N14 |
305.9 |
5.4 |
| O13 |
C13 |
N12 |
H12 |
125.2 |
185.4 |
| N12 |
C13 |
O13 |
N14 |
180.8 |
180.0 |
| O13 |
C13 |
N14 |
C2' |
359.1 |
6.3 |
| O13 |
C13 |
N14 |
H14 |
179.1 |
186.4 |
| N14 |
C13 |
N12 |
H12 |
305.9 |
5.4 |
| N12 |
C13 |
N14 |
O13 |
179.2 |
180.0 |
| C2' |
N14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
N14 |
C2' |
N1' |
359.7 |
185.7 |
| C13 |
N14 |
C2' |
N3' |
179.7 |
5.9 |
| C13 |
N14 |
C2' |
H14 |
180.0 |
180.0 |
| N14 |
C2' |
N1' |
C6' |
180.2 |
179.7 |
| N1' |
C2' |
N14 |
N3' |
180.0 |
179.8 |
| N14 |
C2' |
N3' |
C4' |
179.7 |
180.0 |
| C13 |
N14 |
H14 |
C2' |
180.0 |
180.0 |
| H14 |
N14 |
C2' |
N1' |
179.7 |
5.7 |
| H14 |
N14 |
C2' |
N3' |
359.8 |
185.9 |
| N1' |
C2' |
N14 |
H14 |
179.7 |
5.7 |
| N14 |
C2' |
N1' |
N3' |
180.0 |
180.2 |
| C2' |
N1' |
C6' |
C5' |
359.8 |
0.6 |
| C2' |
N1' |
C6' |
O7' |
180.1 |
180.3 |
| N1' |
C2' |
N3' |
C4' |
359.8 |
0.2 |
| C6' |
N1' |
C2' |
N3' |
0.2 |
359.4 |
| C4' |
C5' |
C6' |
N1' |
0.1 |
359.7 |
| N1' |
C6' |
C5' |
H5' |
180.1 |
179.7 |
| C5' |
C6' |
N1' |
O7' |
179.8 |
180.3 |
| N1' |
C6' |
O7' |
C8' |
179.6 |
0.3 |
| N3' |
C2' |
N14 |
H14 |
359.8 |
185.9 |
| N14 |
C2' |
N3' |
N1' |
180.0 |
179.8 |
| N3' |
C2' |
N1' |
C6' |
0.2 |
359.4 |
| C2' |
N3' |
C4' |
CL4' |
180.3 |
180.0 |
| C2' |
N3' |
C4' |
C5' |
0.2 |
0.0 |
| CL4' |
C4' |
N3' |
C5' |
180.1 |
180.0 |
| N3' |
C4' |
C5' |
C6' |
359.9 |
0.0 |
| N3' |
C4' |
C5' |
H5' |
179.9 |
180.0 |
| N3' |
C4' |
CL4' |
C5' |
179.9 |
180.0 |
| CL4' |
C4' |
C5' |
C6' |
179.8 |
180.0 |
| CL4' |
C4' |
C5' |
H5' |
359.8 |
360.0 |
| N1' |
C6' |
C5' |
C4' |
0.1 |
359.7 |
| N3' |
C4' |
C5' |
CL4' |
180.1 |
180.0 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
O7' |
179.9 |
180.0 |
| N1' |
C6' |
C5' |
O7' |
180.2 |
179.7 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.0 |
| C5' |
C6' |
O7' |
C8' |
359.8 |
179.9 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
180.0 |
| H5' |
C5' |
C6' |
O7' |
359.9 |
0.0 |
| N1' |
C6' |
O7' |
C5' |
179.8 |
180.3 |
| O7' |
C6' |
C5' |
H5' |
359.9 |
0.0 |
| C6' |
O7' |
C8' |
H8'1 |
180.0 |
180.0 |
| C6' |
O7' |
C8' |
H8'2 |
305.3 |
300.1 |
| C6' |
O7' |
C8' |
H8'3 |
54.7 |
60.0 |
| H8'1 |
C8' |
O7' |
H8'2 |
234.8 |
239.9 |
| H8'1 |
C8' |
O7' |
H8'3 |
125.3 |
119.9 |
| H8'2 |
C8' |
O7' |
H8'3 |
250.6 |
240.0 |
| O7' |
C8' |
H8'1 |
H8'2 |
125.2 |
120.0 |
| O7' |
C8' |
H8'1 |
H8'3 |
234.7 |
240.1 |
| H8'2 |
C8' |
H8'1 |
H8'3 |
109.4 |
120.1 |
| O7' |
C8' |
H8'2 |
H8'1 |
207.9 |
240.0 |
| O7' |
C8' |
H8'2 |
H8'3 |
103.9 |
119.9 |
| H8'1 |
C8' |
H8'2 |
H8'3 |
256.1 |
239.9 |
| O7' |
C8' |
H8'3 |
H8'1 |
152.2 |
119.9 |
| O7' |
C8' |
H8'3 |
H8'2 |
256.1 |
240.0 |
| H8'1 |
C8' |
H8'3 |
H8'2 |
103.9 |
120.1 |